Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026245.1

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3843

Gene Structure 3843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026245.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

atgcgtgttagaggacttcgtccaaatgagagggcgtatactacattgatagatggattcgcccaacaagggttcttaaatgaagcttacggtcttctgaatgaaatggttgggcgtggattttctccttcagttgtgacttacaatgcccttatcaatggatactgcttattaggcaggatggaagaggcaatgggaattgtacaagatatggtagggaaagggttatcccctgatgtagtaagttatagtactattatcactgggttttgtcggcatcaagaactggagagtgcattccaaatgaagatggagatggtggagaagggtatatcacccgatgcagttacctattcatctctaattcaagaagggagattagttgacgcttgtgatctcttccaagaaatgataagtatggggttgcgtcctgatgaattcacatacacaaccttgatcaatgcttactgcaaggaaggggatttgaataaggctcttcagttgaatgatgaaatgataaagaaaggtttcctacctgatgttgtgacctacagtgtgcttatcaatggacttaacaaacaagctcggacaagagaagcaaagaagcttctactcaagttgttctatgataactctgtcccagatgatgtcacatacaatactctaatagagagctgcacgaatgttgaatttaagagtgtggtagcccttgtaaagggattctgcatgaagggtttgatgaaagaagcagatcaagtttttgaaacagtgataaagaggaaatacaaacctaatggagcagtttatgacgttatcatacatggtcattgtagggaaggaaatgttcaggaggcattgaatctgtacaaggaaatgttgctttctggttttcttcctcatactgtgactgttattgcactgattaaagaacttttcactgagggaatgaacaatgaactgagtcaagtcatagagaacactctgaggagctgtgagcttactgatgctgagcttgcaaagctgcttgttgaaacaaatcataaagaaggaaatttggatgcagtttttaatgtccttggtgaaatggccaaggatggtctccttccaaatagtggagcaagcgcttgtgcaggggggtggtatgccgaagtgcataattatctgagttttggttgttggcatacaaattgctttactgaagttatggtggcttgctgcaatgaaccttgttcctccattgccatgttcattggccaatttatttgtgaagattcatcatttaccactgcactttccttcacttgctggaaaggtcctgatgaatctattaacattgctaaagctcatggatttatgcctggtgtgctttcgtataatgcgattttagatgcagtgattaggtctaaagggtctgttcgttctctttatattaaactaactttcttcttcctttattatcagaactttttgtatattgctaaggatgagagttcgccattgaaagccattgactttggcctatcagattttgccaaaccagatgagaggcttaatgatattgtcggaagtgcatactacgtggctcctgaggttctacatagatcttatagtacagaggctgatgtatggagtataggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

546

Amino Acids

60.82

Weight (kDa)

