Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008314.1

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

35409 .. 36554

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008314.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atggagtttcgtgttagaggacttcgtccaaatgagaggacgtatactacattgatagatggattcgcccaacaagggttcttaaatgaagcttacggtcttctgaatgaaatggttgggcgtggattttctccttcagttgtgacttacaatgcccttatcaatggatactgcttattaggcaggatggaagaggcaatgggaattgtacaagatatggtagggaaagggttatcccctgatgtagtaagttatagtactattatcactgggttttgtcggcatcaagaactggagagtgcattccaaatgaagatggagatggtggagaagggtatatcacccgatgcagttacctattcatctctaattcaagaagggagattagttgacgcttgtgatctcttccaagaaatgataagtatggggttgcgtcctgatgaattcacatacacaaccttgatcaatgcttactgcaaggaaggggatttgaataaggctcttcagttgaatgatgaaatgataaagaaaggtttcctacctgatgttgtgacctacagtgtgcttatcaatggacttaacaaacaagctcggacaagagaagcaaagaagcttctactcaagttgttctatgataactctgtcccagatgatgtcacatacaatactctaatagagagctgcacgaatgttgaatttaagagtgtggtagcccttgtaaagggattctgcatgaagggtttgatgaaagaagcagatcaagtttttgaaacagtgataaagaggaaatacaaacctaatggagcagtttatgacgttatcatacatggtcattgtagggaaggaaatgttcaggaggcattgaatctgtacaaggaaatgttgctttctggttttcttcctcatactgtgactgttattgcactgattaaagaacttttcactgagggaatgaacaatgaactgagtcaagtcatagagaacactctgaggagctgtgagcttactgatgctgagcttgcaaagctgcttgttgaaacaaatcataaagaaggaaatttggatgcagtttttaatgtccttggtgaaatggccaaggatggtctccttccaaatagtggagcaagcgcttgtgcaggggggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

381

Amino Acids

42.33

Weight (kDa)

