Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Forward (+)

54935944 .. 54938955

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014575

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGAGTTCCTCAAATAATTCACAAGTGTATGGAGCCACGGATGCCAACAAGGGAACATCTTCAACAACCCCAAAAGGCAAAGGATCCAAATTGCCTCCACCAGAGCAAGTTACGTGCCCGCCAGCCCCGAAACGTCCACCTCCAAAAAGTGGGGTAGCCACCAAAGGTCTGGGCCAAACCTTTGTTTTTCCTGCAATCTACCCGTTGGATCGGCTCTGCCCGACCCGGCCCACAAAACTGAACAAACTCACAGTTCCAAAATCTGGTACTTTTTACCAGAAAGGTTTCATCTTCTCTTTTAGTTCCCGCCGTGCTTCTGGGTTCCGGCGAACCTCAGCTTTCATTATTACCGATATGCCCCTCCCAAGACCCCATATTCCAACCCAGTCTTCCTTCCGCTTCTCTCCCTCCGACGCCCTCCTCGCCGACAAAGCAATCGCCTACCTCAAGCGCCACCCCCACAACCTCAACTCTCTCTCTTCCCATTTCACCCCTGAAGCCGCCTCCTGCTTACTCCTCAAATCCCAATTCGACCAAACCCTAACCCTAAAGTTCCTCAATTGGGCTCGCAACCACCACCACCGCTTCTTCACCTTCCAGAGCAAGTGCCTCGCACTCCACATCCTCACCCGCTTCAAGCTCTACAAGTCCGCCCAGGCCCTCGCCGAGGACGTCGCCGTCAACACCGTCGACGACAAGGGCAATTTGGTCTTTCAGTGCCTCACTGACTCGTTGCAGGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATTTCGTTGATCAGGCTATTAACATTGTTAACTTAGCTAAAGCTCATGGATTTATGCCTGGTGTGATTTCGTATAATGCGATTTTAGATGCTGTGATTATGTCTAGAGGGTCTGTTCAGTTTGCTGAGGAGGTTTTTAGTGAGATGATTAGGAATGGGGTTTCGCCGAATGTGTATACGTATAACATTTTGATTAGGGGTTTCAGTGCGGCGGGGAATTTGGAAATGGTGTTGTATTTTTGGAGTGAAATGGAGAGGAACGGGTGTTTGCCGAATGTGGTCACGTATAATACGTTGATCGATGCTTATTGTAAGTTGAAGAGGATGGATGATGCGTTCGGATTATTGAGATCGATGGCATTGAAGGGTTTGGAGCCTAATTTGATTTCGTATAATGTGGTGATTAATGGGTTGTGTCGAGAAGGGAGGATGAATGAGACTGGTCAGATTCTTGAGGAGATGAAAAGAAAGGGTTTTGTTCCTGACGAGGTGACGAATAATACACTCATTAGTGGGTATTGCAAGGAAGGTAATTTTCACCAAGCGCTTGTGTTGCAAGAGGAGATGCAGAGGAATGGCTTGTCTCCGAATGTTGTCACTTATACAGCATTGATCAATGCCATGTGTAAGGCTAAGAATTTGAATCGAGCAATGGAGTTTTTTGAGCAGATGCGTGTTAGAGGACTTCGTCCAAATGAGAGGACATATACTACATTGATAGATGGCTTTGCCCAACAAGGGCTCTTAAATGAAGCTTACGGTCTTCTGAATGAAATGGTTGGGGATGGATTTTCTCCTTCAGTTGTGACTTACAATGCCCTCATCAATGGATACTGCTTATTAGGCAGGATGGAAGAGGCAATGGGAATTGTACAAGATATGGTAGGGAAAGGGTTATCCCCTGATGTAGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAACTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATCACCCGATGCTGTTACCTATTCATCACTAATTCAAGGTGTCTGTCAGCAAGGAAGACTAGTTGACGCTTGTGATCTCTTCCAAGAAATGATAAGTATGGGTTTGCATCCTGATGAATTCACATACACAACCTTGATCAATGCTTACTGCAAGGAAGGGGATTTGAATAAGGCTCTTCAGTTGAATGATGAAATGATAAAGAAAGGTTTCCTACCTGATGTTGTGACCTACAGTGTGCTTATCAATGGACTTAACAAACAAGCTCGGACAAGAGAAGCAAAGAAGCTTCTACTCAAGTTGTTCTGTGATAACTCTGTCCCAGATGATGTCACATACAATACTCTAATAGAGAGCTGCACGAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATCAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGAAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTGTGACAGTTATTGCACTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACTCTGAGGAGCTGTGAGGTTACTGATGCTGAGCTTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTCCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

