Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Forward (+)

14540866 .. 14543113

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGCCCCTACTGAAACCTCATATTCACAAGCCATCTTCCTTCCCCGGTGCTCCCTCCGACACCCTGCTCGCAGAAAGAGCAATCACATACCTCAAACGCCATCCCCACAACCTCACTTCTCTCTCTTCCGGTTTTACCCCTGAGGCAGCCTCCTTTTTGCTCCTCAAGTCCCAATTCGACCAGCCCCTAACCCTAAAGTTCCTCAGCTGGGCTCGGAACCATGGTTTCTTCACCTTCCAATGCAACGCCCAACACCTCTCCGAGGACGTTGCCGTCAACACCATCGACGACAGAGGTAATTTGGTCTTTCAGTGCCTCAGTGACTCCCTGCATATCTGCAATTCGAGCTCGGCGGTTTTCGACTTGGTGGGGAAGTCTTACTCTCTCTTGAATTTAATTGATGAAGCTCCGAATATTGTTAATTTAGCCAAAGTTCATGGATTTATGCCTGGTGTACTGTCATATAATGCAATTTTAGATGCAATAAGTAGGTCAAAAGAGTCTGTTCAATTTGCTGAGGAGGTGTTTTCTGAGATGATTAGCAATGGGGTATCCCCGAATTTTTTTGGTGGAATGGAAAGAAATGGATGTTTGCCGAATGTGGTTACTTATAATACGCTGATTGATGCATATTGCAAATTGAATAGGATTGATCAGGCATTTGAACTGTTGAGATTGATGGCGTTGAAGGGATTGGAGCTGAATTTGATTTCATATAATGTGGTAATCAACGGTGGGTATTGCAAGGAAGGTAATGTTCACCAAGCACTTGTTCTGCAAGAGGAGATGCGGAGGAATCGCTTGTCTCCCAATGTATTCAATGTCATTAATGCTATGTGTAAGCCTAAGAATTTCAATCGAGCAATGGAGTTTTTCGATCAGATGCGCGTTAGAGGACTTCGTCCAAATGAGAGGATGTACACTACGTTGATTGGTGGTTTCTACCAACAGGGGTTCTTAAATGAAGCTTATGATGATGCCATTCGAATCCTACAAGTTATGACAGGGAAAGGGTTGTCCCCTGATGTACCAAGTTATAGTACTATTATAACTGGGTTTTGTTGGCATCAAGAATTGGAGAGCGCATTTCGAATGAAGCTGGAGATGATGGATGCGGGTGTATTACCTGATGCTGTTACCTATTCATCACTCATTCAAGTTGTCTGTCAGCAAAGAAGACTAGGTGAATCTTGTGATCTATTCCAAGAAATGTTGAGTATGGGTATGCCTCCTGATGAATTTACATACACAACATTGATCAATGCTTACTGTGGTTTGATGAAAGAAGCACACCTAGTTTTTGAGACAATGATTGAGAGGAAACACAAGCGTAACGAAGCAGTTTATCATGTTATTATTCATGGTCATTGTAAGGGTGGAAATGTTATCAAGGCATACAACCTGTACAAAGAAATGTTGCATTCTGGTTTTGTTCCGCATACTGTGATGGTTATTGGGCTGGTTAAAGCACTTTTCACAGAGGGGATGAACAGTGAATTGAGTCAAGTCATAGGGAACACACTGAGAAACTGTCAGCTTTTTGATGCTGAATGTGCAAAACTACTCGTTGCCATCAACCATAAAGAAGGAATATGGATGAAGTTTTTAATGTGCTTAATGATAGCCAAGGACGGCCTCCTTTCAAATAGTGGAGTAAGAGCTTCTGCAGGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

559

Amino Acids

62.51

Weight (kDa)

