Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

55808089 .. 55813842

Gene Structure 5754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGCCCCTCCCAAGACCCCATATTCCAACCCAGTCCTTCCGCTTCGCTCCCTCCGACGCCCTCCTCGCCGACAAAGCAATCACCTACCTCAAGCGCCACCCCCACAACCTCAACTCTCTCTCTTCCCATTTCACCCCTGAAGCCGCCTCCTGCTTACTCCTCAAATCCCAATTCGACCAAACCCTAACCCTAAAGTTCCTCAATTGGGCTCGCAACCACCACCACCACCACCACCGCTTCTTCACCTTCCAGAGCAAGTGCCTCGCCCTCCACATCCTCACCCGCTTCAAGCTCTACAAGTCCGCCCAGTCCCTCGCGGAGGACGTCGCCGTCAACACCGTCGACGACAGGGGCAATTTGGTCTTTCAGTGCCTCACTGACTCGCTGCAGGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATTTCGTTGATAAAGCTATTAACATTGTTAACTTAGCTAAAGCTCATGGATTTATGCCCGGTGTGCTTTCGTATAATGCGATTTTAGATGCAGTGATTAGGTCTAGAGGGTCTGTTCAGTTTGCTGAGGAGGTGTTTAGTGAGATGATTAGGAATGGGGTTTCGCCGAATGTGTATACGTATAACATTTTGATTAGGGGTTTCAGTGCGGCGGGGAATTTGGAAATGGTGCTGTATTTTTGGAGTGAAATGGAGAGGAATGGGTGTTTGCCGAATGTGGTTACGTATAATACATTGATTGATGCTTATTGTAAGTTGAAGAGGATGGATGATGCGTTCGGATTGTTGAGATCGATGGCATTGAAGGGTTTGGAGCCTAATTTGATTTCGTATAATGTGGTGATTAATGGGTTGTGTCGAGAAGGGAGGATGAGTGAGACTAGTCAGGTTCTTGAGGAGATGAAAAGAAAGGGTTTTGTTCCTGATGAGGTGACGAATAATACACTGATTAGTGGGTATTGCAAGGAAGGTAATTTTCACCAAGCACTTGTGTTGCAAGAGGAGATGAGGAGGAATGGCTTGTCTCCGAATGTTGTCACTTATACAGCGTTGATCAATGCCATGTGTAAGGCTAAGAATTTGAATCGAGCAATGGAGTTTTTTGAACAGATGCGTGTTAGAGGACTTCGTCCAAATGAGAGGACGTATACTACATTGATAGATGGCTTTGCCCAACAAGGGTTCTTAAATGAAGCTTACGGTCTTCTGAATGAAATGGTTGGGGGTGGATTTTCTCCTTCAGTTGTGACTTACAATGCCCTTATCAATGGATACTGCTTCTTAGGCAGGATGGAAGAGGCAATGGGAATTGTACAAGATATGGTAGGGAAAGGGTTATCCCCTGATGTAGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAACTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATCACCCGATGCTGTTACCTATTCATCACTAATTCAAGGTGTCTGTCAGCAAGGGAGACTAGTTGACGCTTGTGATCTCTTCCAAGAAATGATAAGTATGGGTTTGCATCCTGATGAATTCACATACACAACCTTGATCAATGCTTACTGCAAGGAAGGGGATTTGAATAAGGCTCTTCAGTTGAATGATGAAATGATAAAGAAAGGTTTCCTACCTGATGTTGTGACCTACAGTGTGCTTATCAATGGACTTAACAAACAAGCTCGGACAAGAGAAGCAAAGAAGCTTCTACTCAAGTTGTTCTATGATAAGTCTGTCCCAGATGATGTCACATACAATACTCTAATAGAGAGCTGCACGAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATCAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGGAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTGTGACTGTTATTGCACTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACTCTGAGGAGCTGTGAGCTTACTGATGCTGAGCTTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTGCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

755

Amino Acids

84.48

Weight (kDa)

6.31

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	153 - 277	6.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	169 - 217	1.7e-13	PPR repeat family
PPR_long	PF17177	193 - 324	4e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	194 - 253	3e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	201 - 233	4.4e-06	PPR repeat
