Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

14255556 .. 14259223

Gene Structure 3668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGCCCATCCCAAGACCCCAAATTCCAATCCAGTCCTCCTTCCGCTTCTCTCCCTCCGACGCCCTCCTCGCCGACAAAGCAATCACCTACCTCAAGCGCCACCCCCACAACCTCAACTCTCTCTCTTCCCATTTCACCCCTGAAGCCGCCTCCTGCTTACTCCTCAAGTCCCAATTCGACCAAACCCTAACCCTAAAGTTCCTCAGTTGGGCTCGCAACCACCACCACCACCGCTTCTTCACCTTCCAGAGCAAGTGCCTCGCCCTCCACATCCTCACCCGCTTCAAGCTCTACAAGTCCGCCCAGGCCCTCGCCGAGGACGTCGCCGTCAACACCGTCGACGACAGGGGCAATTTGGTCTTTCAGTGCCTCACGGACTCGCTGCAGGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATTTCGTTGATAAAGCTATTAACATTGTTAACTTAGCTAAAGCTCATGGATTTATGCCCGGTGTGCTTTCGTATAATGCGATTTTAGATGCTGTGATTAGGTCTAGAAGGTCTGCTCACTTTGCTGAGGAGGTTTTTAGTGAGATGATTAGGAATGGGGTTTCGCCGAATGTGTATACATATAACATTTTAATTAGGGGTTTCAGTGCGGCGGGGAATTTGGAAATGGTGTTGTACTTTTGGAGTGAAATGGAGAGGAATGGGTGTCTGCCGAATGTGGTTACGTATAATACGTTGATGGATGCTTATTGTAAGTTGAAGAGGATGGATGACGCGTTCGGATTGTTGAGATCGATGGCATTGAAGGGTTTGGAGCCTAATTTGATTTCGTATAATGTGGTGATTAATGGGTTGTGTCGAGAAGGGAGGATGAATGAGACTGGTCAGATTCTTGAGGAGATGAAAAGGAAGGGTTTTGTTCCTGACGAGGTGACGAATAATACACTCATTAGTGGGTATTGCAAGGAAGGTAATTTTCACCAAGCACTTGTGTTGCAAGAGGAGATGCGGAGGAATGGCTTGTCTCCGAATGTTGTCACTTATACAGCATTGATCAATGCCATGTGTAAGGCTAAGAATTTGAATCGAGCAATGGAGTTTTTTGAGCAGATGCGTGTTAGAGGACTTCGTCCAAATGAGAGGACGTATACGACATTGATAGATGGCTTCGCCCAACAAGGGTTCTTAAATGAAGCTTACGGTCTTCTGAATGAAATGGTTGGGGGTGGATTTTCTCCTTCAGTTGTGACTTACAATGCCCTTATCAATGGATACTGCTTATTAGGCAGGATGGAAGAGGCAATGGGAATTGTACAAGATATGGTAGGGAAAGGGTTATCCCCTGATGTAGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAACTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATCACCCGATGCTGTTACCTATTCATCACTAATTCAAGGTGTCTGTCAGCAAGGGAGACTAGTTGACGCTTGTGATCTCTTCCAAGAAATGATAAGTATGGGTTTGCATCCTGATGAATTCACATACACAACCTTGATCAATGCTTACTGCAAGGAAGGGGATTTGAATAAGGCTCTTCAGTTGAATGATGAAATGATAAAGAAAGGTTTCCTACCTGATGTTGTGACCTACAGTGTGCTTATCAATGGACTTAACAAACAAGCTAGGACAAGAGAAGCAAAGAAGCTTCTACTCAAGTTGTTCTATGATAACTCTGTCCCAGATGATGTCACATACAATACTCTAATAGAGAGCTGCACGAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAGGTTTTTGAAACAGTGATCAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGGGGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTCTAACTGTTATTGCGCTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACTCTGAGGAGCTGTGAGCTTACTGATGCTGAGCTTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTGCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGGGGGGGTAAATATTGTCTTATTAAAAAGAGAAAAAAATGATATCAAGCATTCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

771

Amino Acids

86.25

Weight (kDa)

6.57

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	151 - 280	3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	168 - 216	1.2e-12	PPR repeat family
PPR_3	PF13812	193 - 252	3.1e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	200 - 232	4.5e-06	PPR repeat