6.65

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	612, 1049
AasI	GACNNNNNNGTC	1 cut(s)	272
AccII	CGCG	1 cut(s)	888
AciI	CCGC	4 cut(s)	353, 790, 1115, 1436
AcsI	RAATTY	5 cut(s)	391, 559, 703, 850, 1238
AfaI	GTAC	5 cut(s)	456, 920, 1029, 1042, 1406
AfiI	CCNNNNNNNGG	2 cut(s)	208, 262
AgsI	TTSAA	9 cut(s)	391, 509, 643, 665, 688, 820, 856, 1157, 1644
AjnI	CCWGG	1 cut(s)	448
AjuI	GAANNNNNNNTTGG	2 cut(s)	756, 788
AluBI	AGCT	8 cut(s)	207, 348, 407, 700, 968, 1099, 1537, 1661
AluI	AGCT	8 cut(s)	207, 348, 407, 700, 968, 1099, 1537, 1661
Alw21I	GWGCWC	2 cut(s)	52, 350
Alw26I	GTCTC	2 cut(s)	810, 1298
AoxI	GGCC	1 cut(s)	1633
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	5 cut(s)	391, 559, 703, 850, 1238
AseI	ATTAAT	1 cut(s)	828
AspLEI	GCGC	2 cut(s)	888, 1085
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	223, 752, 1196
AsuII	TTCGAA	2 cut(s)	985, 1090
AxyI	CCTNAGG	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	214, 350
BbsI	GAAGAC	1 cut(s)	1183
Bbv12I	GWGCWC	2 cut(s)	52, 350
BbvCI	CCTCAGC	2 cut(s)	203, 516
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	7 cut(s)	40, 108, 290, 673, 1102, 1441, 1580
BceAI	ACGGC	2 cut(s)	257, 1648
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	1 cut(s)	562
BclI	TGATCA	2 cut(s)	652, 1257
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	810, 1298
BfaI	CTAG	2 cut(s)	1181, 1295
BfmI	CTRYAG	1 cut(s)	1665
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmcAI	AGTACT	1 cut(s)	1042
Bme1390I	CCNGG	2 cut(s)	45, 450
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	45, 450
BmrI	ACTGGG	1 cut(s)	1062
BmsI	GCATC	9 cut(s)	469, 616, 777, 873, 967, 1075, 1102, 1120, 1534
BmuI	ACTGGG	1 cut(s)	1062
BpiI	GAAGAC	1 cut(s)	1183
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpmI	CTGGAG	1 cut(s)	1121
Bpu10I	CCTNAGC	2 cut(s)	203, 516
Bpu14I	TTCGAA	2 cut(s)	985, 1090
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	43, 220, 261, 1626
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 262
Bse1I	ACTGG	1 cut(s)	1057
Bse21I	CCTNAGG	1 cut(s)	141
Bse3DI	GCAATG	2 cut(s)	550, 870
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	4 cut(s)	43, 220, 261, 1626
BseGI	GGATG	6 cut(s)	100, 593, 921, 1117, 1491, 1602
BseLI	CCNNNNNNNGG	2 cut(s)	208, 262
BseMI	GCAATG	2 cut(s)	550, 870
BseMII	CTCAG	6 cut(s)	132, 217, 331, 507, 522, 1514
BseNI	ACTGG	1 cut(s)	1057
BseRI	GAGGAG	3 cut(s)	152, 533, 797
BseXI	GCAGC	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	888
BshFI	GGCC	1 cut(s)	1635
BsiHKAI	GWGCWC	2 cut(s)	52, 350
BsiSI	CCGG	2 cut(s)	45, 129
BslFI	GGGAC	2 cut(s)	154, 1003
BslI	CCNNNNNNNGG	2 cut(s)	208, 262
BsmAI	GTCTC	2 cut(s)	810, 1298
BsmFI	GGGAC	2 cut(s)	154, 1003
BsmI	GAATGC	1 cut(s)	1420
BsnI	GGCC	1 cut(s)	1635
Bsp119I	TTCGAA	2 cut(s)	985, 1090
Bsp1286I	GDGCHC	3 cut(s)	52, 214, 350
Bsp1407I	TGTACA	2 cut(s)	918, 1404
Bsp143I	GATC	4 cut(s)	652, 877, 1195, 1257
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	4 cut(s)	353, 790, 1115, 1436
BspANI	GGCC	1 cut(s)	1635
BspCNI	CTCAG	6 cut(s)	133, 216, 330, 508, 523, 1515
BspFNI	CGCG	1 cut(s)	888
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	1669
BspT104I	TTCGAA	2 cut(s)	985, 1090
BsrDI	GCAATG	2 cut(s)	550, 870