PPR	PF01535	208 - 238	1.8e-06	PPR repeat
PPR_2	PF13041	211 - 254	2e-13	PPR repeat family
PPR_3	PF13812	232 - 285	7.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	236 - 268	7.4e-14	PPR repeat
PPR_2	PF13041	240 - 289	7.9e-19	PPR repeat family
PPR	PF01535	243 - 272	4.9e-08	PPR repeat
PPR_1	PF12854	271 - 304	2e-11	PPR repeat
PPR_2	PF13041	275 - 314	1.9e-11	PPR repeat family
PPR	PF01535	278 - 308	1.3e-07	PPR repeat
PPR_long	PF17177	293 - 406	2.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	299 - 357	1.4e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	306 - 339	6.5e-10	PPR repeat
PPR_2	PF13041	310 - 359	2.2e-18	PPR repeat family
PPR	PF01535	316 - 343	2.5e-06	PPR repeat
PPR_3	PF13812	334 - 385	5.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	341 - 374	2.7e-13	PPR repeat
PPR_2	PF13041	345 - 393	6.3e-19	PPR repeat family
PPR	PF01535	348 - 378	2.4e-07	PPR repeat
TPR_24	PF23276	349 - 441	4.4e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	364 - 455	5.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	370 - 427	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	376 - 409	7.2e-11	PPR repeat
PPR_2	PF13041	384 - 428	2.5e-13	PPR repeat family
PPR	PF01535	384 - 412	1.6e-06	PPR repeat
PPR_long	PF17177	398 - 501	3.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	412 - 444	2e-10	PPR repeat
PPR_2	PF13041	415 - 464	3.1e-18	PPR repeat family
PPR	PF01535	418 - 448	1e-08	PPR repeat
PPR_3	PF13812	439 - 495	2.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	446 - 479	4.6e-10	PPR repeat
PPR_2	PF13041	450 - 499	2.2e-17	PPR repeat family
PPR_long	PF17177	466 - 564	6.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	481 - 513	4.4e-12	PPR repeat
PPR	PF01535	488 - 518	3.7e-07	PPR repeat
PPR_2	PF13041	488 - 534	1.5e-16	PPR repeat family
TPR_24	PF23276	508 - 604	1e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	509 - 565	3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	516 - 548	1.3e-13	PPR repeat
PPR	PF01535	523 - 553	3.4e-08	PPR repeat
PPR_2	PF13041	523 - 568	5.5e-18	PPR repeat family
PPR_1	PF12854	551 - 580	9.1e-06	PPR repeat
PPR_1	PF12854	638 - 668	1.1e-06	PPR repeat
PPR_2	PF13041	640 - 687	1.1e-08	PPR repeat family
PPR	PF01535	644 - 673	4.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AatII	GACGTC	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	379
AccB7I	CCANNNNNTGG	1 cut(s)	2240
AccI	GTMKAC	3 cut(s)	342, 623, 1154
AccII	CGCG	1 cut(s)	317
AciI	CCGC	9 cut(s)	40, 144, 235, 283, 303, 317, 410, 656, 659
AcoI	YGGCCR	1 cut(s)	2214
AcsI	RAATTY	5 cut(s)	448, 664, 1084, 1565, 1817
AcuI	CTGAAG	3 cut(s)	159, 1230, 1610
AcyI	GRCGYC	2 cut(s)	57, 324
AfaI	GTAC	3 cut(s)	1320, 1369, 1994
AfeI	AGCGCT	1 cut(s)	2251
