Rh7DG423700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0007568
Physical Location & Seq
Forward (+)
59856575 .. 59857309
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG423700.1

Sequence Viewer

Length: 735 bp
ATGGAAGAGGCAATGGGAATTGTACAAGATATGGTAGGGAAAGGGTTATCCCCTGATGTAGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAACTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATCACCCGATGCAGTTACCTATTCATCGCTAATTCAAGAAGGGAGATTAGTTGACGCTTGTGATCTCTTCCAAGAAATGATAAGTATGGGGTTGCGTCCTGATGAATTCACATACACAACCTTGATCAATGCTTACTGCAAGGAAGGGGATTTGAATAAGGCTCTTCACTTGAATGATGAAATGATAAAGAAAGGTTTCCTACCTGATGTTGTGACCTACAGTGTGCTTATCAATGGACTTAACAAACAATCTCGGACAAGAGAAGCAAAGAAGCTTCTACTCAAGTTGTTCTATGATAACTCTGTCCCAGATGATGTCACATACAATACTCTAATAGAGAGCTGCACGAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATCAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGAAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATAATTGCGCTGATTAA

Protein Analysis

244

Amino Acids

27.46

Weight (kDa)

5.47

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 1 - 32 2.1e-07 PPR repeat family
PPR_3 PF13812 7 - 63 9.8e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 14 - 47 1.1e-10 PPR repeat
PPR_2 PF13041 18 - 63 5.8e-16 PPR repeat family
PPR_1 PF12854 49 - 77 9.4e-06 PPR repeat
PPR_2 PF13041 62 - 98 2.1e-11 PPR repeat family
TPR_24 PF23276 72 - 168 3.6e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 73 - 129 5.8e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 80 - 112 4.5e-13 PPR repeat
PPR PF01535 87 - 117 2.4e-08 PPR repeat
PPR_2 PF13041 88 - 132 1e-17 PPR repeat family
PPR_1 PF12854 115 - 144 1.3e-06 PPR repeat
PPR_1 PF12854 202 - 232 6e-07 PPR repeat
PPR_2 PF13041 208 - 239 1.1e-06 PPR repeat family
PPR PF01535 208 - 237 2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 257, 509
AfaI GTAC 3 cut(s) 24, 73, 686
AfiI CCNNNNNNNGG 1 cut(s) 535
AgsI TTSAA 6 cut(s) 188, 307, 325, 509, 584, 679
AluBI AGCT 2 cut(s) 427, 495
AluI AGCT 2 cut(s) 427, 495
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 2 cut(s) 257, 509
Asp700I GAANNNNTTC 1 cut(s) 347
AspLEI GCGC 1 cut(s) 728
AsuHPI GGTGA 1 cut(s) 147
BbvI GCAGC 1 cut(s) 482
BccI CCATC 2 cut(s) 124, 130
BclI TGATCA 2 cut(s) 276, 591
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
BmcAI AGTACT 1 cut(s) 73
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 2 cut(s) 106, 151
BmuI ACTGGG 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 419
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse1I ACTGG 2 cut(s) 88, 111
Bse3DI GCAATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 535
BseMI GCAATG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 88, 111
BseXI GCAGC 1 cut(s) 482
BsgI GTGCAG 1 cut(s) 481
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 116
Bsp1407I TGTACA 2 cut(s) 22, 684
Bsp143I GATC 4 cut(s) 214, 276, 571, 591
BspQI GCTCTTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 18
BsrGI TGTACA 2 cut(s) 22, 684
BsrI ACTGG 2 cut(s) 88, 111
BssMI GATC 4 cut(s) 214, 276, 571, 591
Bst4CI ACNGT 2 cut(s) 374, 589
Bst6I CTCTTC 2 cut(s) 224, 321
BstAUI TGTACA 2 cut(s) 22, 684
BstENI CCTNNNNNAGG 1 cut(s) 533
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 4 cut(s) 217, 279, 574, 594
BstMBI GATC 4 cut(s) 214, 276, 571, 591