872

Amino Acids

96.59

Weight (kDa)

8.07

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	275 - 331	2.4e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	277 - 392	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	285 - 333	1.9e-13	PPR repeat family
PPR_3	PF13812	310 - 369	3.7e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	317 - 349	5.2e-06	PPR repeat
PPR	PF01535	324 - 354	2.2e-06	PPR repeat
PPR_2	PF13041	325 - 370	2.3e-15	PPR repeat family
PPR_3	PF13812	347 - 401	7.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	352 - 384	8.7e-14	PPR repeat
PPR_2	PF13041	356 - 405	9.5e-19	PPR repeat family
PPR	PF01535	359 - 388	5.8e-08	PPR repeat
PPR_1	PF12854	387 - 420	3.3e-10	PPR repeat
PPR_2	PF13041	391 - 436	2.8e-13	PPR repeat family
PPR	PF01535	394 - 424	8.3e-07	PPR repeat
PPR_long	PF17177	409 - 521	6.1e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	415 - 473	2.7e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	422 - 454	1.1e-09	PPR repeat
PPR_2	PF13041	426 - 475	2.6e-18	PPR repeat family
PPR	PF01535	432 - 459	3.5e-06	PPR repeat
PPR_3	PF13812	450 - 497	9.5e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	457 - 490	3.2e-13	PPR repeat
PPR_2	PF13041	461 - 509	7.6e-19	PPR repeat family
PPR	PF01535	464 - 494	2.8e-07	PPR repeat
TPR_24	PF23276	465 - 557	1.6e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	480 - 571	3.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	492 - 543	3.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	492 - 525	2.1e-11	PPR repeat
PPR	PF01535	500 - 529	3e-07	PPR repeat
PPR_2	PF13041	501 - 544	2.8e-13	PPR repeat family
PPR_long	PF17177	514 - 617	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	527 - 560	5e-11	PPR repeat
PPR_2	PF13041	531 - 580	1.5e-17	PPR repeat family
PPR	PF01535	534 - 564	9.4e-09	PPR repeat
PPR_3	PF13812	555 - 611	3.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	562 - 595	5.4e-10	PPR repeat
PPR_2	PF13041	566 - 615	2.6e-17	PPR repeat family
PPR_long	PF17177	583 - 680	9.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	597 - 629	5.2e-12	PPR repeat
PPR	PF01535	604 - 634	4.3e-07	PPR repeat
PPR_2	PF13041	608 - 650	7.7e-14	PPR repeat family