AfiI	CCNNNNNNNGG	5 cut(s)	205, 319, 1185, 1843, 2240
AhlI	ACTAGT	2 cut(s)	887, 1507
AloI	GAACNNNNNNTCC	2 cut(s)	767, 799
Alw26I	GTCTC	3 cut(s)	878, 1035, 1498
Aor51HI	AGCGCT	1 cut(s)	2251
AoxI	GGCC	1 cut(s)	2214
ApeKI	GCWGC	2 cut(s)	385, 1803
ApoI	RAATTY	5 cut(s)	448, 664, 1084, 1565, 1817
AseI	ATTAAT	1 cut(s)	852
Asp700I	GAANNNNTTC	1 cut(s)	1655
AspLEI	GCGC	2 cut(s)	96, 2252
AsuC2I	CCSGG	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	2216
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	1202
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	372, 1790
BccI	CCATC	7 cut(s)	766, 796, 1163, 1291, 1420, 1426, 2216
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciVI	GTATCC	1 cut(s)	1271
BclI	TGATCA	3 cut(s)	1059, 1584, 1899
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	3 cut(s)	878, 1035, 1498
BcuI	ACTAGT	2 cut(s)	887, 1507
BfaI	CTAG	3 cut(s)	552, 888, 1508
BfmI	CTRYAG	2 cut(s)	386, 1678
BfoI	RGCGCY	2 cut(s)	97, 2253
BfuAI	ACCTGC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	1271
BisI	GCNGC	4 cut(s)	144, 386, 657, 1804
BlpI	GCTNAGC	1 cut(s)	2136
BlsI	GCNGC	4 cut(s)	145, 387, 658, 1805
BmcAI	AGTACT	1 cut(s)	1369
Bme1390I	CCNGG	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	1 cut(s)	507
BmrI	ACTGGG	3 cut(s)	25, 301, 1389
BmsI	GCATC	9 cut(s)	526, 739, 769, 1107, 1402, 1447, 1564, 2122, 2176
BmuI	ACTGGG	3 cut(s)	25, 301, 1389
BpiI	GAAGAC	1 cut(s)	1202
BpmI	CTGGAG	1 cut(s)	1424
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	2136
BpuEI	CTTGAG	3 cut(s)	74, 920, 1727
BpuMI	CCSGG	1 cut(s)	507
Bsa29I	ATCGAT	1 cut(s)	800
BsaAI	YACGTR	2 cut(s)	627, 732
BsaHI	GRCGYC	2 cut(s)	57, 324
BsaJI	CCNNGG	2 cut(s)	2203, 2217
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 319, 1185, 1843, 2240
Bse1I	ACTGG	4 cut(s)	31, 307, 1384, 1407
Bse3DI	GCAATG	2 cut(s)	1104, 1314
BseCI	ATCGAT	1 cut(s)	800
BseDI	CCNNGG	2 cut(s)	2203, 2217
BseGI	GGATG	8 cut(s)	273, 777, 781, 882, 1302, 1555, 2191, 2227
BseLI	CCNNNNNNNGG	5 cut(s)	205, 319, 1185, 1843, 2240
BseMI	GCAATG	2 cut(s)	1104, 1314
BseMII	CTCAG	5 cut(s)	564, 2058, 2078, 2102, 2127
BseNI	ACTGG	4 cut(s)	31, 307, 1384, 1407
BseRI	GAGGAG	7 cut(s)	53, 149, 590, 917, 1022, 1030, 2128
BseXI	GCAGC	2 cut(s)	372, 1790
BsgI	GTGCAG	1 cut(s)	1789
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	2216
BshVI	ATCGAT	1 cut(s)	800
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	2 cut(s)	295, 1751
BslI	CCNNNNNNNGG	5 cut(s)	205, 319, 1185, 1843, 2240
BsmAI	GTCTC	3 cut(s)	878, 1035, 1498
BsmFI	GGGAC	2 cut(s)	295, 1751
BsmI	GAATGC	1 cut(s)	1412
BsnI	GGCC	1 cut(s)	2216
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	2 cut(s)	1318, 1992
Bsp143I	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