PPR	PF01535	207 - 237	1.9e-06	PPR repeat
PPR_2	PF13041	208 - 253	5.8e-15	PPR repeat family
PPR_3	PF13812	231 - 284	2.2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	235 - 267	1.7e-12	PPR repeat
PPR_2	PF13041	239 - 288	1.6e-18	PPR repeat family
PPR	PF01535	242 - 271	1.4e-07	PPR repeat
PPR_1	PF12854	270 - 303	2.9e-10	PPR repeat
PPR_2	PF13041	274 - 320	5.6e-14	PPR repeat family
PPR	PF01535	277 - 307	7.2e-07	PPR repeat
PPR_long	PF17177	292 - 406	2.4e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	298 - 356	9.2e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	305 - 338	6.6e-10	PPR repeat
PPR_2	PF13041	309 - 358	2.3e-18	PPR repeat family
PPR	PF01535	315 - 342	2.6e-06	PPR repeat
PPR_3	PF13812	334 - 384	8.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	340 - 373	2.7e-13	PPR repeat
PPR_2	PF13041	344 - 392	6.5e-19	PPR repeat family
PPR	PF01535	347 - 377	2.4e-07	PPR repeat
TPR_24	PF23276	348 - 440	8.2e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	363 - 454	4.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	369 - 426	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	375 - 408	7.4e-11	PPR repeat
PPR	PF01535	383 - 411	1.6e-06	PPR repeat
PPR_2	PF13041	385 - 427	2e-11	PPR repeat family
PPR_long	PF17177	397 - 501	2.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	411 - 443	7.1e-11	PPR repeat
PPR_2	PF13041	414 - 463	1.3e-17	PPR repeat family
PPR	PF01535	417 - 447	8.1e-09	PPR repeat
PPR_3	PF13812	438 - 494	3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	445 - 478	4.7e-10	PPR repeat
PPR_2	PF13041	449 - 498	2.3e-17	PPR repeat family
PPR_long	PF17177	466 - 562	7.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	480 - 512	4.5e-12	PPR repeat
PPR	PF01535	487 - 517	3.8e-07	PPR repeat
PPR_2	PF13041	487 - 533	2.8e-16	PPR repeat family
PPR_3	PF13812	508 - 564	3e-10	Pentatricopeptide repeat domain
TPR_24	PF23276	510 - 603	1.6e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	515 - 547	1.3e-13	PPR repeat
PPR_2	PF13041	519 - 567	3.3e-19	PPR repeat family
PPR	PF01535	522 - 552	3.5e-08	PPR repeat
PPR_1	PF12854	550 - 579	9.3e-06	PPR repeat
PPR_2	PF13041	639 - 686	2.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AatII	GACGTC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	2237
AccI	GTMKAC	3 cut(s)	339, 620, 1151
AccII	CGCG	1 cut(s)	779
AciI	CCGC	9 cut(s)	43, 147, 232, 280, 300, 407, 653, 656, 1012
AcoI	YGGCCR	1 cut(s)	2211
AcsI	RAATTY	6 cut(s)	21, 445, 661, 1081, 1562, 1814
AcuI	CTGAAG	3 cut(s)	162, 1227, 1607
AcyI	GRCGYC	2 cut(s)	60, 321
AfaI	GTAC	4 cut(s)	680, 1317, 1366, 1991
AfeI	AGCGCT	1 cut(s)	2248
AfiI	CCNNNNNNNGG	5 cut(s)	208, 316, 1182, 1840, 2237
AflIII	ACRYGT	1 cut(s)	777
AhlI	ACTAGT	1 cut(s)	1504
AjnI	CCWGG	1 cut(s)	303
AloI	GAACNNNNNNTCC	2 cut(s)	764, 796
Alw26I	GTCTC	3 cut(s)	875, 1032, 1495