BsrGI	TGTACA	2 cut(s)	918, 1404
BsrI	ACTGG	1 cut(s)	1057
BssECI	CCNNGG	4 cut(s)	43, 220, 261, 1626
BssMI	GATC	4 cut(s)	652, 877, 1195, 1257
BssT1I	CCWWGG	2 cut(s)	220, 1626
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	7 cut(s)	459, 669, 734, 1271, 1444, 1493, 1532
Bst6I	CTCTTC	1 cut(s)	130
BstAUI	TGTACA	2 cut(s)	918, 1404
BstBI	TTCGAA	2 cut(s)	985, 1090
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	7 cut(s)	141, 203, 317, 516, 531, 846, 1523
BstDSI	CCRYGG	1 cut(s)	220
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	6 cut(s)	100, 593, 921, 1117, 1491, 1602
BstFNI	CGCG	1 cut(s)	888
BstHHI	GCGC	2 cut(s)	888, 1085
BstKTI	GATC	4 cut(s)	655, 880, 1198, 1260
BstMAI	GTCTC	2 cut(s)	810, 1298
BstMBI	GATC	4 cut(s)	652, 877, 1195, 1257
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 345, 1553
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	43, 448
BstSFI	CTRYAG	1 cut(s)	1665
BstUI	CGCG	1 cut(s)	888
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	1183
Bsu36I	CCTNAGG	1 cut(s)	141
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	1635
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	6 cut(s)	100, 593, 921, 1117, 1491, 1602
BtsIMutI	CAGTG	4 cut(s)	317, 325, 1498, 1520
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	2 cut(s)	888, 1085
Csp6I	GTAC	5 cut(s)	455, 919, 1028, 1041, 1405
CviAII	CATG	4 cut(s)	221, 437, 1349, 1361
CviQI	GTAC	5 cut(s)	455, 919, 1028, 1041, 1405
DdeI	CTNAG	7 cut(s)	141, 203, 317, 516, 531, 846, 1523
DpnI	GATC	4 cut(s)	654, 879, 1197, 1259
DpnII	GATC	4 cut(s)	652, 877, 1195, 1257
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	220, 1626
Eco24I	GRGCYC	2 cut(s)	214, 350
Eco53kI	GAGCTC	1 cut(s)	348
Eco81I	CCTNAGG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	348
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	220, 1626
EcoT22I	ATGCAT	1 cut(s)	631
EcoT38I	GRGCYC	2 cut(s)	214, 350
ErhI	CCWWGG	2 cut(s)	220, 1626
FaeI	CATG	4 cut(s)	224, 440, 1352, 1364
FaqI	GGGAC	2 cut(s)	154, 1003
FatI	CATG	4 cut(s)	220, 436, 1348, 1360
FauI	CCCGC	1 cut(s)	1108
FbaI	TGATCA	2 cut(s)	652, 1257
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	6 cut(s)	87, 600, 928, 1124, 1498, 1609
FriOI	GRGCYC	2 cut(s)	214, 350
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	2 cut(s)	1181, 1295
GlaI	GCGC	2 cut(s)	887, 1084
GluI	GCNGC	1 cut(s)	147
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	1 cut(s)	1121
HaeIII	GGCC	1 cut(s)	1635
HapII	CCGG	2 cut(s)	45, 129
HhaI	GCGC	2 cut(s)	888, 1085
Hin1II	CATG	4 cut(s)	224, 440, 1352, 1364
Hin6I	GCGC	2 cut(s)	886, 1083
HinP1I	GCGC	2 cut(s)	886, 1083
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	966
HinfI	GANTC	6 cut(s)	323, 500, 796, 987, 1187, 1501
HpaII	CCGG	2 cut(s)	45, 129
HphI	GGTGA	3 cut(s)	223, 752, 1196
Hpy166II	GTNNAC	4 cut(s)	277, 455, 760, 921
Hpy188I	TCNGA	6 cut(s)	58, 216, 262, 411, 532, 882
Hpy188III	TCNNGA	3 cut(s)	388, 1070, 1232
Hpy8I	GTNNAC	4 cut(s)	277, 455, 760, 921
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	5 cut(s)	49, 244, 682, 743, 1580
HpyCH4III	ACNGT	7 cut(s)	459, 669, 734, 1271, 1444, 1493, 1532
HpyCH4IV	ACGT	2 cut(s)	267, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 345, 1553