PPR_3	PF13812	625 - 681	3.5e-10	Pentatricopeptide repeat domain
TPR_24	PF23276	627 - 720	2.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	632 - 664	1.5e-13	PPR repeat
PPR_2	PF13041	637 - 684	2.5e-18	PPR repeat family
PPR	PF01535	639 - 669	4.1e-08	PPR repeat
PPR_1	PF12854	754 - 784	3e-06	PPR repeat
PPR_2	PF13041	756 - 803	1.4e-08	PPR repeat family
PPR	PF01535	760 - 789	1e-05	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	677
AatII	GACGTC	1 cut(s)	675
Acc36I	ACCTGC	1 cut(s)	727
AccB7I	CCANNNNNTGG	3 cut(s)	149, 263, 2588
AccI	GTMKAC	2 cut(s)	690, 971
AclWI	GGATC	3 cut(s)	78, 91, 216
AcoI	YGGCCR	1 cut(s)	2562
AcsI	RAATTY	5 cut(s)	796, 1012, 1432, 1913, 2165
AcuI	CTGAAG	3 cut(s)	516, 1578, 1958
AcyI	GRCGYC	2 cut(s)	414, 672
AfaI	GTAC	4 cut(s)	268, 1668, 1717, 2342
AfeI	AGCGCT	2 cut(s)	1341, 2599
AfiI	CCNNNNNNNGG	7 cut(s)	149, 263, 562, 667, 1533, 2191, 2588
AhlI	ACTAGT	1 cut(s)	1855
AjnI	CCWGG	2 cut(s)	654, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AloI	GAACNNNNNNTCC	2 cut(s)	1115, 1147
Alw26I	GTCTC	3 cut(s)	1226, 1383, 2579
AlwI	GGATC	3 cut(s)	78, 91, 216
Aor51HI	AGCGCT	2 cut(s)	1341, 2599
AoxI	GGCC	4 cut(s)	172, 227, 657, 2562
ApeKI	GCWGC	1 cut(s)	2151
ApoI	RAATTY	5 cut(s)	796, 1012, 1432, 1913, 2165
AseI	ATTAAT	1 cut(s)	1200
Asp700I	GAANNNNTTC	3 cut(s)	58, 284, 2003
AspLEI	GCGC	3 cut(s)	453, 1342, 2600
AspS9I	GGNCC	3 cut(s)	172, 228, 658
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	9 cut(s)	481, 583, 619, 787, 1207, 1297, 1325, 1791, 2567
BaeGI	GKGCMC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	2564
BamHI	GGATCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	568, 1539
BbsI	GAAGAC	3 cut(s)	381, 1550, 1858
BbvCI	CCTCAGC	2 cut(s)	334, 921
BbvI	GCAGC	1 cut(s)	2138
BccI	CCATC	8 cut(s)	1114, 1144, 1511, 1574, 1639, 1768, 1774, 2564
BceAI	ACGGC	2 cut(s)	294, 662
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BciT130I	CCWGG	2 cut(s)	656, 855
BciVI	GTATCC	1 cut(s)	1619
BclI	TGATCA	4 cut(s)	805, 1407, 1932, 2247
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	3 cut(s)	1226, 1383, 2579
BcuI	ACTAGT	1 cut(s)	1855
BfaI	CTAG	2 cut(s)	900, 1856
BfmI	CTRYAG	1 cut(s)	2026
BfoI	RGCGCY	3 cut(s)	454, 1343, 2601
BfuAI	ACCTGC	1 cut(s)	727
BfuI	GTATCC	1 cut(s)	1619
BisI	GCNGC	3 cut(s)	501, 1005, 2152
BlpI	GCTNAGC	1 cut(s)	2484
BlsI	GCNGC	3 cut(s)	502, 1006, 2153
BmcAI	AGTACT	1 cut(s)	1717
Bme1390I	CCNGG	3 cut(s)	226, 656, 855
BmgT120I	GGNCC	3 cut(s)	172, 228, 658
