Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

9904883 .. 9907144

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG089600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGCCCCTCCCAAGACCCCATATTCCAACCCAGTCTTCCTTCCGCTTCTCTCCCTCCGACGCCCTCCTCGCCGACAAAGCAATCACCTACCTCAAGCGCCACCCCCACCATCTCAACTCTCTCTCTTCCCATTTCACCCCTGAAGCCGCCTCCTGCTTGCTCCTCAAGTCCCAATTCGACCAAACCCTAATACTAAAGTTCCTCAATTGGGCTCGCAACCCCCACCACCGCTTCTTCACCTTCCAGAGCAAGTGCCTCGCCCTCCACATCCTCACCCGCTTCAAGCTCTACAAGTCCGCCCAGGCCCTCGCCGAGGACGTCGCCGTCAACACCGTCGACGACAGGGGCAATTTGGTCTTTCAGTGCCTCACGGACTCGCTGCAGGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATTTCGTTGATAAAGCTATTAACATTGTTAACTTAGCTAAAGCTCATGGATTTATGCCCGGTGTGCTTTCGTATAATGCGATTTTAGATGCTGTGATTAGGTCTAGAGGGTCTGCTCAGTTTGCTGAGGAGGTTTTTAGTGAGATGATTAGGAATGGGGTTTCGCCGAATGTGTATACATATAACATTTTGATTAGGGGTTTCAGTGCGGCGGGGAATTTGGAAATGGTGTTGTACTTTTGGAGTGAAATGGAGAGGAATGGGTGTCTGCCGAATGTGGTTACGTATAATACGTTGATTGATGCTTATTGTAAGTTGAAGAGGATGGATGATGCGTTCGGATTGTTGAGATCGATGGCATTGAAGGGTTTGGAGCCTAATTTGATTTCGTATAATGTGGTGATTAATGGGTTGTGTCGAGAAGGGAGGATGAATGAGACTGGTCAGATTCTTGAGGAGATGAAAAGGAAGGGTTTTGTTCCTGACGAGGTGACGAATAATACACTCATTAGTGGGTATTGCAAGGAAGGTAATTTTCACCAAGCACTCGTGTTGCAAGAGGAGATGCGGAGGAATGGCTTGTCTCCGAATGTTGTCACTTATACAGCATTGATCAATGCCATGTGTAAGGCTAAGAATTTGAATCGAGCAATGGAGTTTTTTGAGCAGATGCGTGTTAGAGGACTTCGTCCAAATGAGAGGACGTATACTACATTGATAGATGGCTTTGCCCAACAAGGGTTCTTAAATGAAGCTTACGGTCTTCTGAATGAAATGGTTGGGGGTGGATTTTCTCCTTCAGTTGTGACTTACAATGCCCTTATCAATGGATACTGCTTATTAGGCAGGATGGAAGAGGCAATGGGAATTGTACAAGATATGGTAGGGAAAGGGTTATCCCCTGACGTAGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAACTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATCACCCGATGCTGTTACGTATTCATCACTAATTCAAGGTGTCTGTCAGCAAGGGAGACTAGTTGACGCTTGTGATCTCTTCCAAGAAATGATAAGTATGGGTTTGCATCCTGATGAATTCACATACACAACCTTGATCAATGCTTACTGCAAGGAAGGGGATTTGAATAAGGCTCTTCAGTTGAATGATGAAATGATAAAGAAAGGTTTCCTACCTGATGTTGTGACCTACAGTGTGCTTATCAATGGACTTAACAAACAAGCTCGGACAAGAGAAGCAAAGAAGCTTCTACTGAAGTTGTTCTATGATAACTCTGTCCCGGATGATGTCACATACAATACTCTAATAGAGAGCTGCACAAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATCAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGGAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTGTGACTGTTATTGCACTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACTCTGAGGAGCTGTGAGCTTACTGATGCTGAGCTTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATTTGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTCCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