Aor51HI	AGCGCT	1 cut(s)	2248
AoxI	GGCC	2 cut(s)	306, 2211
ApeKI	GCWGC	2 cut(s)	382, 1800
ApoI	RAATTY	6 cut(s)	21, 445, 661, 1081, 1562, 1814
AseI	ATTAAT	1 cut(s)	849
Asp700I	GAANNNNTTC	1 cut(s)	1652
AspLEI	GCGC	3 cut(s)	99, 2044, 2249
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	504
BalI	TGGCCA	1 cut(s)	2213
BanII	GRGCYC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	1199
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	369, 1787
BccI	CCATC	9 cut(s)	14, 736, 763, 793, 1160, 1288, 1417, 1423, 2213
BceAI	ACGGC	1 cut(s)	311
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	1268
BclI	TGATCA	3 cut(s)	1056, 1581, 1896
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	3 cut(s)	875, 1032, 1495
BcuI	ACTAGT	1 cut(s)	1504
BfaI	CTAG	3 cut(s)	549, 1505, 1710
BfmI	CTRYAG	2 cut(s)	383, 1675
BfoI	RGCGCY	2 cut(s)	100, 2250
BfuAI	ACCTGC	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	1268
BisI	GCNGC	4 cut(s)	147, 383, 654, 1801
BlpI	GCTNAGC	1 cut(s)	2133
BlsI	GCNGC	4 cut(s)	148, 384, 655, 1802
BmcAI	AGTACT	1 cut(s)	1366
Bme1390I	CCNGG	2 cut(s)	305, 504
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	819
BmrFI	CCNGG	2 cut(s)	305, 504
BmrI	ACTGGG	1 cut(s)	1386
BmsI	GCATC	9 cut(s)	523, 736, 999, 1104, 1399, 1444, 1561, 2119, 2173
BmuI	ACTGGG	1 cut(s)	1386
BpiI	GAAGAC	1 cut(s)	1199
BpmI	CTGGAG	1 cut(s)	1421
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	2133
BpuEI	CTTGAG	4 cut(s)	77, 149, 917, 1724
BpuMI	CCSGG	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	797
BsaAI	YACGTR	1 cut(s)	729
BsaHI	GRCGYC	2 cut(s)	60, 321
BsaJI	CCNNGG	4 cut(s)	303, 315, 2200, 2214
Bsc4I	CCNNNNNNNGG	5 cut(s)	208, 316, 1182, 1840, 2237
Bse1I	ACTGG	4 cut(s)	31, 889, 1381, 1404
Bse3DI	GCAATG	2 cut(s)	1101, 1311
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	797
BseDI	CCNNGG	4 cut(s)	303, 315, 2200, 2214
BseLI	CCNNNNNNNGG	5 cut(s)	208, 316, 1182, 1840, 2237
BseMI	GCAATG	2 cut(s)	1101, 1311
BseMII	CTCAG	6 cut(s)	217, 561, 2055, 2075, 2099, 2124
BseNI	ACTGG	4 cut(s)	31, 889, 1381, 1404
BseRI	GAGGAG	6 cut(s)	56, 152, 587, 914, 1019, 2125
BseXI	GCAGC	2 cut(s)	369, 1787
BsgI	GTGCAG	2 cut(s)	1786, 2274
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	2 cut(s)	308, 2213
BshVI	ATCGAT	1 cut(s)	797
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	154, 1748
BslI	CCNNNNNNNGG	5 cut(s)	208, 316, 1182, 1840, 2237
BsmAI	GTCTC	3 cut(s)	875, 1032, 1495
BsmFI	GGGAC	2 cut(s)	154, 1748
BsmI	GAATGC	2 cut(s)	1409, 2305
BsnI	GGCC	2 cut(s)	308, 2213
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp1407I	TGTACA	2 cut(s)	1315, 1989
Bsp143I	GATC	6 cut(s)	794, 1056, 1519, 1581, 1876, 1896
Bsp1720I	GCTNAGC	1 cut(s)	2133
BspACI	CCGC	9 cut(s)	43, 147, 232, 280, 300, 407, 653, 656, 1012
BspANI	GGCC	2 cut(s)	308, 2213
BspCNI	CTCAG	6 cut(s)	216, 562, 2056, 2076, 2100, 2125