BmiI	GGNNCC	4 cut(s)	34, 85, 323, 1170
BmrFI	CCNGG	3 cut(s)	226, 656, 855
BmrI	ACTGGG	2 cut(s)	379, 1737
BmuI	ACTGGG	2 cut(s)	379, 1737
BpiI	GAAGAC	3 cut(s)	381, 1550, 1858
BpmI	CTGGAG	1 cut(s)	1772
Bpu10I	CCTNAGC	2 cut(s)	334, 921
Bpu1102I	GCTNAGC	1 cut(s)	2484
BpuEI	CTTGAG	3 cut(s)	431, 1268, 2075
BpuMI	CCSGG	1 cut(s)	226
Bsa29I	ATCGAT	2 cut(s)	1095, 1148
BsaAI	YACGTR	3 cut(s)	114, 975, 1080
BsaHI	GRCGYC	2 cut(s)	414, 672
BsaI	GGTCTC	1 cut(s)	2579
BsaJI	CCNNGG	5 cut(s)	36, 654, 666, 2551, 2565
Bsc4I	CCNNNNNNNGG	7 cut(s)	149, 263, 562, 667, 1533, 2191, 2588
Bse1I	ACTGG	4 cut(s)	385, 1240, 1732, 1755
Bse3DI	GCAATG	2 cut(s)	1452, 1662
BseBI	CCWGG	2 cut(s)	656, 855
BseCI	ATCGAT	2 cut(s)	1095, 1148
BseDI	CCNNGG	5 cut(s)	36, 654, 666, 2551, 2565
BseLI	CCNNNNNNNGG	7 cut(s)	149, 263, 562, 667, 1533, 2191, 2588
BseMI	GCAATG	2 cut(s)	1452, 1662
BseMII	CTCAG	6 cut(s)	348, 912, 2406, 2426, 2450, 2475
BseNI	ACTGG	4 cut(s)	385, 1240, 1732, 1755
BseRI	GAGGAG	6 cut(s)	410, 506, 938, 1265, 1370, 2476
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	2138
BsgI	GTGCAG	1 cut(s)	2137
BshFI	GGCC	4 cut(s)	174, 229, 659, 2564
BshVI	ATCGAT	2 cut(s)	1095, 1148
BsiSI	CCGG	2 cut(s)	226, 325
BslFI	GGGAC	1 cut(s)	2099
BslI	CCNNNNNNNGG	7 cut(s)	149, 263, 562, 667, 1533, 2191, 2588
BsmAI	GTCTC	3 cut(s)	1226, 1383, 2579
BsmFI	GGGAC	1 cut(s)	2099
BsmI	GAATGC	1 cut(s)	1760
BsnI	GGCC	4 cut(s)	174, 229, 659, 2564
Bso31I	GGTCTC	1 cut(s)	2579
Bsp1286I	GDGCHC	3 cut(s)	119, 568, 1539
Bsp1407I	TGTACA	2 cut(s)	1666, 2340
Bsp1720I	GCTNAGC	1 cut(s)	2484
BspANI	GGCC	4 cut(s)	174, 229, 659, 2564
BspCNI	CTCAG	6 cut(s)	347, 913, 2407, 2427, 2451, 2476
BspDI	ATCGAT	2 cut(s)	1095, 1148
BspLI	GGNNCC	4 cut(s)	34, 85, 323, 1170
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	3 cut(s)	78, 91, 216
BspQI	GCTCTTC	1 cut(s)	1977
BspTNI	GGTCTC	1 cut(s)	2579
BsrDI	GCAATG	2 cut(s)	1452, 1662
BsrGI	TGTACA	2 cut(s)	1666, 2340
BsrI	ACTGG	4 cut(s)	385, 1240, 1732, 1755
BssECI	CCNNGG	5 cut(s)	36, 654, 666, 2551, 2565
BssNAI	GTATAC	1 cut(s)	972
BssNI	GRCGYC	2 cut(s)	414, 672
BssT1I	CCWWGG	2 cut(s)	2551, 2565
Bst1107I	GTATAC	1 cut(s)	972
Bst2UI	CCWGG	2 cut(s)	656, 855
Bst4CI	ACNGT	7 cut(s)	253, 688, 1556, 2030, 2245, 2380, 2386
Bst6I	CTCTTC	5 cut(s)	484, 1109, 1644, 1880, 1977
BstACI	GRCGYC	2 cut(s)	414, 672
BstAUI	TGTACA	2 cut(s)	1666, 2340
BstBAI	YACGTR	3 cut(s)	114, 975, 1080
BstC8I	GCNNGC	5 cut(s)	119, 123, 568, 2490, 2596
BstDEI	CTNAG	8 cut(s)	334, 829, 921, 1428, 2415, 2435, 2459, 2484