5.03

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1112
AccI	GTMKAC	1 cut(s)	38
AcoI	YGGCCR	2 cut(s)	1086, 1252
AcsI	RAATTY	3 cut(s)	437, 689, 1051
AcuI	CTGAAG	3 cut(s)	114, 482, 1218
AfaI	GTAC	4 cut(s)	204, 253, 866, 1612
AfeI	AGCGCT	1 cut(s)	1123
AfiI	CCNNNNNNNGG	3 cut(s)	69, 715, 1112
AgsI	TTSAA	8 cut(s)	368, 487, 505, 689, 764, 859, 1031, 1501
AjnI	CCWGG	1 cut(s)	1357
AluBI	AGCT	9 cut(s)	86, 584, 607, 675, 990, 997, 1012, 1021, 1343
AluI	AGCT	9 cut(s)	86, 584, 607, 675, 990, 997, 1012, 1021, 1343
Alw26I	GTCTC	1 cut(s)	1103
AlwNI	CAGNNNCTG	1 cut(s)	1619
Aor51HI	AGCGCT	1 cut(s)	1123
AoxI	GGCC	3 cut(s)	1086, 1252, 1516
ApeKI	GCWGC	3 cut(s)	675, 1021, 1215
ApoI	RAATTY	3 cut(s)	437, 689, 1051
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	1124
AspS9I	GGNCC	1 cut(s)	1313
AsuHPI	GGTGA	2 cut(s)	327, 1091
AvaII	GGWCC	1 cut(s)	1313
AxyI	CCTNAGG	1 cut(s)	1587
BalI	TGGCCA	2 cut(s)	1088, 1254
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	662, 1008, 1202
BccI	CCATC	5 cut(s)	47, 175, 304, 310, 1088
BciT130I	CCWGG	1 cut(s)	1359
BciVI	GTATCC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	1103
BfmI	CTRYAG	1 cut(s)	550
BfoI	RGCGCY	1 cut(s)	1125
BfuI	GTATCC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	1601
BisI	GCNGC	3 cut(s)	676, 1022, 1216
BlpI	GCTNAGC	1 cut(s)	1008
BlsI	GCNGC	3 cut(s)	677, 1023, 1217
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	1359
Bme18I	GGWCC	1 cut(s)	1313
BmgT120I	GGNCC	1 cut(s)	1313
BmiI	GGNNCC	1 cut(s)	1584
BmrFI	CCNGG	1 cut(s)	1359
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	5 cut(s)	286, 331, 994, 1048, 1378
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	1479
Bpu1102I	GCTNAGC	1 cut(s)	1008
BpuEI	CTTGAG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	1579
BsaI	GGTCTC	1 cut(s)	1103
BsaJI	CCNNGG	2 cut(s)	1075, 1089
BsaXI	ACNNNNNCTCC	1 cut(s)	1621
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 715, 1112
Bse1I	ACTGG	2 cut(s)	268, 291
Bse21I	CCTNAGG	1 cut(s)	1587
Bse3DI	GCAATG	4 cut(s)	198, 1225, 1236, 1332
BseBI	CCWGG	1 cut(s)	1359
BseDI	CCNNGG	2 cut(s)	1075, 1089
BseGI	GGATG	4 cut(s)	186, 1063, 1099, 1489
BseLI	CCNNNNNNNGG	3 cut(s)	69, 715, 1112
BseMI	GCAATG	4 cut(s)	198, 1225, 1236, 1332
BseMII	CTCAG	6 cut(s)	930, 950, 974, 999, 1154, 1578
BseNI	ACTGG	2 cut(s)	268, 291
BseRI	GAGGAG	1 cut(s)	1000
BseXI	GCAGC	3 cut(s)	662, 1008, 1202
BsgI	GTGCAG	3 cut(s)	661, 1149, 1272
BshFI	GGCC	3 cut(s)	1088, 1254, 1518
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	3 cut(s)	69, 715, 1112
BsmAI	GTCTC	1 cut(s)	1103
BsmFI	GGGAC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	1088, 1254, 1518
Bso31I	GGTCTC	1 cut(s)	1103
Bsp1407I	TGTACA	2 cut(s)	202, 864
Bsp143I	GATC	4 cut(s)	394, 456, 751, 1601
Bsp1720I	GCTNAGC	1 cut(s)	1008
BspANI	GGCC	3 cut(s)	1088, 1254, 1518
BspCNI	CTCAG	6 cut(s)	931, 951, 975, 1000, 1155, 1579
BspLI	GGNNCC	1 cut(s)	1584
BspQI	GCTCTTC	1 cut(s)	501
BspTNI	GGTCTC	1 cut(s)	1103
BsrDI	GCAATG	4 cut(s)	198, 1225, 1236, 1332
BsrGI	TGTACA	2 cut(s)	202, 864
BsrI	ACTGG	2 cut(s)	268, 291
BssECI	CCNNGG	2 cut(s)	1075, 1089
BssMI	GATC	4 cut(s)	394, 456, 751, 1601
BssNAI	GTATAC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	1075, 1089
Bst1107I	GTATAC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	1359
Bst4CI	ACNGT	5 cut(s)	92, 554, 769, 904, 910