753

Amino Acids

84.07

Weight (kDa)

6.14

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	150 - 276	5e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	167 - 215	1e-12	PPR repeat family
PPR_3	PF13812	192 - 250	3.3e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	199 - 231	4.4e-06	PPR repeat
PPR	PF01535	206 - 236	1.8e-06	PPR repeat
PPR_2	PF13041	209 - 244	2.6e-08	PPR repeat family
PPR_3	PF13812	230 - 283	7.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	234 - 266	7.3e-14	PPR repeat
PPR_2	PF13041	238 - 287	8e-19	PPR repeat family
PPR	PF01535	241 - 270	4.9e-08	PPR repeat
PPR_1	PF12854	269 - 302	2.8e-10	PPR repeat
PPR_2	PF13041	273 - 312	2e-11	PPR repeat family
PPR	PF01535	276 - 306	7e-07	PPR repeat
PPR_long	PF17177	292 - 405	2.7e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	297 - 355	8.9e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	304 - 337	6.4e-10	PPR repeat
PPR_2	PF13041	308 - 357	2.2e-18	PPR repeat family
PPR	PF01535	314 - 341	2.5e-06	PPR repeat
PPR_3	PF13812	333 - 383	8.6e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	339 - 372	2.7e-13	PPR repeat
PPR_2	PF13041	343 - 391	6.3e-19	PPR repeat family
PPR	PF01535	346 - 376	2.4e-07	PPR repeat
TPR_24	PF23276	347 - 439	8.3e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	361 - 453	3.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	368 - 425	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	374 - 407	7.2e-11	PPR repeat
PPR	PF01535	382 - 410	1.6e-06	PPR repeat
PPR_2	PF13041	383 - 426	1.5e-12	PPR repeat family
PPR_long	PF17177	396 - 500	2.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	410 - 442	6.9e-11	PPR repeat
PPR_2	PF13041	413 - 462	1.3e-17	PPR repeat family
PPR	PF01535	416 - 446	7.9e-09	PPR repeat
PPR_3	PF13812	437 - 493	2.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	444 - 477	4.6e-10	PPR repeat
PPR_2	PF13041	448 - 497	2.2e-17	PPR repeat family
PPR_long	PF17177	464 - 562	6.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	479 - 511	4.4e-12	PPR repeat
PPR	PF01535	486 - 516	3.6e-07	PPR repeat
PPR_2	PF13041	486 - 532	2.7e-16	PPR repeat family
PPR_3	PF13812	507 - 563	3e-10	Pentatricopeptide repeat domain
TPR_24	PF23276	509 - 602	1.5e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	514 - 546	1.3e-13	PPR repeat
PPR	PF01535	521 - 551	3.4e-08	PPR repeat
PPR_2	PF13041	522 - 566	2e-17	PPR repeat family
PPR_1	PF12854	549 - 578	9e-06	PPR repeat
PPR_1	PF12854	636 - 666	1.1e-06	PPR repeat