BspDI	ATCGAT	1 cut(s)	797
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	1 cut(s)	819
BspMAI	CTGCAG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	1626
BsrDI	GCAATG	2 cut(s)	1101, 1311
BsrGI	TGTACA	2 cut(s)	1315, 1989
BsrI	ACTGG	4 cut(s)	31, 889, 1381, 1404
BssECI	CCNNGG	4 cut(s)	303, 315, 2200, 2214
BssMI	GATC	6 cut(s)	794, 1056, 1519, 1581, 1876, 1896
BssNAI	GTATAC	2 cut(s)	621, 1152
BssNI	GRCGYC	2 cut(s)	60, 321
BssT1I	CCWWGG	2 cut(s)	2200, 2214
Bst1107I	GTATAC	2 cut(s)	621, 1152
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	5 cut(s)	337, 1205, 1679, 1894, 2035
Bst6I	CTCTTC	5 cut(s)	130, 758, 1293, 1529, 1626
BstACI	GRCGYC	2 cut(s)	60, 321
BstAUI	TGTACA	2 cut(s)	1315, 1989
BstBAI	YACGTR	1 cut(s)	729
BstC8I	GCNNGC	3 cut(s)	214, 2139, 2245
BstDEI	CTNAG	8 cut(s)	203, 478, 570, 1077, 2064, 2084, 2108, 2133
BstENI	CCTNNNNNAGG	2 cut(s)	314, 1838
BstFNI	CGCG	1 cut(s)	779
BstH2I	RGCGCY	2 cut(s)	100, 2250
BstHHI	GCGC	3 cut(s)	99, 2044, 2249
BstKTI	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
BstMAI	GTCTC	3 cut(s)	875, 1032, 1495
BstMBI	GATC	6 cut(s)	794, 1056, 1519, 1581, 1876, 1896
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 77, 399, 508, 566, 1287, 2138, 2143
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	303, 502
BstSFI	CTRYAG	2 cut(s)	383, 1675
BstSNI	TACGTA	1 cut(s)	729
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	2 cut(s)	369, 1787
BstV2I	GAAGAC	1 cut(s)	1199
BstZ17I	GTATAC	2 cut(s)	621, 1152
Bsu15I	ATCGAT	1 cut(s)	797
BsuI	GTATCC	1 cut(s)	1268
BsuRI	GGCC	2 cut(s)	308, 2213
BsuTUI	ATCGAT	1 cut(s)	797
BtsIMutI	CAGTG	6 cut(s)	371, 655, 1374, 1684, 1899, 2061
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	214, 2139, 2245
CfoI	GCGC	3 cut(s)	99, 2044, 2249
Cfr13I	GGNCC	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	797
CseI	GACGC	3 cut(s)	68, 785, 1520
Csp6I	GTAC	4 cut(s)	679, 1316, 1365, 1990
CviAII	CATG	4 cut(s)	491, 1066, 1852, 1946
CviQI	GTAC	4 cut(s)	679, 1316, 1365, 1990
DdeI	CTNAG	8 cut(s)	203, 478, 570, 1077, 2064, 2084, 2108, 2133
DpnI	GATC	6 cut(s)	796, 1058, 1521, 1583, 1878, 1898
DpnII	GATC	6 cut(s)	794, 1056, 1519, 1581, 1876, 1896
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	2211
Eam1104I	CTCTTC	5 cut(s)	130, 758, 1293, 1529, 1626
EarI	CTCTTC	5 cut(s)	130, 758, 1293, 1529, 1626
EciI	GGCGGA	1 cut(s)	289
Eco105I	TACGTA	1 cut(s)	729
Eco130I	CCWWGG	2 cut(s)	2200, 2214
Eco24I	GRGCYC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	2299
Eco47III	AGCGCT	1 cut(s)	2248
Eco57I	CTGAAG	3 cut(s)	162, 1227, 1607
EcoNI	CCTNNNNNAGG	2 cut(s)	314, 1838
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	1562
EcoRII	CCWGG	1 cut(s)	303
EcoRV	GATATC	1 cut(s)	2299
EcoT14I	CCWWGG	2 cut(s)	2200, 2214
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	2 cut(s)	2200, 2214
