Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Forward (+)

78121856 .. 78123326

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0584200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTCTCCTCCGCCGCTGTTTGCTTGGAATTCAATCATCAGGGCCTTTGCAAAGAGCCCAGCTCCGATTGAATCGGTCAACTTTTTCTTTGAGCTGCGTAGAATTGGGCTTAAACCCGACTACTTTACTTACCCTTTTGTTGTGAAAGCCTGTGGTCGATGTAGGATGGTTGGAGTTGGTGGGTTGGTGCAGTGTTTGATTATAAAAGATGGTTTTGATTATGATCAGTATATAGGGAATGCCCTTTTCAGAATGTATGCTGATTGCGGCGCGGTTGGGATTGCGAGGAAGGTGTTTGATGAAATGCCTGTGAGAGATGTGGTTTCTTGGAGCTCTTTGATCGCCGGATATGTTGCTTGCGACTACCCATTGGAAGCCTTAAGGGTGTTTCGAGAGATGAAGCTAGCCAATGAAAAACCAAATTCAGTCACTTTGGTAAGCTTGCTTTCTGCCTGTACCTGTGTACACAATATTAGCACAGGGAAGTCAATTCATTGCTACATTATCGTCCATCCCATAGAGATAGATGTTGCTCTGGGAACTGCTCTGATTGAGATGTATTCCAAGTGTGGGCATGTTGAGAAAGCCTTCCATATCTTCAATTCAATGAGTGAAAAGAATTTGCAGTCTTGGACTATTATGATTTGTGGTCTTGCCGATCATGGTCGTGGAAACGATGCCATCTTGTTGTTTGCTCGCATGGAACAAGCTGGATTGGTACCAGACAGCATGGCATTTTCTGCTATCTTGTCAGCCTGTAGCCACTTGGGCCTCCTTAATGAGGGTCGACAATTTTTCAATCAGATGGTGAGAACATATAATATTGAACCAACAATGGAACATTATGGATGCTTAGTAGATTTGCTTGGAAGAGCTGGTCTGATTGAAGAGGCTTATGAGGTTATCAAAAATATGCCAATGGAGCCTAATTCAGTTATACTGCGGAGTTTCTTGGGTGCCTGTAGGAACCACAATGTAGTTTTTCCTTTAGATGATAAGTTCAGGAAAGTCCTTAAATCGGAGTCTCACCTTGGAGCAAACTATGTACTTGCAGCTAATGTATCTTCTGTCTCTGGTTGTTGGAGTGATGCTGCTGATCTGCGACTATCCATGAAACAGAAGGGTGTGGTAAAGGTTCCTGGGTGCAGTTGGGTGGAGGTGGGTGGTAGTTCATCTGGAGATATTTTAAAAGAGACTGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

401

Amino Acids

44.24

Weight (kDa)