PPR_2	PF13041	638 - 685	1.1e-08	PPR repeat family
PPR	PF01535	642 - 671	4.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AatII	GACGTC	1 cut(s)	321
Acc36I	ACCTGC	1 cut(s)	373
AccB7I	CCANNNNNTGG	1 cut(s)	2234
AccI	GTMKAC	3 cut(s)	336, 617, 1148
AciI	CCGC	9 cut(s)	43, 147, 229, 277, 297, 404, 650, 653, 1009
AcoI	YGGCCR	1 cut(s)	2208
AcsI	RAATTY	6 cut(s)	442, 658, 1078, 1559, 1811, 2173
AcuI	CTGAAG	4 cut(s)	162, 1224, 1604, 1757
AcyI	GRCGYC	2 cut(s)	60, 318
AfaI	GTAC	4 cut(s)	677, 1314, 1363, 1988
AfeI	AGCGCT	1 cut(s)	2245
AfiI	CCNNNNNNNGG	5 cut(s)	208, 313, 1179, 1837, 2234
AhlI	ACTAGT	1 cut(s)	1501
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AloI	GAACNNNNNNTCC	2 cut(s)	761, 793
Alw26I	GTCTC	4 cut(s)	872, 1029, 1492, 2225
Aor51HI	AGCGCT	1 cut(s)	2245
AoxI	GGCC	2 cut(s)	303, 2208
ApeKI	GCWGC	2 cut(s)	379, 1797
ApoI	RAATTY	6 cut(s)	442, 658, 1078, 1559, 1811, 2173
AseI	ATTAAT	1 cut(s)	846
Asp700I	GAANNNNTTC	2 cut(s)	1649, 1742
AspLEI	GCGC	2 cut(s)	99, 2246
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	2 cut(s)	501, 1763
BalI	TGGCCA	1 cut(s)	2210
BanII	GRGCYC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	989
BbsI	GAAGAC	2 cut(s)	27, 1196
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	366, 1784
BccI	CCATC	8 cut(s)	117, 760, 790, 1157, 1285, 1414, 1420, 2210
BceAI	ACGGC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	1265
BclI	TGATCA	3 cut(s)	1053, 1578, 1893
BcnI	CCSGG	2 cut(s)	501, 1763
BcoDI	GTCTC	4 cut(s)	872, 1029, 1492, 2225
BcuI	ACTAGT	1 cut(s)	1501
BfaI	CTAG	2 cut(s)	546, 1502
BfmI	CTRYAG	2 cut(s)	380, 1672
BfoI	RGCGCY	2 cut(s)	100, 2247
BfuAI	ACCTGC	1 cut(s)	373
BfuI	GTATCC	1 cut(s)	1265
BisI	GCNGC	4 cut(s)	147, 380, 651, 1798
BlpI	GCTNAGC	1 cut(s)	2130
BlsI	GCNGC	4 cut(s)	148, 381, 652, 1799
BmcAI	AGTACT	1 cut(s)	1363
Bme1390I	CCNGG	3 cut(s)	302, 501, 1763
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	3 cut(s)	302, 501, 1763
BmrI	ACTGGG	2 cut(s)	25, 1383
BmuI	ACTGGG	2 cut(s)	25, 1383
BpiI	GAAGAC	2 cut(s)	27, 1196
BpmI	CTGGAG	1 cut(s)	1418
Bpu10I	CCTNAGC	1 cut(s)	567
Bpu1102I	GCTNAGC	1 cut(s)	2130
BpuEI	CTTGAG	3 cut(s)	77, 149, 914
BpuMI	CCSGG	2 cut(s)	501, 1763
Bsa29I	ATCGAT	1 cut(s)	794
BsaAI	YACGTR	2 cut(s)	726, 1461
BsaHI	GRCGYC	2 cut(s)	60, 318
BsaI	GGTCTC	1 cut(s)	2225
BsaJI	CCNNGG	4 cut(s)	300, 312, 2197, 2211
Bsc4I	CCNNNNNNNGG	5 cut(s)	208, 313, 1179, 1837, 2234
Bse1I	ACTGG	4 cut(s)	31, 886, 1378, 1401
Bse3DI	GCAATG	2 cut(s)	1098, 1308