Bst6I	CTCTTC	3 cut(s)	180, 404, 501
BstAUI	TGTACA	2 cut(s)	202, 864
BstBAI	YACGTR	1 cut(s)	1579
BstC8I	GCNNGC	3 cut(s)	1014, 1120, 1213
BstDEI	CTNAG	7 cut(s)	939, 959, 983, 1008, 1163, 1479, 1587
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	4 cut(s)	186, 1063, 1099, 1489
BstH2I	RGCGCY	1 cut(s)	1125
BstHHI	GCGC	1 cut(s)	1124
BstKTI	GATC	4 cut(s)	397, 459, 754, 1604
BstMAI	GTCTC	1 cut(s)	1103
BstMBI	GATC	4 cut(s)	394, 456, 751, 1601
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 1013, 1018, 1363
BstNI	CCWGG	1 cut(s)	1359
BstSCI	CCNGG	1 cut(s)	1357
BstSFI	CTRYAG	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	662, 1008, 1202
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	1601
BstYI	RGATCY	1 cut(s)	1601
BstZ17I	GTATAC	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	1587
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	1088, 1254, 1518
BtsCI	GGATG	4 cut(s)	186, 1063, 1099, 1489
BtsI	GCAGTG	2 cut(s)	1284, 1398
BtsIMutI	CAGTG	7 cut(s)	261, 559, 774, 917, 936, 1284, 1398
Cac8I	GCNNGC	3 cut(s)	1014, 1120, 1213
CaiI	CAGNNNCTG	1 cut(s)	1619
CfoI	GCGC	1 cut(s)	1124
Cfr13I	GGNCC	1 cut(s)	1313
CseI	GACGC	2 cut(s)	395, 416
Csp6I	GTAC	4 cut(s)	203, 252, 865, 1611
CviAII	CATG	4 cut(s)	727, 821, 1243, 1346
CviQI	GTAC	4 cut(s)	203, 252, 865, 1611
DdeI	CTNAG	7 cut(s)	939, 959, 983, 1008, 1163, 1479, 1587
DpnI	GATC	4 cut(s)	396, 458, 753, 1603
DpnII	GATC	4 cut(s)	394, 456, 751, 1601
EaeI	YGGCCR	2 cut(s)	1086, 1252
Eam1104I	CTCTTC	3 cut(s)	180, 404, 501
EarI	CTCTTC	3 cut(s)	180, 404, 501
Eco130I	CCWWGG	2 cut(s)	1075, 1089
Eco31I	GGTCTC	1 cut(s)	1103
Eco47I	GGWCC	1 cut(s)	1313
Eco47III	AGCGCT	1 cut(s)	1123
Eco57I	CTGAAG	3 cut(s)	114, 482, 1218
Eco81I	CCTNAGG	1 cut(s)	1587
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	1313
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	1357
EcoT14I	CCWWGG	2 cut(s)	1075, 1089
ErhI	CCWWGG	2 cut(s)	1075, 1089
FaeI	CATG	4 cut(s)	730, 824, 1246, 1349
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	4 cut(s)	726, 820, 1242, 1345
FbaI	TGATCA	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	3 cut(s)	676, 1022, 1216
FokI	GGATG	4 cut(s)	193, 1070, 1106, 1496
Fsp4HI	GCNGC	3 cut(s)	676, 1022, 1216
GlaI	GCGC	1 cut(s)	1123
GluI	GCNGC	3 cut(s)	676, 1022, 1216
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	1125
HaeIII	GGCC	3 cut(s)	1088, 1254, 1518
HgaI	GACGC	2 cut(s)	395, 416
HhaI	GCGC	1 cut(s)	1124
Hin1II	CATG	4 cut(s)	730, 824, 1246, 1349
Hin6I	GCGC	1 cut(s)	1122
HinP1I	GCGC	1 cut(s)	1122
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	84, 605
HinfI	GANTC	6 cut(s)	57, 720, 859, 961, 1271, 1322
HphI	GGTGA	2 cut(s)	327, 1091
Hpy166II	GTNNAC	2 cut(s)	39, 385
Hpy188I	TCNGA	7 cut(s)	99, 588, 984, 1164, 1461, 1525, 1565
Hpy188III	TCNNGA	6 cut(s)	281, 368, 431, 848, 1316, 1586
Hpy8I	GTNNAC	2 cut(s)	39, 385
HpyAV	CCTTC	9 cut(s)	138, 319, 365, 470, 724, 830, 1040, 1112, 1306
HpyCH4III	ACNGT	5 cut(s)	92, 554, 769, 904, 910
HpyCH4IV	ACGT	2 cut(s)	810, 1578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 1013, 1018, 1363
HpyF3I	CTNAG	7 cut(s)	939, 959, 983, 1008, 1163, 1479, 1587
HpySE526I	ACGT	2 cut(s)	810, 1578
Hsp92II	CATG	4 cut(s)	730, 824, 1246, 1349
HspAI	GCGC	1 cut(s)	1122
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	394, 456, 751, 1601