Bsp1720I	GCTNAGC	1 cut(s)	2136
BspACI	CCGC	9 cut(s)	40, 144, 235, 283, 303, 317, 410, 656, 659
BspANI	GGCC	1 cut(s)	2216
BspCNI	CTCAG	5 cut(s)	565, 2059, 2079, 2103, 2128
BspDI	ATCGAT	1 cut(s)	800
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	822
BspMAI	CTGCAG	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	379
BspQI	GCTCTTC	1 cut(s)	1629
BsrDI	GCAATG	2 cut(s)	1104, 1314
BsrGI	TGTACA	2 cut(s)	1318, 1992
BsrI	ACTGG	4 cut(s)	31, 307, 1384, 1407
BssECI	CCNNGG	2 cut(s)	2203, 2217
BssMI	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
BssNAI	GTATAC	2 cut(s)	624, 1155
BssNI	GRCGYC	2 cut(s)	57, 324
BssT1I	CCWWGG	2 cut(s)	2203, 2217
Bst1107I	GTATAC	2 cut(s)	624, 1155
Bst4CI	ACNGT	6 cut(s)	340, 1208, 1682, 1897, 2032, 2038
Bst6I	CTCTTC	5 cut(s)	127, 761, 1296, 1532, 1629
BstACI	GRCGYC	2 cut(s)	57, 324
BstAUI	TGTACA	2 cut(s)	1318, 1992
BstBAI	YACGTR	2 cut(s)	627, 732
BstC8I	GCNNGC	3 cut(s)	211, 2142, 2248
BstDEI	CTNAG	8 cut(s)	481, 573, 1080, 1288, 2067, 2087, 2111, 2136
BstENI	CCTNNNNNAGG	2 cut(s)	317, 1841
BstF5I	GGATG	8 cut(s)	273, 777, 781, 882, 1302, 1555, 2191, 2227
BstFNI	CGCG	1 cut(s)	317
BstH2I	RGCGCY	2 cut(s)	97, 2253
BstHHI	GCGC	2 cut(s)	96, 2252
BstKTI	GATC	6 cut(s)	800, 1062, 1525, 1587, 1882, 1902
BstMAI	GTCTC	3 cut(s)	878, 1035, 1498
BstMBI	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 74, 402, 511, 1290, 2141, 2146
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	386, 1678
BstSNI	TACGTA	2 cut(s)	627, 732
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	372, 1790
BstV2I	GAAGAC	1 cut(s)	1202
BstZ17I	GTATAC	2 cut(s)	624, 1155
Bsu15I	ATCGAT	1 cut(s)	800
BsuI	GTATCC	1 cut(s)	1271
BsuRI	GGCC	1 cut(s)	2216
BsuTUI	ATCGAT	1 cut(s)	800
BtsCI	GGATG	8 cut(s)	273, 777, 781, 882, 1302, 1555, 2191, 2227
BtsI	GCAGTG	1 cut(s)	546
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	3 cut(s)	211, 2142, 2248
CfoI	GCGC	2 cut(s)	96, 2252
ClaI	ATCGAT	1 cut(s)	800
CseI	GACGC	2 cut(s)	65, 1523
Csp6I	GTAC	3 cut(s)	1319, 1368, 1993
CviAII	CATG	4 cut(s)	494, 1069, 1855, 1949
CviQI	GTAC	3 cut(s)	1319, 1368, 1993
DdeI	CTNAG	8 cut(s)	481, 573, 1080, 1288, 2067, 2087, 2111, 2136
DpnI	GATC	6 cut(s)	799, 1061, 1524, 1586, 1881, 1901
DpnII	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	2214
Eam1104I	CTCTTC	5 cut(s)	127, 761, 1296, 1532, 1629
EarI	CTCTTC	5 cut(s)	127, 761, 1296, 1532, 1629
EciI	GGCGGA	1 cut(s)	292
Eco105I	TACGTA	2 cut(s)	627, 732
Eco130I	CCWWGG	2 cut(s)	2203, 2217
Eco24I	GRGCYC	1 cut(s)	211
Eco47III	AGCGCT	1 cut(s)	2251
Eco57I	CTGAAG	3 cut(s)	159, 1230, 1610
EcoNI	CCTNNNNNAGG	2 cut(s)	317, 1841
EcoRI	GAATTC	1 cut(s)	1565
EcoT14I	CCWWGG	2 cut(s)	2203, 2217
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	2203, 2217