BseBI	CCWGG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	794
BseDI	CCNNGG	4 cut(s)	300, 312, 2197, 2211
BseGI	GGATG	9 cut(s)	267, 771, 775, 876, 1296, 1549, 1771, 2185, 2221
BseLI	CCNNNNNNNGG	5 cut(s)	208, 313, 1179, 1837, 2234
BseMI	GCAATG	2 cut(s)	1098, 1308
BseMII	CTCAG	6 cut(s)	558, 572, 2052, 2072, 2096, 2121
BseNI	ACTGG	4 cut(s)	31, 886, 1378, 1401
BseRI	GAGGAG	6 cut(s)	56, 152, 584, 911, 1016, 2122
BseXI	GCAGC	2 cut(s)	366, 1784
BsgI	GTGCAG	1 cut(s)	1783
BshFI	GGCC	2 cut(s)	305, 2210
BshVI	ATCGAT	1 cut(s)	794
BsiSI	CCGG	2 cut(s)	501, 1763
BslFI	GGGAC	2 cut(s)	154, 1745
BslI	CCNNNNNNNGG	5 cut(s)	208, 313, 1179, 1837, 2234
BsmAI	GTCTC	4 cut(s)	872, 1029, 1492, 2225
BsmFI	GGGAC	2 cut(s)	154, 1745
BsmI	GAATGC	1 cut(s)	1406
BsnI	GGCC	2 cut(s)	305, 2210
Bso31I	GGTCTC	1 cut(s)	2225
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp1407I	TGTACA	2 cut(s)	1312, 1986
Bsp143I	GATC	6 cut(s)	791, 1053, 1516, 1578, 1873, 1893
Bsp1720I	GCTNAGC	1 cut(s)	2130
BspACI	CCGC	9 cut(s)	43, 147, 229, 277, 297, 404, 650, 653, 1009
BspANI	GGCC	2 cut(s)	305, 2210
BspCNI	CTCAG	6 cut(s)	559, 571, 2053, 2073, 2097, 2122
BspDI	ATCGAT	1 cut(s)	794
BspLI	GGNNCC	1 cut(s)	816
BspMAI	CTGCAG	1 cut(s)	384
BspMI	ACCTGC	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	1623
BspTNI	GGTCTC	1 cut(s)	2225
BsrDI	GCAATG	2 cut(s)	1098, 1308
BsrGI	TGTACA	2 cut(s)	1312, 1986
BsrI	ACTGG	4 cut(s)	31, 886, 1378, 1401
BssECI	CCNNGG	4 cut(s)	300, 312, 2197, 2211
BssMI	GATC	6 cut(s)	791, 1053, 1516, 1578, 1873, 1893
BssNAI	GTATAC	2 cut(s)	618, 1149
BssNI	GRCGYC	2 cut(s)	60, 318
BssSI	CACGAG	1 cut(s)	989
BssT1I	CCWWGG	2 cut(s)	2197, 2211
Bst1107I	GTATAC	2 cut(s)	618, 1149
Bst2BI	CACGAG	1 cut(s)	989
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	6 cut(s)	334, 1202, 1676, 1891, 2026, 2032
Bst6I	CTCTTC	5 cut(s)	130, 755, 1290, 1526, 1623
BstACI	GRCGYC	2 cut(s)	60, 318
BstAUI	TGTACA	2 cut(s)	1312, 1986
BstBAI	YACGTR	2 cut(s)	726, 1461
BstC8I	GCNNGC	4 cut(s)	158, 214, 2136, 2242
BstDEI	CTNAG	8 cut(s)	475, 558, 567, 1074, 2061, 2081, 2105, 2130
BstENI	CCTNNNNNAGG	2 cut(s)	311, 1835
BstF5I	GGATG	9 cut(s)	267, 771, 775, 876, 1296, 1549, 1771, 2185, 2221
BstH2I	RGCGCY	2 cut(s)	100, 2247
BstHHI	GCGC	2 cut(s)	99, 2246
BstKTI	GATC	6 cut(s)	794, 1056, 1519, 1581, 1876, 1896
BstMAI	GTCTC	4 cut(s)	872, 1029, 1492, 2225
BstMBI	GATC	6 cut(s)	791, 1053, 1516, 1578, 1873, 1893
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 77, 396, 505, 563, 1284, 2135, 2140