5.02

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1118
AccI	GTMKAC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	1092
AcsI	RAATTY	3 cut(s)	443, 695, 1057
AcuI	CTGAAG	2 cut(s)	120, 488
AfaI	GTAC	3 cut(s)	210, 259, 872
AfeI	AGCGCT	1 cut(s)	1129
AfiI	CCNNNNNNNGG	3 cut(s)	75, 721, 1118
AgsI	TTSAA	7 cut(s)	374, 493, 511, 695, 770, 865, 1037
AluBI	AGCT	8 cut(s)	92, 590, 613, 681, 996, 1003, 1018, 1027
AluI	AGCT	8 cut(s)	92, 590, 613, 681, 996, 1003, 1018, 1027
Alw26I	GTCTC	1 cut(s)	1109
Aor51HI	AGCGCT	1 cut(s)	1129
AoxI	GGCC	1 cut(s)	1092
ApeKI	GCWGC	2 cut(s)	681, 1027
ApoI	RAATTY	3 cut(s)	443, 695, 1057
Asp700I	GAANNNNTTC	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	1130
AsuHPI	GGTGA	2 cut(s)	333, 1097
BalI	TGGCCA	1 cut(s)	1094
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	668, 1014
BccI	CCATC	5 cut(s)	53, 181, 310, 316, 1094
BciVI	GTATCC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	1109
BfmI	CTRYAG	1 cut(s)	556
BfoI	RGCGCY	1 cut(s)	1131
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	2 cut(s)	682, 1028
BlpI	GCTNAGC	1 cut(s)	1014
BlsI	GCNGC	2 cut(s)	683, 1029
BmcAI	AGTACT	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	4 cut(s)	292, 337, 1000, 1054
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	1014
BpuEI	CTTGAG	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	1109
BsaJI	CCNNGG	2 cut(s)	1081, 1095
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 721, 1118
Bse1I	ACTGG	2 cut(s)	274, 297
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	1081, 1095
BseGI	GGATG	3 cut(s)	192, 1069, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	75, 721, 1118
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	4 cut(s)	936, 956, 980, 1005
BseNI	ACTGG	2 cut(s)	274, 297
BseRI	GAGGAG	1 cut(s)	1006
BseXI	GCAGC	2 cut(s)	668, 1014
BsgI	GTGCAG	1 cut(s)	667
BshFI	GGCC	1 cut(s)	1094
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	3 cut(s)	75, 721, 1118
BsmAI	GTCTC	1 cut(s)	1109
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	1094
Bso31I	GGTCTC	1 cut(s)	1109
Bsp1407I	TGTACA	2 cut(s)	208, 870
Bsp143I	GATC	3 cut(s)	400, 462, 757
Bsp1720I	GCTNAGC	1 cut(s)	1014
BspANI	GGCC	1 cut(s)	1094
BspCNI	CTCAG	4 cut(s)	937, 957, 981, 1006
BspQI	GCTCTTC	1 cut(s)	507
BspTNI	GGTCTC	1 cut(s)	1109
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	2 cut(s)	208, 870
BsrI	ACTGG	2 cut(s)	274, 297
BssECI	CCNNGG	2 cut(s)	1081, 1095
BssMI	GATC	3 cut(s)	400, 462, 757
BssNAI	GTATAC	1 cut(s)	45
BssT1I	CCWWGG	2 cut(s)	1081, 1095
Bst1107I	GTATAC	1 cut(s)	45
Bst4CI	ACNGT	5 cut(s)	98, 560, 775, 910, 916
Bst6I	CTCTTC	3 cut(s)	186, 410, 507
BstAUI	TGTACA	2 cut(s)	208, 870
BstC8I	GCNNGC	2 cut(s)	1020, 1126
BstDEI	CTNAG	4 cut(s)	945, 965, 989, 1014
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	3 cut(s)	192, 1069, 1105
BstH2I	RGCGCY	1 cut(s)	1131
BstHHI	GCGC	1 cut(s)	1130
BstKTI	GATC	3 cut(s)	403, 465, 760
BstMAI	GTCTC	1 cut(s)	1109
BstMBI	GATC	3 cut(s)	400, 462, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 1019, 1024
BstSFI	CTRYAG	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	668, 1014
BstV2I	GAAGAC	1 cut(s)	92
BstZ17I	GTATAC	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	1094
BtsCI	GGATG	3 cut(s)	192, 1069, 1105
BtsIMutI	CAGTG	5 cut(s)	267, 565, 780, 923, 942
Cac8I	GCNNGC	2 cut(s)	1020, 1126
CfoI	GCGC	1 cut(s)	1130
CseI	GACGC	2 cut(s)	401, 422
Csp6I	GTAC	3 cut(s)	209, 258, 871
CviAII	CATG	2 cut(s)	733, 827
CviQI	GTAC	3 cut(s)	209, 258, 871
DdeI	CTNAG	4 cut(s)	945, 965, 989, 1014
DpnI	GATC	3 cut(s)	402, 464, 759
DpnII	GATC	3 cut(s)	400, 462, 757
EaeI	YGGCCR	1 cut(s)	1092
Eam1104I	CTCTTC	3 cut(s)	186, 410, 507
EarI	CTCTTC	3 cut(s)	186, 410, 507
Eco130I	CCWWGG	2 cut(s)	1081, 1095
Eco31I	GGTCTC	1 cut(s)	1109
