Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

56056240 .. 56060953

Gene Structure 4714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGCCCCTCCCAAGACCCCATATTCCAACCCAGTCCTTCCGCTTCGCTCCCTCCGACGCCCTCCTCGCCGACAAAGCAATCACCTACCTCAAGCGCCACCCCCACAACCTCAACTCTCTCTCTTCCCATTTCACCCCTGAAGCCGCCTCCTGCTTACTCCTCAAATCCCAATTCGACCAAACCCTAACCCTAAAGTTCCTCAATTGGGCTCGCAACCACCACCACCACCACCACCGCTTCTTCACCTTCCAGAGCAAGTGCCTCGCCCTCCACATCCTCACCCGCTTCAAGCTCTACAAGTCCGCCCAGTCCCTCGCGGAGGACGTCGCCGTCAACACCGTCGACGACAGGGGCAATTTGGTCTTTCAGTGCCTCACTGACTCGCTGCAGGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATTTCGTTGATAAAGCTATTAACATTGTTAACTTAGCTAAAGCTCATGGATTTATGCCCGGTGTGCTTTCGTATAATGCGATTTTAGATGCAGTGATTAGGTCTAGAGGGTCTGTTCAGTTTGCTGAGGAGGTGTTTAGTGAGATGATTAGGAATGGGGTTTCGCCGAATGTGTATACGTATAACATTTTGATTAGGGGTTTCAGTGCGGCGGGGAATTTGGAAATGGTGCTGTATTTTTGGAGTGAAATGGAGAGGAATGGGTGTTTGCCGAATGTGGTTACGTATAATACATTGATTGATGCTTATTGTAAGTTGAAGAGGATGGATGATGCGTTCGGATTGTTGAGATCGATGGCATTGAAGGGTTTGGAGCCTAATTTGATTTCGTATAATGTGGTGATTAATGGGTTGTGTCGAGAAGGGAGGATGAGTGAGACTAGTCAGGTTCTTGAGGAGATGAAAAGAAAGGGTTTTGTTCCTGATGAGGTGACGAATAATACACTGATTAGTGGGTATTGCAAGGAAGGTAATTTTCACCAAGCACTTGTGTTGCAAGAGGAGATGAGGAGGAATGGCTTGTCTCCGAATGTTGTCACTTATACAGCGTTGATCAATGCCATGTGTAAGGCTAAGAATTTGAATCGAGCAATGGAGTTTTTTGAACAGATGCGTGTTAGAGGACTTCGTCCAAATGAGAGGACGTATACTACATTGATAGATGGCTTTGCCCAACAAGGGTTCTTAAATGAAGCTTACGGTCTTCTGAATGAAATGGTTGGGGGTGGATTTTCTCCTTCAGTTGTGACTTACAATGCCCTTATCAATGGATACTGCTTCTTAGGCAGGATGGAAGAGGCAATGGGAATTGTACAAGATATGGTAGGGAAAGGGTTATCCCCTGATGTAGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAACTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATCACCCGATGCTGTTACCTATTCATCACTAATTCAAGGTGTCTGTCAGCAAGGGAGACTAGTTGACGCTTGTGATCTCTTCCAAGAAATGATAAGTATGGGTTTGCATCCTGATGAATTCACATACACAACCTTGATCAATGCTTACTGCAAGGAAGGGGATTTGAATAAGGCTCTTCAGTTGAATGATGAAATGATAAAGAAAGGTTTCCTACCTGATGTTGTGACCTACAGTGTGCTTATCAATGGACTTAACAAACAAGCTCGGACAAGAGAAGCAAAGAAGCTTCTACTCAAGTTGTTCTATGATAAGTCTGTCCCAGATGATGTCACATACAATACTCTAATAGAGAGCTGCACGAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATCAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGGAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTGTGACTGTTATTGCACTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACTCTGAGGAGCTGTGAGCTTACTGATGCTGAGCTTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTGCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

755

Amino Acids

84.48

Weight (kDa)