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	300, 499, 1761
BstSFI	CTRYAG	2 cut(s)	380, 1672
BstSNI	TACGTA	2 cut(s)	726, 1461
BstV1I	GCAGC	2 cut(s)	366, 1784
BstV2I	GAAGAC	2 cut(s)	27, 1196
BstZ17I	GTATAC	2 cut(s)	618, 1149
Bsu15I	ATCGAT	1 cut(s)	794
BsuI	GTATCC	1 cut(s)	1265
BsuRI	GGCC	2 cut(s)	305, 2210
BsuTUI	ATCGAT	1 cut(s)	794
BtsCI	GGATG	9 cut(s)	267, 771, 775, 876, 1296, 1549, 1771, 2185, 2221
BtsIMutI	CAGTG	7 cut(s)	368, 652, 1371, 1681, 1896, 2039, 2058
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	4 cut(s)	158, 214, 2136, 2242
CfoI	GCGC	2 cut(s)	99, 2246
Cfr13I	GGNCC	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	794
CseI	GACGC	2 cut(s)	68, 1517
Csp6I	GTAC	4 cut(s)	676, 1313, 1362, 1987
CviAII	CATG	4 cut(s)	488, 1063, 1849, 1943
CviQI	GTAC	4 cut(s)	676, 1313, 1362, 1987
DdeI	CTNAG	8 cut(s)	475, 558, 567, 1074, 2061, 2081, 2105, 2130
DpnI	GATC	6 cut(s)	793, 1055, 1518, 1580, 1875, 1895
DpnII	GATC	6 cut(s)	791, 1053, 1516, 1578, 1873, 1893
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	2208
Eam1104I	CTCTTC	5 cut(s)	130, 755, 1290, 1526, 1623
EarI	CTCTTC	5 cut(s)	130, 755, 1290, 1526, 1623
EciI	GGCGGA	1 cut(s)	286
Eco105I	TACGTA	2 cut(s)	726, 1461
Eco130I	CCWWGG	2 cut(s)	2197, 2211
Eco24I	GRGCYC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	2225
Eco47III	AGCGCT	1 cut(s)	2245
Eco57I	CTGAAG	4 cut(s)	162, 1224, 1604, 1757
EcoNI	CCTNNNNNAGG	2 cut(s)	311, 1835
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	1559
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	2197, 2211
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	2 cut(s)	2197, 2211
FaeI	CATG	4 cut(s)	491, 1066, 1852, 1946
FaqI	GGGAC	2 cut(s)	154, 1745
FatI	CATG	4 cut(s)	487, 1062, 1848, 1942
FauI	CCCGC	2 cut(s)	284, 646
FbaI	TGATCA	3 cut(s)	1053, 1578, 1893
FblI	GTMKAC	3 cut(s)	336, 617, 1148
Fnu4HI	GCNGC	4 cut(s)	147, 380, 651, 1798
FokI	GGATG	9 cut(s)	254, 778, 782, 883, 1303, 1536, 1778, 2192, 2228
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	147, 380, 651, 1798
FspBI	CTAG	2 cut(s)	546, 1502
GlaI	GCGC	2 cut(s)	98, 2245
GluI	GCNGC	4 cut(s)	147, 380, 651, 1798
GsuI	CTGGAG	1 cut(s)	1418
HaeII	RGCGCY	2 cut(s)	100, 2247
HaeIII	GGCC	2 cut(s)	305, 2210
HapII	CCGG	2 cut(s)	501, 1763
HgaI	GACGC	2 cut(s)	68, 1517
HhaI	GCGC	2 cut(s)	99, 2246
Hin1I	GRCGYC	2 cut(s)	60, 318
Hin1II	CATG	4 cut(s)	491, 1066, 1852, 1946
Hin6I	GCGC	2 cut(s)	97, 2244