FaeI	CATG	4 cut(s)	497, 1072, 1858, 1952
FaqI	GGGAC	2 cut(s)	295, 1751
FatI	CATG	4 cut(s)	493, 1068, 1854, 1948
FauI	CCCGC	2 cut(s)	290, 652
FbaI	TGATCA	3 cut(s)	1059, 1584, 1899
FblI	GTMKAC	3 cut(s)	342, 623, 1154
Fnu4HI	GCNGC	4 cut(s)	144, 386, 657, 1804
FokI	GGATG	8 cut(s)	260, 784, 788, 889, 1309, 1542, 2198, 2234
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	4 cut(s)	144, 386, 657, 1804
FspBI	CTAG	3 cut(s)	552, 888, 1508
GlaI	GCGC	2 cut(s)	95, 2251
GluI	GCNGC	4 cut(s)	144, 386, 657, 1804
GsuI	CTGGAG	1 cut(s)	1424
HaeII	RGCGCY	2 cut(s)	97, 2253
HaeIII	GGCC	1 cut(s)	2216
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	2 cut(s)	65, 1523
HhaI	GCGC	2 cut(s)	96, 2252
Hin1I	GRCGYC	2 cut(s)	57, 324
Hin1II	CATG	4 cut(s)	497, 1072, 1858, 1952
Hin6I	GCGC	2 cut(s)	94, 2250
HinP1I	GCGC	2 cut(s)	94, 2250
HincII	GTYRAC	4 cut(s)	334, 343, 478, 1513
HindII	GTYRAC	4 cut(s)	334, 343, 478, 1513
HindIII	AAGCTT	2 cut(s)	1200, 1733
HinfI	GANTC	5 cut(s)	380, 1090, 1848, 1987, 2089
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	1 cut(s)	507
Hpy166II	GTNNAC	6 cut(s)	334, 343, 478, 624, 1155, 1513
Hpy188I	TCNGA	6 cut(s)	55, 788, 1035, 1215, 1716, 2112
Hpy188III	TCNNGA	9 cut(s)	250, 552, 866, 899, 929, 1397, 1559, 1903, 1976
Hpy8I	GTNNAC	6 cut(s)	334, 343, 478, 624, 1155, 1513
Hpy99I	CGWCG	4 cut(s)	59, 329, 344, 347
HpyCH4III	ACNGT	6 cut(s)	340, 1208, 1682, 1897, 2032, 2038
HpyCH4IV	ACGT	5 cut(s)	324, 626, 731, 1151, 1938
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 74, 402, 511, 1290, 2141, 2146
HpyF3I	CTNAG	8 cut(s)	481, 573, 1080, 1288, 2067, 2087, 2111, 2136
HpySE526I	ACGT	5 cut(s)	324, 626, 731, 1151, 1938
Hsp92I	GRCGYC	2 cut(s)	57, 324
Hsp92II	CATG	4 cut(s)	497, 1072, 1858, 1952
HspAI	GCGC	2 cut(s)	94, 2250
Ksp22I	TGATCA	3 cut(s)	1059, 1584, 1899
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
LguI	GCTCTTC	1 cut(s)	1629
LmnI	GCTCC	5 cut(s)	52, 820, 1925, 2115, 2243
Lsp1109I	GCAGC	2 cut(s)	372, 1790
LweI	GCATC	9 cut(s)	526, 739, 769, 1107, 1402, 1447, 1564, 2122, 2176
MaeI	CTAG	3 cut(s)	552, 888, 1508
MaeII	ACGT	5 cut(s)	324, 626, 731, 1151, 1938
MaeIII	GTNAC	8 cut(s)	727, 937, 1042, 1252, 1462, 1672, 1777, 2032
MalI	GATC	6 cut(s)	799, 1061, 1524, 1586, 1881, 1901
MboI	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
MboII	GAAGA	9 cut(s)	114, 232, 778, 1202, 1313, 1435, 1519, 1616, 2012
MfeI	CAATTG	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	2216
MluNI	TGGCCA	1 cut(s)	2216
MlyI	GAGTC	2 cut(s)	374, 2098
MmeI	TCCRAC	2 cut(s)	50, 78
Mox20I	TGGCCA	1 cut(s)	2216
MroXI	GAANNNNTTC	1 cut(s)	1655
MscI	TGGCCA	1 cut(s)	2216
MseI	TTAA	8 cut(s)	468, 477, 852, 1193, 1701, 1821, 2052, 2196
MslI	CAYNNNNRTG	1 cut(s)	1560
Msp20I	TGGCCA	1 cut(s)	2216