FaeI	CATG	4 cut(s)	494, 1069, 1855, 1949
FaqI	GGGAC	2 cut(s)	154, 1748
FatI	CATG	4 cut(s)	490, 1065, 1851, 1945
FauI	CCCGC	2 cut(s)	287, 649
FbaI	TGATCA	3 cut(s)	1056, 1581, 1896
FblI	GTMKAC	3 cut(s)	339, 620, 1151
Fnu4HI	GCNGC	4 cut(s)	147, 383, 654, 1801
FokI	GGATG	9 cut(s)	257, 758, 781, 785, 886, 1306, 1539, 2195, 2231
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	147, 383, 654, 1801
FspBI	CTAG	3 cut(s)	549, 1505, 1710
GlaI	GCGC	3 cut(s)	98, 2043, 2248
GluI	GCNGC	4 cut(s)	147, 383, 654, 1801
GsuI	CTGGAG	1 cut(s)	1421
HaeII	RGCGCY	2 cut(s)	100, 2250
HaeIII	GGCC	2 cut(s)	308, 2213
HapII	CCGG	1 cut(s)	504
HgaI	GACGC	3 cut(s)	68, 785, 1520
HhaI	GCGC	3 cut(s)	99, 2044, 2249
Hin1I	GRCGYC	2 cut(s)	60, 321
Hin1II	CATG	4 cut(s)	494, 1069, 1855, 1949
Hin6I	GCGC	3 cut(s)	97, 2042, 2247
HinP1I	GCGC	3 cut(s)	97, 2042, 2247
HincII	GTYRAC	4 cut(s)	331, 340, 475, 1510
HindII	GTYRAC	4 cut(s)	331, 340, 475, 1510
HindIII	AAGCTT	2 cut(s)	1197, 1730
HinfI	GANTC	6 cut(s)	377, 892, 1087, 1845, 1984, 2086
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	1 cut(s)	504
Hpy166II	GTNNAC	6 cut(s)	331, 340, 475, 621, 1152, 1510
Hpy188I	TCNGA	6 cut(s)	58, 785, 891, 1032, 1212, 2109
Hpy188III	TCNNGA	8 cut(s)	247, 549, 863, 896, 926, 1394, 1556, 1900
Hpy8I	GTNNAC	6 cut(s)	331, 340, 475, 621, 1152, 1510
Hpy99I	CGWCG	4 cut(s)	62, 326, 341, 344
HpyCH4III	ACNGT	5 cut(s)	337, 1205, 1679, 1894, 2035
HpyCH4IV	ACGT	5 cut(s)	321, 728, 737, 1148, 1935
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 77, 399, 508, 566, 1287, 2138, 2143
HpyF3I	CTNAG	8 cut(s)	203, 478, 570, 1077, 2064, 2084, 2108, 2133
HpySE526I	ACGT	5 cut(s)	321, 728, 737, 1148, 1935
Hsp92I	GRCGYC	2 cut(s)	60, 321
Hsp92II	CATG	4 cut(s)	494, 1069, 1855, 1949
HspAI	GCGC	3 cut(s)	97, 2042, 2247
Ksp22I	TGATCA	3 cut(s)	1056, 1581, 1896
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	6 cut(s)	794, 1056, 1519, 1581, 1876, 1896
LguI	GCTCTTC	1 cut(s)	1626
LmnI	GCTCC	4 cut(s)	817, 1922, 2112, 2240
Lsp1109I	GCAGC	2 cut(s)	369, 1787
LweI	GCATC	9 cut(s)	523, 736, 999, 1104, 1399, 1444, 1561, 2119, 2173
MaeI	CTAG	3 cut(s)	549, 1505, 1710
MaeII	ACGT	5 cut(s)	321, 728, 737, 1148, 1935
MaeIII	GTNAC	7 cut(s)	724, 934, 1039, 1249, 1459, 1669, 1774
MalI	GATC	6 cut(s)	796, 1058, 1521, 1583, 1878, 1898
MboI	GATC	6 cut(s)	794, 1056, 1519, 1581, 1876, 1896
MboII	GAAGA	9 cut(s)	117, 229, 775, 1199, 1310, 1432, 1516, 1613, 2009
MhlI	GDGCHC	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	2213
MluI	ACGCGT	1 cut(s)	777
MluNI	TGGCCA	1 cut(s)	2213
MlyI	GAGTC	2 cut(s)	371, 2095
MmeI	TCCRAC	1 cut(s)	81
Mox20I	TGGCCA	1 cut(s)	2213
MroXI	GAANNNNTTC	1 cut(s)	1652
MscI	TGGCCA	1 cut(s)	2213
MslI	CAYNNNNRTG	1 cut(s)	1557
Msp20I	TGGCCA	1 cut(s)	2213
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	305, 504