HinP1I	GCGC	2 cut(s)	97, 2244
HincII	GTYRAC	4 cut(s)	328, 337, 472, 1507
HindII	GTYRAC	4 cut(s)	328, 337, 472, 1507
HindIII	AAGCTT	2 cut(s)	1194, 1727
HinfI	GANTC	6 cut(s)	374, 889, 1084, 1842, 1981, 2083
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	2 cut(s)	501, 1763
Hpy166II	GTNNAC	6 cut(s)	328, 337, 472, 618, 1149, 1507
Hpy188I	TCNGA	7 cut(s)	58, 782, 888, 1029, 1209, 1710, 2106
Hpy188III	TCNNGA	9 cut(s)	244, 546, 860, 893, 923, 1391, 1553, 1897, 1970
Hpy8I	GTNNAC	6 cut(s)	328, 337, 472, 618, 1149, 1507
Hpy99I	CGWCG	4 cut(s)	62, 323, 338, 341
HpyCH4III	ACNGT	6 cut(s)	334, 1202, 1676, 1891, 2026, 2032
HpyCH4IV	ACGT	7 cut(s)	318, 725, 734, 1145, 1347, 1460, 1932
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 77, 396, 505, 563, 1284, 2135, 2140
HpyF3I	CTNAG	8 cut(s)	475, 558, 567, 1074, 2061, 2081, 2105, 2130
HpySE526I	ACGT	7 cut(s)	318, 725, 734, 1145, 1347, 1460, 1932
Hsp92I	GRCGYC	2 cut(s)	60, 318
Hsp92II	CATG	4 cut(s)	491, 1066, 1852, 1946
HspAI	GCGC	2 cut(s)	97, 2244
Ksp22I	TGATCA	3 cut(s)	1053, 1578, 1893
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	6 cut(s)	791, 1053, 1516, 1578, 1873, 1893
LguI	GCTCTTC	1 cut(s)	1623
LmnI	GCTCC	5 cut(s)	165, 814, 1919, 2109, 2237
Lsp1109I	GCAGC	2 cut(s)	366, 1784
MaeI	CTAG	2 cut(s)	546, 1502
MaeII	ACGT	7 cut(s)	318, 725, 734, 1145, 1347, 1460, 1932
MaeIII	GTNAC	8 cut(s)	721, 931, 1036, 1246, 1456, 1666, 1771, 2026
MalI	GATC	6 cut(s)	793, 1055, 1518, 1580, 1875, 1895
MboI	GATC	6 cut(s)	791, 1053, 1516, 1578, 1873, 1893
MfeI	CAATTG	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	2210
MluNI	TGGCCA	1 cut(s)	2210
MlyI	GAGTC	2 cut(s)	368, 2092
MmeI	TCCRAC	2 cut(s)	50, 81
Mox20I	TGGCCA	1 cut(s)	2210
MroXI	GAANNNNTTC	2 cut(s)	1649, 1742
MscI	TGGCCA	1 cut(s)	2210
MseI	TTAA	8 cut(s)	462, 471, 846, 1187, 1695, 1815, 2046, 2190
MslI	CAYNNNNRTG	1 cut(s)	1554
Msp20I	TGGCCA	1 cut(s)	2210
MspI	CCGG	2 cut(s)	501, 1763
MspR9I	CCNGG	3 cut(s)	302, 501, 1763
MunI	CAATTG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	1406
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	8 cut(s)	68, 77, 396, 505, 563, 1284, 2135, 2140
NciI	CCSGG	2 cut(s)	501, 1763
NdeII	GATC	6 cut(s)	791, 1053, 1516, 1578, 1873, 1893
NlaIII	CATG	4 cut(s)	491, 1066, 1852, 1946
NlaIV	GGNNCC	1 cut(s)	816
NmeAIII	GCCGAG	2 cut(s)	337, 380
NmuCI	GTSAC	6 cut(s)	931, 1036, 1246, 1666, 1771, 2026
PciSI	GCTCTTC	1 cut(s)	1623
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 518, 731