HpyF3I	CTNAG	7 cut(s)	141, 203, 317, 516, 531, 846, 1523
HpySE526I	ACGT	2 cut(s)	267, 926
Hsp92II	CATG	4 cut(s)	224, 440, 1352, 1364
HspAI	GCGC	2 cut(s)	886, 1083
Ksp22I	TGATCA	2 cut(s)	652, 1257
Kzo9I	GATC	4 cut(s)	652, 877, 1195, 1257
LmnI	GCTCC	4 cut(s)	55, 165, 412, 697
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	9 cut(s)	469, 616, 777, 873, 967, 1075, 1102, 1120, 1534
MaeI	CTAG	2 cut(s)	1181, 1295
MaeII	ACGT	2 cut(s)	267, 926
MaeIII	GTNAC	4 cut(s)	320, 604, 1135, 1331
MalI	GATC	4 cut(s)	654, 879, 1197, 1259
MboI	GATC	4 cut(s)	652, 877, 1195, 1257
MboII	GAAGA	4 cut(s)	27, 117, 220, 1188
MhlI	GDGCHC	3 cut(s)	52, 214, 350
MlyI	GAGTC	3 cut(s)	317, 509, 1510
MmeI	TCCRAC	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	631
MseI	TTAA	7 cut(s)	395, 420, 828, 959, 1464, 1607, 1616
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	2 cut(s)	45, 129
MspR9I	CCNGG	2 cut(s)	45, 450
Mva1269I	GAATGC	1 cut(s)	1420
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	1 cut(s)	888
MwoI	GCNNNNNNNGC	3 cut(s)	77, 345, 1553
NciI	CCSGG	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	652, 877, 1195, 1257
NlaIII	CATG	4 cut(s)	224, 440, 1352, 1364
NlaIV	GGNNCC	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	631
NspV	TTCGAA	2 cut(s)	985, 1090
PctI	GAATGC	1 cut(s)	1420
PfeI	GAWTC	3 cut(s)	796, 987, 1187
PflFI	GACNNNGTC	1 cut(s)	900
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	3 cut(s)	317, 508, 1509
PpsI	GAGTC	3 cut(s)	317, 508, 1509
PshBI	ATTAAT	1 cut(s)	828
PsiI	TTATAA	2 cut(s)	612, 1049
Psp124BI	GAGCTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	1669
PsyI	GACNNNGTC	1 cut(s)	900
PvuII	CAGCTG	1 cut(s)	207
RsaI	GTAC	5 cut(s)	456, 920, 1029, 1042, 1406
RsaNI	GTAC	5 cut(s)	455, 919, 1028, 1041, 1405
SacI	GAGCTC	1 cut(s)	350
SaqAI	TTAA	7 cut(s)	395, 420, 828, 959, 1464, 1607, 1616
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	4 cut(s)	652, 877, 1195, 1257
ScaI	AGTACT	1 cut(s)	1042
SchI	GAGTC	3 cut(s)	317, 509, 1510
ScrFI	CCNGG	2 cut(s)	45, 450
SduI	GDGCHC	3 cut(s)	52, 214, 350
SfaNI	GCATC	9 cut(s)	469, 616, 777, 873, 967, 1075, 1102, 1120, 1534
SfcI	CTRYAG	1 cut(s)	1665
SfuI	TTCGAA	2 cut(s)	985, 1090
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SsiI	CCGC	4 cut(s)	353, 790, 1115, 1436
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	2 cut(s)	1181, 1295
SstI	GAGCTC	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	43, 448
StyI	CCWWGG	2 cut(s)	220, 1626
TaaI	ACNGT	7 cut(s)	459, 669, 734, 1271, 1444, 1493, 1532
TaiI	ACGT	2 cut(s)	270, 929
TaqI	TCGA	8 cut(s)	177, 285, 344, 360, 859, 876, 985, 1090
TatI	WGTACW	4 cut(s)	454, 918, 1040, 1404
TfiI	GAWTC	3 cut(s)	796, 987, 1187
Tru1I	TTAA	7 cut(s)	395, 420, 828, 959, 1464, 1607, 1616
Tru9I	TTAA	7 cut(s)	395, 420, 828, 959, 1464, 1607, 1616
TscAI	CASTG	4 cut(s)	317, 325, 1498, 1527
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	320
TspRI	CASTG	4 cut(s)	317, 325, 1498, 1527
Tth111I	GACNNNGTC	1 cut(s)	900
VspI	ATTAAT	1 cut(s)	828
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	5 cut(s)	391, 559, 703, 850, 1238
XspI	CTAG	2 cut(s)	1181, 1295
ZrmI	AGTACT	1 cut(s)	1042
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.