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 482
BtgZI GCGATG 1 cut(s) 162
BtsIMutI CAGTG 3 cut(s) 81, 379, 594
CfoI GCGC 1 cut(s) 728
CseI GACGC 2 cut(s) 215, 236
Csp6I GTAC 3 cut(s) 23, 72, 685
CviAII CATG 2 cut(s) 547, 641
CviJI RGCY 4 cut(s) 314, 427, 495, 527
CviKI_1 RGCY 4 cut(s) 314, 427, 495, 527
CviQI GTAC 3 cut(s) 23, 72, 685
DpnI GATC 4 cut(s) 216, 278, 573, 593
DpnII GATC 4 cut(s) 214, 276, 571, 591
Eam1104I CTCTTC 2 cut(s) 224, 321
EarI CTCTTC 2 cut(s) 224, 321
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 257
FaeI CATG 2 cut(s) 550, 644
FaqI GGGAC 1 cut(s) 443
FatI CATG 2 cut(s) 546, 640
FbaI TGATCA 2 cut(s) 276, 591
Fnu4HI GCNGC 1 cut(s) 496
Fsp4HI GCNGC 1 cut(s) 496
GlaI GCGC 1 cut(s) 727
GluI GCNGC 1 cut(s) 496
GsuI CTGGAG 1 cut(s) 128
HgaI GACGC 2 cut(s) 215, 236
HhaI GCGC 1 cut(s) 728
Hin1II CATG 2 cut(s) 550, 644
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 2 cut(s) 540, 679
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 408, 669
Hpy188III TCNNGA 4 cut(s) 101, 188, 251, 595
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 6 cut(s) 139, 185, 290, 544, 650, 664
HpyCH4III ACNGT 2 cut(s) 374, 589
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 5 cut(s) 116, 164, 291, 498, 546
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 2 cut(s) 550, 644
HspAI GCGC 1 cut(s) 726
Ksp22I TGATCA 2 cut(s) 276, 591
Kzo9I GATC 4 cut(s) 214, 276, 571, 591
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 617
LpnPI CCDG 7 cut(s) 66, 69, 92, 264, 369, 474, 690
Lsp1109I GCAGC 1 cut(s) 482
LweI GCATC 2 cut(s) 106, 151
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 3 cut(s) 166, 364, 469
MalI GATC 4 cut(s) 216, 278, 573, 593
MboI GATC 4 cut(s) 214, 276, 571, 591
MboII GAAGA 5 cut(s) 17, 139, 211, 308, 704
MluCI AATT 5 cut(s) 18, 183, 257, 509, 721
MnlI CCTC 2 cut(s) 591, 726
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 3 cut(s) 393, 513, 733
MslI CAYNNNNRTG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 116
NdeII GATC 4 cut(s) 214, 276, 571, 591
NlaIII CATG 2 cut(s) 550, 644
NmuCI GTSAC 2 cut(s) 364, 469
PciSI GCTCTTC 1 cut(s) 321
PctI GAATGC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 540, 679
PkrI GCNGC 1 cut(s) 497
RsaI GTAC 3 cut(s) 24, 73, 686
RsaNI GTAC 3 cut(s) 23, 72, 685
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 3 cut(s) 393, 513, 733
SatI GCNGC 1 cut(s) 496
Sau3AI GATC 4 cut(s) 214, 276, 571, 591
ScaI AGTACT 1 cut(s) 73
SetI ASST 9 cut(s) 173, 275, 349, 358, 371, 429, 497, 613, 633
SfaNI GCATC 2 cut(s) 106, 151
SfcI CTRYAG 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 5 cut(s) 18, 183, 257, 509, 721
TaaI ACNGT 2 cut(s) 374, 589
TaiI ACGT 1 cut(s) 633
TasI AATT 5 cut(s) 18, 183, 257, 509, 721
TatI WGTACW 3 cut(s) 22, 71, 684
TfiI GAWTC 2 cut(s) 540, 679
Tru1I TTAA 3 cut(s) 393, 513, 733
Tru9I TTAA 3 cut(s) 393, 513, 733
TscAI CASTG 3 cut(s) 88, 379, 594
TseFI GTSAC 2 cut(s) 364, 469
TseI GCWGC 1 cut(s) 495
Tsp45I GTSAC 2 cut(s) 364, 469
TspDTI ATGAA 6 cut(s) 140, 165, 270, 345, 563, 575
TspRI CASTG 3 cut(s) 88, 379, 594
XagI CCTNNNNNAGG 1 cut(s) 533
XapI RAATTY 2 cut(s) 257, 509
XmnI GAANNNNTTC 1 cut(s) 347
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.