Mva1269I	GAATGC	2 cut(s)	1409, 2305
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	8 cut(s)	68, 77, 399, 508, 566, 1287, 2138, 2143
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	6 cut(s)	794, 1056, 1519, 1581, 1876, 1896
NlaIII	CATG	4 cut(s)	494, 1069, 1855, 1949
NlaIV	GGNNCC	1 cut(s)	819
NmeAIII	GCCGAG	2 cut(s)	340, 383
NmuCI	GTSAC	5 cut(s)	934, 1039, 1249, 1669, 1774
PciSI	GCTCTTC	1 cut(s)	1626
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 521, 734
PctI	GAATGC	2 cut(s)	1409, 2305
PdmI	GAANNNNTTC	1 cut(s)	1652
PfeI	GAWTC	4 cut(s)	892, 1087, 1845, 1984
PflFI	GACNNNGTC	1 cut(s)	1131
PflMI	CCANNNNNTGG	1 cut(s)	2237
PkrI	GCNGC	4 cut(s)	148, 384, 655, 1802
PleI	GAGTC	2 cut(s)	371, 2094
PpsI	GAGTC	2 cut(s)	371, 2094
Ppu21I	YACGTR	1 cut(s)	729
PshBI	ATTAAT	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	819
PspPI	GGNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	1131
RsaI	GTAC	4 cut(s)	680, 1317, 1366, 1991
RsaNI	GTAC	4 cut(s)	679, 1316, 1365, 1990
RseI	CAYNNNNRTG	1 cut(s)	1557
SalI	GTCGAC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	1626
SatI	GCNGC	4 cut(s)	147, 383, 654, 1801
Sau3AI	GATC	6 cut(s)	794, 1056, 1519, 1581, 1876, 1896
Sau96I	GGNCC	1 cut(s)	307
ScaI	AGTACT	1 cut(s)	1366
SchI	GAGTC	2 cut(s)	371, 2095
ScrFI	CCNGG	2 cut(s)	305, 504
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	9 cut(s)	523, 736, 999, 1104, 1399, 1444, 1561, 2119, 2173
SfcI	CTRYAG	2 cut(s)	383, 1675
SgrDI	CGTCGACG	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	1557
SmlI	CTYRAG	4 cut(s)	92, 164, 896, 1739
SmoI	CTYRAG	4 cut(s)	92, 164, 896, 1739
SnaBI	TACGTA	1 cut(s)	729
SpeI	ACTAGT	1 cut(s)	1504
SsiI	CCGC	9 cut(s)	43, 147, 232, 280, 300, 407, 653, 656, 1012
SspI	AATATT	1 cut(s)	2269
SspMI	CTAG	3 cut(s)	549, 1505, 1710
StyD4I	CCNGG	2 cut(s)	303, 502
StyI	CCWWGG	2 cut(s)	2200, 2214
TaaI	ACNGT	5 cut(s)	337, 1205, 1679, 1894, 2035
TaiI	ACGT	5 cut(s)	324, 731, 740, 1151, 1938
TaqI	TCGA	6 cut(s)	177, 339, 414, 797, 862, 1090
TatI	WGTACW	4 cut(s)	678, 1315, 1364, 1989
TauI	GCSGC	2 cut(s)	149, 656
TfiI	GAWTC	4 cut(s)	892, 1087, 1845, 1984
TscAI	CASTG	6 cut(s)	371, 655, 1381, 1684, 1899, 2068
TseFI	GTSAC	5 cut(s)	934, 1039, 1249, 1669, 1774
TseI	GCWGC	2 cut(s)	382, 1800
Tsp45I	GTSAC	5 cut(s)	934, 1039, 1249, 1669, 1774
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	6 cut(s)	371, 655, 1381, 1684, 1899, 2068
Tth111I	GACNNNGTC	1 cut(s)	1131
Van91I	CCANNNNNTGG	1 cut(s)	2237
VspI	ATTAAT	1 cut(s)	849
XagI	CCTNNNNNAGG	2 cut(s)	314, 1838
XapI	RAATTY	6 cut(s)	21, 445, 661, 1081, 1562, 1814
XbaI	TCTAGA	1 cut(s)	548
XmiI	GTMKAC	3 cut(s)	339, 620, 1151
XmnI	GAANNNNTTC	1 cut(s)	1652
XspI	CTAG	3 cut(s)	549, 1505, 1710
ZraI	GACGTC	1 cut(s)	322
ZrmI	AGTACT	1 cut(s)	1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.