BstDSI	CCRYGG	1 cut(s)	36
BstENI	CCTNNNNNAGG	2 cut(s)	665, 2189
BstH2I	RGCGCY	3 cut(s)	454, 1343, 2601
BstHHI	GCGC	3 cut(s)	453, 1342, 2600
BstMAI	GTCTC	3 cut(s)	1226, 1383, 2579
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 422, 431, 750, 1348, 1638, 2489, 2494
BstNI	CCWGG	2 cut(s)	656, 855
BstSCI	CCNGG	3 cut(s)	224, 654, 853
BstSFI	CTRYAG	1 cut(s)	2026
BstSLI	GKGCMC	1 cut(s)	119
BstSNI	TACGTA	1 cut(s)	975
BstV1I	GCAGC	1 cut(s)	2138
BstV2I	GAAGAC	3 cut(s)	381, 1550, 1858
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	83
BstZ17I	GTATAC	1 cut(s)	972
Bsu15I	ATCGAT	2 cut(s)	1095, 1148
BsuI	GTATCC	1 cut(s)	1619
BsuRI	GGCC	4 cut(s)	174, 229, 659, 2564
BsuTUI	ATCGAT	2 cut(s)	1095, 1148
BtgI	CCRYGG	1 cut(s)	36
BtsIMutI	CAGTG	8 cut(s)	722, 723, 1006, 1725, 2035, 2250, 2393, 2412
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	5 cut(s)	119, 123, 568, 2490, 2596
CfoI	GCGC	3 cut(s)	453, 1342, 2600
Cfr13I	GGNCC	3 cut(s)	172, 228, 658
ClaI	ATCGAT	2 cut(s)	1095, 1148
CseI	GACGC	2 cut(s)	422, 1871
Csp6I	GTAC	4 cut(s)	267, 1667, 1716, 2341
CviAII	CATG	4 cut(s)	842, 1417, 2203, 2297
CviQI	GTAC	4 cut(s)	267, 1667, 1716, 2341
DdeI	CTNAG	8 cut(s)	334, 829, 921, 1428, 2415, 2435, 2459, 2484
DrdI	GACNNNNNNGTC	1 cut(s)	677
DseDI	GACNNNNNNGTC	1 cut(s)	677
EaeI	YGGCCR	1 cut(s)	2562
Eam1104I	CTCTTC	5 cut(s)	484, 1109, 1644, 1880, 1977
EarI	CTCTTC	5 cut(s)	484, 1109, 1644, 1880, 1977
EciI	GGCGGA	1 cut(s)	640
Eco105I	TACGTA	1 cut(s)	975
Eco130I	CCWWGG	2 cut(s)	2551, 2565
Eco24I	GRGCYC	2 cut(s)	568, 1539
Eco31I	GGTCTC	1 cut(s)	2579
Eco47III	AGCGCT	2 cut(s)	1341, 2599
Eco57I	CTGAAG	3 cut(s)	516, 1578, 1958
EcoNI	CCTNNNNNAGG	2 cut(s)	665, 2189
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRI	GAATTC	1 cut(s)	1913
EcoRII	CCWGG	2 cut(s)	654, 853
EcoT14I	CCWWGG	2 cut(s)	2551, 2565
EcoT38I	GRGCYC	2 cut(s)	568, 1539
ErhI	CCWWGG	2 cut(s)	2551, 2565
FaeI	CATG	4 cut(s)	845, 1420, 2206, 2300
FaqI	GGGAC	1 cut(s)	2099
FatI	CATG	4 cut(s)	841, 1416, 2202, 2296
FauI	CCCGC	4 cut(s)	126, 314, 638, 1000
FbaI	TGATCA	4 cut(s)	805, 1407, 1932, 2247
FblI	GTMKAC	2 cut(s)	690, 971
Fnu4HI	GCNGC	3 cut(s)	501, 1005, 2152
FriOI	GRGCYC	2 cut(s)	568, 1539
Fsp4HI	GCNGC	3 cut(s)	501, 1005, 2152
FspBI	CTAG	2 cut(s)	900, 1856
GlaI	GCGC	3 cut(s)	452, 1341, 2599
GluI	GCNGC	3 cut(s)	501, 1005, 2152
GsuI	CTGGAG	1 cut(s)	1772
HaeII	RGCGCY	3 cut(s)	454, 1343, 2601
HaeIII	GGCC	4 cut(s)	174, 229, 659, 2564
HapII	CCGG	2 cut(s)	226, 325