PctI	GAATGC	1 cut(s)	1406
PdmI	GAANNNNTTC	2 cut(s)	1649, 1742
PfeI	GAWTC	4 cut(s)	889, 1084, 1842, 1981
PflFI	GACNNNGTC	1 cut(s)	1128
PflMI	CCANNNNNTGG	1 cut(s)	2234
PfoI	TCCNGGA	1 cut(s)	1761
PkrI	GCNGC	4 cut(s)	148, 381, 652, 1799
PleI	GAGTC	2 cut(s)	368, 2091
PpsI	GAGTC	2 cut(s)	368, 2091
Ppu21I	YACGTR	2 cut(s)	726, 1461
PshBI	ATTAAT	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	384
PsyI	GACNNNGTC	1 cut(s)	1128
RsaI	GTAC	4 cut(s)	677, 1314, 1363, 1988
RsaNI	GTAC	4 cut(s)	676, 1313, 1362, 1987
RseI	CAYNNNNRTG	1 cut(s)	1554
SalI	GTCGAC	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	1623
SaqAI	TTAA	8 cut(s)	462, 471, 846, 1187, 1695, 1815, 2046, 2190
SatI	GCNGC	4 cut(s)	147, 380, 651, 1798
Sau3AI	GATC	6 cut(s)	791, 1053, 1516, 1578, 1873, 1893
Sau96I	GGNCC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	1363
SchI	GAGTC	2 cut(s)	368, 2092
ScrFI	CCNGG	3 cut(s)	302, 501, 1763
SduI	GDGCHC	1 cut(s)	214
SfcI	CTRYAG	2 cut(s)	380, 1672
SgrDI	CGTCGACG	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	1554
SmlI	CTYRAG	3 cut(s)	92, 164, 893
SmoI	CTYRAG	3 cut(s)	92, 164, 893
SnaBI	TACGTA	2 cut(s)	726, 1461
SpeI	ACTAGT	1 cut(s)	1501
SsiI	CCGC	9 cut(s)	43, 147, 229, 277, 297, 404, 650, 653, 1009
SspMI	CTAG	2 cut(s)	546, 1502
StyD4I	CCNGG	3 cut(s)	300, 499, 1761
StyI	CCWWGG	2 cut(s)	2197, 2211
TaaI	ACNGT	6 cut(s)	334, 1202, 1676, 1891, 2026, 2032
TaiI	ACGT	7 cut(s)	321, 728, 737, 1148, 1350, 1463, 1935
TaqI	TCGA	6 cut(s)	177, 336, 411, 794, 859, 1087
TatI	WGTACW	4 cut(s)	675, 1312, 1361, 1986
TauI	GCSGC	2 cut(s)	149, 653
TfiI	GAWTC	4 cut(s)	889, 1084, 1842, 1981
Tru1I	TTAA	8 cut(s)	462, 471, 846, 1187, 1695, 1815, 2046, 2190
Tru9I	TTAA	8 cut(s)	462, 471, 846, 1187, 1695, 1815, 2046, 2190
TscAI	CASTG	7 cut(s)	368, 652, 1378, 1681, 1896, 2046, 2065
TseFI	GTSAC	6 cut(s)	931, 1036, 1246, 1666, 1771, 2026
TseI	GCWGC	2 cut(s)	379, 1797
Tsp45I	GTSAC	6 cut(s)	931, 1036, 1246, 1666, 1771, 2026
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	7 cut(s)	368, 652, 1378, 1681, 1896, 2046, 2065
Tth111I	GACNNNGTC	1 cut(s)	1128
Van91I	CCANNNNNTGG	1 cut(s)	2234
VspI	ATTAAT	1 cut(s)	846
XagI	CCTNNNNNAGG	2 cut(s)	311, 1835
XapI	RAATTY	6 cut(s)	442, 658, 1078, 1559, 1811, 2173
XbaI	TCTAGA	1 cut(s)	545
XmiI	GTMKAC	3 cut(s)	336, 617, 1148
XmnI	GAANNNNTTC	2 cut(s)	1649, 1742
XspI	CTAG	2 cut(s)	546, 1502
ZraI	GACGTC	1 cut(s)	319
ZrmI	AGTACT	1 cut(s)	1363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.