Eco47III	AGCGCT	1 cut(s)	1129
Eco57I	CTGAAG	2 cut(s)	120, 488
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	1081, 1095
ErhI	CCWWGG	2 cut(s)	1081, 1095
FaeI	CATG	2 cut(s)	736, 830
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	2 cut(s)	732, 826
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	682, 1028
FokI	GGATG	3 cut(s)	199, 1076, 1112
Fsp4HI	GCNGC	2 cut(s)	682, 1028
GlaI	GCGC	1 cut(s)	1129
GluI	GCNGC	2 cut(s)	682, 1028
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	1131
HaeIII	GGCC	1 cut(s)	1094
HgaI	GACGC	2 cut(s)	401, 422
HhaI	GCGC	1 cut(s)	1130
Hin1II	CATG	2 cut(s)	736, 830
Hin6I	GCGC	1 cut(s)	1128
HinP1I	GCGC	1 cut(s)	1128
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	2 cut(s)	90, 611
HinfI	GANTC	4 cut(s)	63, 726, 865, 967
HphI	GGTGA	2 cut(s)	333, 1097
Hpy166II	GTNNAC	2 cut(s)	45, 391
Hpy188I	TCNGA	3 cut(s)	105, 594, 990
Hpy188III	TCNNGA	4 cut(s)	287, 374, 437, 854
Hpy8I	GTNNAC	2 cut(s)	45, 391
HpyAV	CCTTC	8 cut(s)	144, 325, 371, 476, 730, 836, 1046, 1118
HpyCH4III	ACNGT	5 cut(s)	98, 560, 775, 910, 916
HpyCH4IV	ACGT	2 cut(s)	41, 816
HpyCH4V	TGCA	9 cut(s)	302, 350, 477, 684, 732, 923, 1022, 1067, 1136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 1019, 1024
HpyF3I	CTNAG	4 cut(s)	945, 965, 989, 1014
HpySE526I	ACGT	2 cut(s)	41, 816
Hsp92II	CATG	2 cut(s)	736, 830
HspAI	GCGC	1 cut(s)	1128
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	400, 462, 757
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	3 cut(s)	803, 993, 1121
Lsp1109I	GCAGC	2 cut(s)	668, 1014
LweI	GCATC	4 cut(s)	292, 337, 1000, 1054
MaeII	ACGT	2 cut(s)	41, 816
MaeIII	GTNAC	5 cut(s)	142, 352, 550, 655, 910
MalI	GATC	3 cut(s)	402, 464, 759
MboI	GATC	3 cut(s)	400, 462, 757
MboII	GAAGA	6 cut(s)	92, 203, 325, 397, 494, 890
MlsI	TGGCCA	1 cut(s)	1094
MluCI	AATT	5 cut(s)	204, 369, 443, 695, 1057
MluNI	TGGCCA	1 cut(s)	1094
MlyI	GAGTC	1 cut(s)	976
MnlI	CCTC	8 cut(s)	11, 30, 187, 777, 850, 912, 940, 984
Mox20I	TGGCCA	1 cut(s)	1094
MroXI	GAANNNNTTC	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	1094
MseI	TTAA	5 cut(s)	83, 579, 699, 930, 1074
Msp20I	TGGCCA	1 cut(s)	1094
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	180, 1019, 1024
NdeII	GATC	3 cut(s)	400, 462, 757
NlaIII	CATG	2 cut(s)	736, 830
NmuCI	GTSAC	4 cut(s)	142, 550, 655, 910
PciSI	GCTCTTC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	63, 726, 865
PflFI	GACNNNGTC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	1118
PkrI	GCNGC	2 cut(s)	683, 1029
PleI	GAGTC	1 cut(s)	975
PpsI	GAGTC	1 cut(s)	975
PsyI	GACNNNGTC	1 cut(s)	24
RsaI	GTAC	3 cut(s)	210, 259, 872
RsaNI	GTAC	3 cut(s)	209, 258, 871
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	5 cut(s)	83, 579, 699, 930, 1074
SatI	GCNGC	2 cut(s)	682, 1028
Sau3AI	GATC	3 cut(s)	400, 462, 757
ScaI	AGTACT	1 cut(s)	259
SchI	GAGTC	1 cut(s)	976
SfaNI	GCATC	4 cut(s)	292, 337, 1000, 1054
SfcI	CTRYAG	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	5 cut(s)	204, 369, 443, 695, 1057
StyI	CCWWGG	2 cut(s)	1081, 1095
TaaI	ACNGT	5 cut(s)	98, 560, 775, 910, 916
TaiI	ACGT	2 cut(s)	44, 819
TasI	AATT	5 cut(s)	204, 369, 443, 695, 1057
TatI	WGTACW	3 cut(s)	208, 257, 870
TfiI	GAWTC	3 cut(s)	63, 726, 865
Tru1I	TTAA	5 cut(s)	83, 579, 699, 930, 1074
Tru9I	TTAA	5 cut(s)	83, 579, 699, 930, 1074
TscAI	CASTG	5 cut(s)	274, 565, 780, 930, 949
TseFI	GTSAC	4 cut(s)	142, 550, 655, 910
TseI	GCWGC	2 cut(s)	681, 1027
Tsp45I	GTSAC	4 cut(s)	142, 550, 655, 910
TspRI	CASTG	5 cut(s)	274, 565, 780, 930, 949
Tth111I	GACNNNGTC	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	1118
XagI	CCTNNNNNAGG	1 cut(s)	719
XapI	RAATTY	3 cut(s)	443, 695, 1057
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	533
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.