HgaI	GACGC	2 cut(s)	422, 1871
HhaI	GCGC	3 cut(s)	453, 1342, 2600
Hin1I	GRCGYC	2 cut(s)	414, 672
Hin1II	CATG	4 cut(s)	845, 1420, 2206, 2300
Hin6I	GCGC	3 cut(s)	451, 1340, 2598
HinP1I	GCGC	3 cut(s)	451, 1340, 2598
HincII	GTYRAC	4 cut(s)	682, 691, 826, 1861
HindII	GTYRAC	4 cut(s)	682, 691, 826, 1861
HindIII	AAGCTT	2 cut(s)	1548, 2081
HinfI	GANTC	6 cut(s)	728, 1243, 1438, 2196, 2335, 2437
HpaI	GTTAAC	1 cut(s)	826
HpaII	CCGG	2 cut(s)	226, 325
HphI	GGTGA	9 cut(s)	481, 583, 619, 787, 1207, 1297, 1325, 1791, 2567
Hpy166II	GTNNAC	6 cut(s)	137, 682, 691, 826, 972, 1861
Hpy188I	TCNGA	8 cut(s)	412, 1136, 1242, 1383, 1563, 2064, 2325, 2460
Hpy188III	TCNNGA	8 cut(s)	598, 900, 1214, 1247, 1277, 1745, 1907, 2251
Hpy8I	GTNNAC	6 cut(s)	137, 682, 691, 826, 972, 1861
Hpy99I	CGWCG	4 cut(s)	416, 677, 692, 695
HpyCH4III	ACNGT	7 cut(s)	253, 688, 1556, 2030, 2245, 2380, 2386
HpyCH4IV	ACGT	7 cut(s)	113, 133, 672, 974, 1079, 1088, 2286
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 422, 431, 750, 1348, 1638, 2489, 2494
HpyF3I	CTNAG	8 cut(s)	334, 829, 921, 1428, 2415, 2435, 2459, 2484
HpySE526I	ACGT	7 cut(s)	113, 133, 672, 974, 1079, 1088, 2286
Hsp92I	GRCGYC	2 cut(s)	414, 672
Hsp92II	CATG	4 cut(s)	845, 1420, 2206, 2300
HspAI	GCGC	3 cut(s)	451, 1340, 2598
Ksp22I	TGATCA	4 cut(s)	805, 1407, 1932, 2247
KspAI	GTTAAC	1 cut(s)	826
LguI	GCTCTTC	1 cut(s)	1977
LmnI	GCTCC	5 cut(s)	32, 1168, 2273, 2463, 2591
Lsp1109I	GCAGC	1 cut(s)	2138
MaeI	CTAG	2 cut(s)	900, 1856
MaeII	ACGT	7 cut(s)	113, 133, 672, 974, 1079, 1088, 2286
MfeI	CAATTG	1 cut(s)	559
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	3 cut(s)	119, 568, 1539
MlsI	TGGCCA	1 cut(s)	2564
MluNI	TGGCCA	1 cut(s)	2564
MlyI	GAGTC	2 cut(s)	722, 2446
MmeI	TCCRAC	3 cut(s)	186, 404, 435
Mox20I	TGGCCA	1 cut(s)	2564
MroXI	GAANNNNTTC	3 cut(s)	58, 284, 2003
MscI	TGGCCA	1 cut(s)	2564
MseI	TTAA	8 cut(s)	816, 825, 1200, 1541, 2049, 2169, 2400, 2544
MslI	CAYNNNNRTG	1 cut(s)	1908
Msp20I	TGGCCA	1 cut(s)	2564
MspI	CCGG	2 cut(s)	226, 325
MspR9I	CCNGG	3 cut(s)	226, 656, 855
MunI	CAATTG	1 cut(s)	559
Mva1269I	GAATGC	1 cut(s)	1760
MvaI	CCWGG	2 cut(s)	656, 855
MwoI	GCNNNNNNNGC	8 cut(s)	41, 422, 431, 750, 1348, 1638, 2489, 2494
NciI	CCSGG	1 cut(s)	226
NlaIII	CATG	4 cut(s)	845, 1420, 2206, 2300
NlaIV	GGNNCC	4 cut(s)	34, 85, 323, 1170
NmeAIII	GCCGAG	2 cut(s)	691, 734
NmuCI	GTSAC	7 cut(s)	1075, 1285, 1390, 1600, 2020, 2125, 2380
PciSI	GCTCTTC	1 cut(s)	1977
PcsI	WCGNNNNNNNCGW	3 cut(s)	669, 872, 1085
PctI	GAATGC	1 cut(s)	1760