6.78

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	105 - 152	9.4e-10	PPR repeat family
PPR_2	PF13041	207 - 254	6.1e-08	PPR repeat family
E_motif	PF20431	341 - 386	5.9e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	718
AccB1I	GGYRCC	2 cut(s)	718, 956
AccI	GTMKAC	1 cut(s)	787
AccII	CGCG	1 cut(s)	272
AciI	CCGC	5 cut(s)	11, 14, 267, 272, 943
AcsI	RAATTY	3 cut(s)	28, 421, 619
AfaI	GTAC	4 cut(s)	457, 465, 720, 1047
AfiI	CCNNNNNNNGG	3 cut(s)	570, 781, 1018
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	7 cut(s)	33, 71, 601, 606, 799, 827, 887
AjnI	CCWGG	1 cut(s)	1138
AluBI	AGCT	8 cut(s)	62, 94, 333, 403, 441, 710, 875, 1055
AluI	AGCT	8 cut(s)	62, 94, 333, 403, 441, 710, 875, 1055
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	4 cut(s)	9, 1029, 1075, 1187
AoxI	GGCC	2 cut(s)	42, 769
ApeKI	GCWGC	3 cut(s)	94, 1052, 1091
ApoI	RAATTY	3 cut(s)	28, 421, 619
Asp700I	GAANNNNTTC	1 cut(s)	587
Asp718I	GGTACC	1 cut(s)	718
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	42, 769
AsuHPI	GGTGA	2 cut(s)	820, 1019
AsuNHI	GCTAGC	1 cut(s)	403
BanI	GGYRCC	2 cut(s)	718, 956
BanII	GRGCYC	2 cut(s)	59, 335
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	3 cut(s)	81, 1064, 1078
BccI	CCATC	5 cut(s)	160, 203, 519, 689, 799
BciT130I	CCWGG	1 cut(s)	1140
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	4 cut(s)	9, 1029, 1075, 1187
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	2 cut(s)	757, 961
BfrI	CTTAAG	1 cut(s)	379
BglI	GCCNNNNNGGC	1 cut(s)	768
BisI	GCNGC	5 cut(s)	14, 95, 268, 1053, 1092
BlsI	GCNGC	5 cut(s)	15, 96, 269, 1054, 1093
Bme1390I	CCNGG	1 cut(s)	1140
BmgT120I	GGNCC	2 cut(s)	42, 769
BmiI	GGNNCC	5 cut(s)	720, 924, 958, 968, 1137
BmrFI	CCNGG	1 cut(s)	1140
BmsI	GCATC	3 cut(s)	667, 839, 1078
BmtI	GCTAGC	1 cut(s)	407
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	1197
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	1030, 1139
Bsc4I	CCNNNNNNNGG	3 cut(s)	570, 781, 1018
Bse3DI	GCAATG	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	1140
BseDI	CCNNGG	2 cut(s)	1030, 1139
BseGI	GGATG	3 cut(s)	171, 511, 854
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	570, 781, 1018
BseMI	GCAATG	1 cut(s)	493
BseXI	GCAGC	3 cut(s)	81, 1064, 1078
BseYI	CCCAGC	1 cut(s)	58
BsgI	GTGCAG	2 cut(s)	209, 1165
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	44, 771
BshNI	GGYRCC	2 cut(s)	718, 956
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	3 cut(s)	570, 781, 1018
BsmAI	GTCTC	4 cut(s)	9, 1029, 1075, 1187
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	44, 771
Bsp1286I	GDGCHC	2 cut(s)	59, 335
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	4 cut(s)	223, 339, 658, 1096
BspACI	CCGC	5 cut(s)	11, 14, 267, 272, 943
BspANI	GGCC	2 cut(s)	44, 771
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	5 cut(s)	720, 924, 958, 968, 1137
BspOI	GCTAGC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	865
BspT107I	GGYRCC	2 cut(s)	718, 956
BspTI	CTTAAG	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	1030, 1139
BssMI	GATC	4 cut(s)	223, 339, 658, 1096
BssT1I	CCWWGG	1 cut(s)	1030
Bst2UI	CCWGG	1 cut(s)	1140
Bst4CI	ACNGT	1 cut(s)	1198
Bst6I	CTCTTC	2 cut(s)	865, 882
BstAFI	CTTAAG	1 cut(s)	379
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	463
BstC8I	GCNNGC	4 cut(s)	358, 405, 443, 697
BstDEI	CTNAG	1 cut(s)	853
BstENI	CCTNNNNNAGG	1 cut(s)	779
BstF5I	GGATG	3 cut(s)	171, 511, 854
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	4 cut(s)	226, 342, 661, 1099
BstMAI	GTCTC	4 cut(s)	9, 1029, 1075, 1187
BstMBI	GATC	4 cut(s)	223, 339, 658, 1096
BstMWI	GCNNNNNNNGC	3 cut(s)	740, 768, 922
BstNI	CCWGG	1 cut(s)	1140
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	1138
BstSFI	CTRYAG	2 cut(s)	757, 961
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	3 cut(s)	81, 1064, 1078
BsuRI	GGCC	2 cut(s)	44, 771
BtsCI	GGATG	3 cut(s)	171, 511, 854
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	4 cut(s)	358, 405, 443, 697
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	42, 769
Csp6I	GTAC	4 cut(s)	456, 464, 719, 1046
CviAII	CATG	5 cut(s)	575, 662, 700, 730, 1111
CviQI	GTAC	4 cut(s)	456, 464, 719, 1046
DdeI	CTNAG	1 cut(s)	853
DpnI	GATC	4 cut(s)	225, 341, 660, 1098
DpnII	GATC	4 cut(s)	223, 339, 658, 1096
DraI	TTTAAA	1 cut(s)	1188
Eam1104I	CTCTTC	2 cut(s)	865, 882
EarI	CTCTTC	2 cut(s)	865, 882
Ecl136II	GAGCTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	1030
Eco24I	GRGCYC	2 cut(s)	59, 335
Eco53kI	GAGCTC	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	333
