Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042869.1

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

1885 .. 2226

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042869.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggagatggtggagaagggtatatcacccgatgcagttacctattcatctctaattcaagaagggagattagttgacgcttgtgatctcttccaagaaatgataagtatggggttgcgtcctgatgaattcacatacacaaccttgatcaatgcttactgcaaggaaggggatttgaataaggctcttcacttgaatgatgaaatgataaagaaaggtttcctacctgatgttgtgacctacagtgtgcttatcaatggacttaacaaacaatctcggacaagagaagcaaagaagcttctactcaagttgttctatgataactctagctgtcccagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

113

Amino Acids

12.84

Weight (kDa)

5.38

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	59, 178, 196
AluBI	AGCT	2 cut(s)	298, 330
AluI	AGCT	2 cut(s)	298, 330
ApoI	RAATTY	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	18
BclI	TGATCA	1 cut(s)	147
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	85, 147
BspQI	GCTCTTC	1 cut(s)	192
BssMI	GATC	2 cut(s)	85, 147
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	95, 192
BstKTI	GATC	2 cut(s)	88, 150
BstMBI	GATC	2 cut(s)	85, 147
BstSFI	CTRYAG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	250
CseI	GACGC	2 cut(s)	86, 107
CviJI	RGCY	3 cut(s)	185, 298, 330
CviKI_1	RGCY	3 cut(s)	185, 298, 330
DpnI	GATC	2 cut(s)	87, 149
DpnII	GATC	2 cut(s)	85, 147
Eam1104I	CTCTTC	2 cut(s)	95, 192
EarI	CTCTTC	2 cut(s)	95, 192
EcoRI	GAATTC	1 cut(s)	128
FaiI	YATR	4 cut(s)	23, 110, 136, 318
FaqI	GGGAC	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	147
FspBI	CTAG	1 cut(s)	327
HgaI	GACGC	2 cut(s)	86, 107
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	296
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	2 cut(s)	59, 122
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	10, 56, 161
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	35, 162
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	85, 147
LguI	GCTCTTC	1 cut(s)	192
LpnPI	CCDG	2 cut(s)	135, 240
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	37, 235
MalI	GATC	2 cut(s)	87, 149
MboI	GATC	2 cut(s)	85, 147
MboII	GAAGA	2 cut(s)	82, 179
MluCI	AATT	2 cut(s)	54, 128
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	195
NdeII	GATC	2 cut(s)	85, 147
NmuCI	GTSAC	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	85, 147
SetI	ASST	7 cut(s)	44, 146, 220, 229, 242, 300, 332
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	54, 128
SspMI	CTAG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	245
TasI	AATT	2 cut(s)	54, 128
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	36, 141, 216
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.