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	1412
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	7 cut(s)	65, 74, 402, 511, 1290, 2141, 2146
NciI	CCSGG	1 cut(s)	507
NdeII	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
NlaIII	CATG	4 cut(s)	497, 1072, 1858, 1952
NlaIV	GGNNCC	1 cut(s)	822
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	6 cut(s)	937, 1042, 1252, 1672, 1777, 2032
PciSI	GCTCTTC	1 cut(s)	1629
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 321, 524
PctI	GAATGC	1 cut(s)	1412
PdmI	GAANNNNTTC	1 cut(s)	1655
PfeI	GAWTC	3 cut(s)	1090, 1848, 1987
PflFI	GACNNNGTC	1 cut(s)	1134
PflMI	CCANNNNNTGG	1 cut(s)	2240
PkrI	GCNGC	4 cut(s)	145, 387, 658, 1805
PleI	GAGTC	2 cut(s)	374, 2097
PpsI	GAGTC	2 cut(s)	374, 2097
Ppu21I	YACGTR	2 cut(s)	627, 732
PshBI	ATTAAT	1 cut(s)	852
PspN4I	GGNNCC	1 cut(s)	822
PstI	CTGCAG	1 cut(s)	390
PsyI	GACNNNGTC	1 cut(s)	1134
RsaI	GTAC	3 cut(s)	1320, 1369, 1994
RsaNI	GTAC	3 cut(s)	1319, 1368, 1993
RseI	CAYNNNNRTG	1 cut(s)	1560
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	1629
SaqAI	TTAA	8 cut(s)	468, 477, 852, 1193, 1701, 1821, 2052, 2196
SatI	GCNGC	4 cut(s)	144, 386, 657, 1804
Sau3AI	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
ScaI	AGTACT	1 cut(s)	1369
SchI	GAGTC	2 cut(s)	374, 2098
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	9 cut(s)	526, 739, 769, 1107, 1402, 1447, 1564, 2122, 2176
SfcI	CTRYAG	2 cut(s)	386, 1678
SgrDI	CGTCGACG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	1560
SmlI	CTYRAG	3 cut(s)	89, 899, 1742
SmoI	CTYRAG	3 cut(s)	89, 899, 1742
SnaBI	TACGTA	2 cut(s)	627, 732
SpeI	ACTAGT	2 cut(s)	887, 1507
SsiI	CCGC	9 cut(s)	40, 144, 235, 283, 303, 317, 410, 656, 659
SspMI	CTAG	3 cut(s)	552, 888, 1508
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	2 cut(s)	2203, 2217
TaaI	ACNGT	6 cut(s)	340, 1208, 1682, 1897, 2032, 2038
TaiI	ACGT	5 cut(s)	327, 629, 734, 1154, 1941
TaqI	TCGA	6 cut(s)	174, 342, 417, 800, 865, 1093
TatI	WGTACW	3 cut(s)	1318, 1367, 1992
TauI	GCSGC	2 cut(s)	146, 659
TfiI	GAWTC	3 cut(s)	1090, 1848, 1987
Tru1I	TTAA	8 cut(s)	468, 477, 852, 1193, 1701, 1821, 2052, 2196
Tru9I	TTAA	8 cut(s)	468, 477, 852, 1193, 1701, 1821, 2052, 2196
TseFI	GTSAC	6 cut(s)	937, 1042, 1252, 1672, 1777, 2032
TseI	GCWGC	2 cut(s)	385, 1803
Tsp45I	GTSAC	6 cut(s)	937, 1042, 1252, 1672, 1777, 2032
Tth111I	GACNNNGTC	1 cut(s)	1134
Van91I	CCANNNNNTGG	1 cut(s)	2240
VspI	ATTAAT	1 cut(s)	852
XagI	CCTNNNNNAGG	2 cut(s)	317, 1841
XapI	RAATTY	5 cut(s)	448, 664, 1084, 1565, 1817
XbaI	TCTAGA	1 cut(s)	551
XmiI	GTMKAC	3 cut(s)	342, 623, 1154
XmnI	GAANNNNTTC	1 cut(s)	1655
XspI	CTAG	3 cut(s)	552, 888, 1508
ZraI	GACGTC	1 cut(s)	325
ZrmI	AGTACT	1 cut(s)	1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.