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	4 cut(s)	797, 987, 1115, 1588
Lsp1109I	GCAGC	3 cut(s)	662, 1008, 1202
LweI	GCATC	5 cut(s)	286, 331, 994, 1048, 1378
MaeII	ACGT	2 cut(s)	810, 1578
MaeIII	GTNAC	5 cut(s)	136, 346, 544, 649, 904
MalI	GATC	4 cut(s)	396, 458, 753, 1603
MboI	GATC	4 cut(s)	394, 456, 751, 1601
MboII	GAAGA	9 cut(s)	86, 197, 319, 391, 488, 884, 1280, 1435, 1438
MflI	RGATCY	1 cut(s)	1601
MlsI	TGGCCA	2 cut(s)	1088, 1254
MluCI	AATT	8 cut(s)	198, 363, 437, 689, 1051, 1156, 1186, 1256
MluNI	TGGCCA	2 cut(s)	1088, 1254
MlyI	GAGTC	1 cut(s)	970
MmeI	TCCRAC	1 cut(s)	1543
Mox20I	TGGCCA	2 cut(s)	1088, 1254
MroXI	GAANNNNTTC	1 cut(s)	527
MscI	TGGCCA	2 cut(s)	1088, 1254
MseI	TTAA	8 cut(s)	77, 573, 693, 924, 1068, 1329, 1431, 1551
MslI	CAYNNNNRTG	1 cut(s)	1241
Msp20I	TGGCCA	2 cut(s)	1088, 1254
MspR9I	CCNGG	1 cut(s)	1359
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	1359
MwoI	GCNNNNNNNGC	4 cut(s)	174, 1013, 1018, 1363
NdeII	GATC	4 cut(s)	394, 456, 751, 1601
NlaIII	CATG	4 cut(s)	730, 824, 1246, 1349
NlaIV	GGNNCC	1 cut(s)	1584
NmuCI	GTSAC	4 cut(s)	136, 544, 649, 904
PciSI	GCTCTTC	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	1376
PctI	GAATGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	5 cut(s)	57, 720, 859, 1271, 1322
PflFI	GACNNNGTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	1112
PkrI	GCNGC	3 cut(s)	677, 1023, 1217
PleI	GAGTC	1 cut(s)	969
PpsI	GAGTC	1 cut(s)	969
Ppu21I	YACGTR	1 cut(s)	1579
PpuMI	RGGWCCY	1 cut(s)	1313
Psp5II	RGGWCCY	1 cut(s)	1313
Psp6I	CCWGG	1 cut(s)	1357
PspGI	CCWGG	1 cut(s)	1357
PspN4I	GGNNCC	1 cut(s)	1584
PspPI	GGNCC	1 cut(s)	1313
PspPPI	RGGWCCY	1 cut(s)	1313
PstNI	CAGNNNCTG	1 cut(s)	1619
PsuI	RGATCY	1 cut(s)	1601
PsyI	GACNNNGTC	1 cut(s)	18
RsaI	GTAC	4 cut(s)	204, 253, 866, 1612
RsaNI	GTAC	4 cut(s)	203, 252, 865, 1611
RseI	CAYNNNNRTG	1 cut(s)	1241
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	8 cut(s)	77, 573, 693, 924, 1068, 1329, 1431, 1551
SatI	GCNGC	3 cut(s)	676, 1022, 1216
Sau3AI	GATC	4 cut(s)	394, 456, 751, 1601
Sau96I	GGNCC	1 cut(s)	1313
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	1 cut(s)	970
ScrFI	CCNGG	1 cut(s)	1359
SfaNI	GCATC	5 cut(s)	286, 331, 994, 1048, 1378
SfcI	CTRYAG	1 cut(s)	550
SinI	GGWCC	1 cut(s)	1313
SmiMI	CAYNNNNRTG	1 cut(s)	1241
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	8 cut(s)	198, 363, 437, 689, 1051, 1156, 1186, 1256
StyD4I	CCNGG	1 cut(s)	1357
StyI	CCWWGG	2 cut(s)	1075, 1089
TaaI	ACNGT	5 cut(s)	92, 554, 769, 904, 910
TaiI	ACGT	2 cut(s)	813, 1581
TasI	AATT	8 cut(s)	198, 363, 437, 689, 1051, 1156, 1186, 1256
TatI	WGTACW	4 cut(s)	202, 251, 864, 1610
TfiI	GAWTC	5 cut(s)	57, 720, 859, 1271, 1322
Tru1I	TTAA	8 cut(s)	77, 573, 693, 924, 1068, 1329, 1431, 1551
Tru9I	TTAA	8 cut(s)	77, 573, 693, 924, 1068, 1329, 1431, 1551
TscAI	CASTG	7 cut(s)	268, 559, 774, 924, 943, 1291, 1398
TseFI	GTSAC	4 cut(s)	136, 544, 649, 904
TseI	GCWGC	3 cut(s)	675, 1021, 1215
Tsp45I	GTSAC	4 cut(s)	136, 544, 649, 904
TspRI	CASTG	7 cut(s)	268, 559, 774, 924, 943, 1291, 1398
Tth111I	GACNNNGTC	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	1112
VpaK11BI	GGWCC	1 cut(s)	1313
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	3 cut(s)	437, 689, 1051
XmiI	GTMKAC	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	527
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.