PdmI	GAANNNNTTC	3 cut(s)	58, 284, 2003
PfeI	GAWTC	4 cut(s)	1243, 1438, 2196, 2335
PflFI	GACNNNGTC	1 cut(s)	1482
PflMI	CCANNNNNTGG	3 cut(s)	149, 263, 2588
PkrI	GCNGC	3 cut(s)	502, 1006, 2153
PleI	GAGTC	2 cut(s)	722, 2445
PpsI	GAGTC	2 cut(s)	722, 2445
Ppu21I	YACGTR	3 cut(s)	114, 975, 1080
PshBI	ATTAAT	1 cut(s)	1200
Psp6I	CCWGG	2 cut(s)	654, 853
PspGI	CCWGG	2 cut(s)	654, 853
PspN4I	GGNNCC	4 cut(s)	34, 85, 323, 1170
PspPI	GGNCC	3 cut(s)	172, 228, 658
PsuI	RGATCY	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	1482
RsaI	GTAC	4 cut(s)	268, 1668, 1717, 2342
RsaNI	GTAC	4 cut(s)	267, 1667, 1716, 2341
RseI	CAYNNNNRTG	1 cut(s)	1908
SalI	GTCGAC	1 cut(s)	689
SapI	GCTCTTC	1 cut(s)	1977
SaqAI	TTAA	8 cut(s)	816, 825, 1200, 1541, 2049, 2169, 2400, 2544
SatI	GCNGC	3 cut(s)	501, 1005, 2152
Sau96I	GGNCC	3 cut(s)	172, 228, 658
ScaI	AGTACT	1 cut(s)	1717
SchI	GAGTC	2 cut(s)	722, 2446
ScrFI	CCNGG	3 cut(s)	226, 656, 855
SduI	GDGCHC	3 cut(s)	119, 568, 1539
SfcI	CTRYAG	1 cut(s)	2026
SgrDI	CGTCGACG	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	1908
SmlI	CTYRAG	3 cut(s)	446, 1247, 2090
SmoI	CTYRAG	3 cut(s)	446, 1247, 2090
SnaBI	TACGTA	1 cut(s)	975
SpeI	ACTAGT	1 cut(s)	1855
SspMI	CTAG	2 cut(s)	900, 1856
StyD4I	CCNGG	3 cut(s)	224, 654, 853
StyI	CCWWGG	2 cut(s)	2551, 2565
TaaI	ACNGT	7 cut(s)	253, 688, 1556, 2030, 2245, 2380, 2386
TaiI	ACGT	7 cut(s)	116, 136, 675, 977, 1082, 1091, 2289
TaqI	TCGA	7 cut(s)	531, 690, 765, 1095, 1148, 1213, 1441
TatI	WGTACW	3 cut(s)	1666, 1715, 2340
TauI	GCSGC	2 cut(s)	503, 1007
TfiI	GAWTC	4 cut(s)	1243, 1438, 2196, 2335
Tru1I	TTAA	8 cut(s)	816, 825, 1200, 1541, 2049, 2169, 2400, 2544
Tru9I	TTAA	8 cut(s)	816, 825, 1200, 1541, 2049, 2169, 2400, 2544
TscAI	CASTG	8 cut(s)	722, 730, 1006, 1732, 2035, 2250, 2400, 2419
TseFI	GTSAC	7 cut(s)	1075, 1285, 1390, 1600, 2020, 2125, 2380
TseI	GCWGC	1 cut(s)	2151
Tsp45I	GTSAC	7 cut(s)	1075, 1285, 1390, 1600, 2020, 2125, 2380
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	8 cut(s)	722, 730, 1006, 1732, 2035, 2250, 2400, 2419
Tth111I	GACNNNGTC	1 cut(s)	1482
Van91I	CCANNNNNTGG	3 cut(s)	149, 263, 2588
VspI	ATTAAT	1 cut(s)	1200
XagI	CCTNNNNNAGG	2 cut(s)	665, 2189
XapI	RAATTY	5 cut(s)	796, 1012, 1432, 1913, 2165
XbaI	TCTAGA	1 cut(s)	899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	2 cut(s)	690, 971
XmnI	GAANNNNTTC	3 cut(s)	58, 284, 2003
XspI	CTAG	2 cut(s)	900, 1856
ZraI	GACGTC	1 cut(s)	673
ZrmI	AGTACT	1 cut(s)	1717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.