EcoNI	CCTNNNNNAGG	1 cut(s)	779
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	1138
EcoT14I	CCWWGG	1 cut(s)	1030
EcoT38I	GRGCYC	2 cut(s)	59, 335
ErhI	CCWWGG	1 cut(s)	1030
FaeI	CATG	5 cut(s)	578, 665, 703, 733, 1114
FatI	CATG	5 cut(s)	574, 661, 699, 729, 1110
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	5 cut(s)	14, 95, 268, 1053, 1092
FokI	GGATG	3 cut(s)	178, 498, 861
FriOI	GRGCYC	2 cut(s)	59, 335
Fsp4HI	GCNGC	5 cut(s)	14, 95, 268, 1053, 1092
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	5 cut(s)	14, 95, 268, 1053, 1092
GsaI	CCCAGC	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	1197
HaeIII	GGCC	2 cut(s)	44, 771
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	5 cut(s)	578, 665, 703, 733, 1114
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	2 cut(s)	79, 788
HindII	GTYRAC	2 cut(s)	79, 788
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	2 cut(s)	71, 1022
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	820, 1019
Hpy166II	GTNNAC	4 cut(s)	79, 464, 466, 788
Hpy188I	TCNGA	6 cut(s)	66, 251, 549, 804, 882, 1021
Hpy188III	TCNNGA	3 cut(s)	392, 1003, 1176
Hpy8I	GTNNAC	4 cut(s)	79, 464, 466, 788
HpyAV	CCTTC	3 cut(s)	283, 598, 1114
HpyCH4III	ACNGT	1 cut(s)	1198
HpyCH4V	TGCA	5 cut(s)	50, 190, 625, 1052, 1146
HpyF10VI	GCNNNNNNNGC	3 cut(s)	740, 768, 922
HpyF3I	CTNAG	1 cut(s)	853
Hsp92II	CATG	5 cut(s)	578, 665, 703, 733, 1114
HspAI	GCGC	1 cut(s)	270
KpnI	GGTACC	1 cut(s)	722
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	223, 339, 658, 1096
LguI	GCTCTTC	1 cut(s)	865
LmnI	GCTCC	4 cut(s)	67, 330, 922, 1034
Lsp1109I	GCAGC	3 cut(s)	81, 1064, 1078
LweI	GCATC	3 cut(s)	667, 839, 1078
MaeI	CTAG	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	4 cut(s)	225, 341, 660, 1098
MboI	GATC	4 cut(s)	223, 339, 658, 1096
MboII	GAAGA	4 cut(s)	589, 882, 899, 1056
MhlI	GDGCHC	2 cut(s)	59, 335
MluCI	AATT	8 cut(s)	28, 102, 421, 489, 601, 619, 791, 928
MlyI	GAGTC	1 cut(s)	1031
MmeI	TCCRAC	2 cut(s)	151, 1061
MnlI	CCTC	7 cut(s)	18, 279, 775, 782, 883, 892, 1150
MroXI	GAANNNNTTC	1 cut(s)	587
MseI	TTAA	5 cut(s)	111, 380, 777, 1014, 1187
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	16
MspCI	CTTAAG	1 cut(s)	379
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	1140
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	1140
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	740, 768, 922
NdeII	GATC	4 cut(s)	223, 339, 658, 1096
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	5 cut(s)	578, 665, 703, 733, 1114
NlaIV	GGNNCC	5 cut(s)	720, 924, 958, 968, 1137
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	865
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	15, 96, 269, 1054, 1093
PleI	GAGTC	1 cut(s)	1030
PpsI	GAGTC	1 cut(s)	1030
PsiI	TTATAA	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	1138
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	1138
PspN4I	GGNNCC	5 cut(s)	720, 924, 958, 968, 1137
PspPI	GGNCC	2 cut(s)	42, 769
RsaI	GTAC	4 cut(s)	457, 465, 720, 1047
RsaNI	GTAC	4 cut(s)	456, 464, 719, 1046
RseI	CAYNNNNRTG	1 cut(s)	666
SacI	GAGCTC	1 cut(s)	335
SalI	GTCGAC	1 cut(s)	786
SapI	GCTCTTC	1 cut(s)	865
SaqAI	TTAA	5 cut(s)	111, 380, 777, 1014, 1187
SatI	GCNGC	5 cut(s)	14, 95, 268, 1053, 1092
Sau3AI	GATC	4 cut(s)	223, 339, 658, 1096
Sau96I	GGNCC	2 cut(s)	42, 769
SchI	GAGTC	1 cut(s)	1031
ScrFI	CCNGG	1 cut(s)	1140
SduI	GDGCHC	2 cut(s)	59, 335
SfaNI	GCATC	3 cut(s)	667, 839, 1078
SfcI	CTRYAG	2 cut(s)	757, 961
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	8 cut(s)	28, 102, 421, 489, 601, 619, 791, 928
SsiI	CCGC	5 cut(s)	11, 14, 267, 272, 943
SspI	AATATT	2 cut(s)	472, 823
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	1138
StyI	CCWWGG	1 cut(s)	1030
TaaI	ACNGT	1 cut(s)	1198
TaqI	TCGA	3 cut(s)	157, 391, 787
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	8 cut(s)	28, 102, 421, 489, 601, 619, 791, 928
TatI	WGTACW	2 cut(s)	463, 1045
TauI	GCSGC	2 cut(s)	16, 270
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	5 cut(s)	111, 380, 777, 1014, 1187
Tru9I	TTAA	5 cut(s)	111, 380, 777, 1014, 1187
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	3 cut(s)	94, 1052, 1091
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	6 cut(s)	315, 413, 426, 482, 1127, 1161
TspRI	CASTG	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	379
XagI	CCTNNNNNAGG	1 cut(s)	779
XapI	RAATTY	3 cut(s)	28, 421, 619
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	787
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.