6.31

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	153 - 277	6.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	169 - 217	1.7e-13	PPR repeat family
PPR_long	PF17177	193 - 324	4e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	194 - 253	3e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	201 - 233	4.4e-06	PPR repeat
PPR	PF01535	208 - 238	1.8e-06	PPR repeat
PPR_2	PF13041	211 - 254	2e-13	PPR repeat family
PPR_3	PF13812	232 - 285	7.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	236 - 268	7.4e-14	PPR repeat
PPR_2	PF13041	240 - 289	7.9e-19	PPR repeat family
PPR	PF01535	243 - 272	4.9e-08	PPR repeat
PPR_1	PF12854	271 - 304	2e-11	PPR repeat
PPR_2	PF13041	275 - 314	1.9e-11	PPR repeat family
PPR	PF01535	278 - 308	1.3e-07	PPR repeat
PPR_long	PF17177	293 - 406	2.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	299 - 357	1.4e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	306 - 339	6.5e-10	PPR repeat
PPR_2	PF13041	310 - 359	2.2e-18	PPR repeat family
PPR	PF01535	316 - 343	2.5e-06	PPR repeat
PPR_3	PF13812	334 - 385	5.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	341 - 374	2.7e-13	PPR repeat
PPR_2	PF13041	345 - 393	6.3e-19	PPR repeat family
PPR	PF01535	348 - 378	2.4e-07	PPR repeat
TPR_24	PF23276	349 - 441	4.4e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	364 - 455	5.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	370 - 427	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	376 - 409	7.2e-11	PPR repeat
PPR_2	PF13041	384 - 428	2.5e-13	PPR repeat family
PPR	PF01535	384 - 412	1.6e-06	PPR repeat
PPR_long	PF17177	398 - 501	3.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	412 - 444	2e-10	PPR repeat
PPR_2	PF13041	415 - 464	3.1e-18	PPR repeat family
PPR	PF01535	418 - 448	1e-08	PPR repeat
PPR_3	PF13812	439 - 495	2.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	446 - 479	4.6e-10	PPR repeat
PPR_2	PF13041	450 - 499	2.2e-17	PPR repeat family
PPR_long	PF17177	466 - 564	6.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	481 - 513	4.4e-12	PPR repeat
PPR	PF01535	488 - 518	3.7e-07	PPR repeat
PPR_2	PF13041	488 - 534	1.5e-16	PPR repeat family
TPR_24	PF23276	508 - 604	1e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	509 - 565	3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	516 - 548	1.3e-13	PPR repeat
PPR	PF01535	523 - 553	3.4e-08	PPR repeat
PPR_2	PF13041	523 - 568	5.5e-18	PPR repeat family
PPR_1	PF12854	551 - 580	9.1e-06	PPR repeat
PPR_1	PF12854	638 - 668	1.1e-06	PPR repeat
PPR_2	PF13041	640 - 687	1.1e-08	PPR repeat family
PPR	PF01535	644 - 673	4.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AatII	GACGTC	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	379
AccB7I	CCANNNNNTGG	1 cut(s)	2240
AccI	GTMKAC	3 cut(s)	342, 623, 1154
AccII	CGCG	1 cut(s)	317
AciI	CCGC	9 cut(s)	40, 144, 235, 283, 303, 317, 410, 656, 659
AcoI	YGGCCR	1 cut(s)	2214
AcsI	RAATTY	5 cut(s)	448, 664, 1084, 1565, 1817
AcuI	CTGAAG	3 cut(s)	159, 1230, 1610
AcyI	GRCGYC	2 cut(s)	57, 324
AfaI	GTAC	3 cut(s)	1320, 1369, 1994
AfeI	AGCGCT	1 cut(s)	2251
AfiI	CCNNNNNNNGG	5 cut(s)	205, 319, 1185, 1843, 2240
AhlI	ACTAGT	2 cut(s)	887, 1507
AloI	GAACNNNNNNTCC	2 cut(s)	767, 799
Alw26I	GTCTC	3 cut(s)	878, 1035, 1498
Aor51HI	AGCGCT	1 cut(s)	2251
AoxI	GGCC	1 cut(s)	2214
ApeKI	GCWGC	2 cut(s)	385, 1803
ApoI	RAATTY	5 cut(s)	448, 664, 1084, 1565, 1817
AseI	ATTAAT	1 cut(s)	852
Asp700I	GAANNNNTTC	1 cut(s)	1655
AspLEI	GCGC	2 cut(s)	96, 2252
AsuC2I	CCSGG	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	2216
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	1202
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	372, 1790
BccI	CCATC	7 cut(s)	766, 796, 1163, 1291, 1420, 1426, 2216
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciVI	GTATCC	1 cut(s)	1271
BclI	TGATCA	3 cut(s)	1059, 1584, 1899
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	3 cut(s)	878, 1035, 1498
BcuI	ACTAGT	2 cut(s)	887, 1507
BfaI	CTAG	3 cut(s)	552, 888, 1508
BfmI	CTRYAG	2 cut(s)	386, 1678
BfoI	RGCGCY	2 cut(s)	97, 2253
BfuAI	ACCTGC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	1271
BisI	GCNGC	4 cut(s)	144, 386, 657, 1804
BlpI	GCTNAGC	1 cut(s)	2136
BlsI	GCNGC	4 cut(s)	145, 387, 658, 1805
BmcAI	AGTACT	1 cut(s)	1369
Bme1390I	CCNGG	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	1 cut(s)	507
BmrI	ACTGGG	3 cut(s)	25, 301, 1389
BmsI	GCATC	9 cut(s)	526, 739, 769, 1107, 1402, 1447, 1564, 2122, 2176
BmuI	ACTGGG	3 cut(s)	25, 301, 1389
BpiI	GAAGAC	1 cut(s)	1202
BpmI	CTGGAG	1 cut(s)	1424
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	2136
BpuEI	CTTGAG	3 cut(s)	74, 920, 1727
BpuMI	CCSGG	1 cut(s)	507
Bsa29I	ATCGAT	1 cut(s)	800
BsaAI	YACGTR	2 cut(s)	627, 732
BsaHI	GRCGYC	2 cut(s)	57, 324
BsaJI	CCNNGG	2 cut(s)	2203, 2217
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 319, 1185, 1843, 2240
Bse1I	ACTGG	4 cut(s)	31, 307, 1384, 1407
Bse3DI	GCAATG	2 cut(s)	1104, 1314
BseCI	ATCGAT	1 cut(s)	800
BseDI	CCNNGG	2 cut(s)	2203, 2217
BseGI	GGATG	8 cut(s)	273, 777, 781, 882, 1302, 1555, 2191, 2227
BseLI	CCNNNNNNNGG	5 cut(s)	205, 319, 1185, 1843, 2240
BseMI	GCAATG	2 cut(s)	1104, 1314
BseMII	CTCAG	5 cut(s)	564, 2058, 2078, 2102, 2127
BseNI	ACTGG	4 cut(s)	31, 307, 1384, 1407
BseRI	GAGGAG	7 cut(s)	53, 149, 590, 917, 1022, 1030, 2128
BseXI	GCAGC	2 cut(s)	372, 1790
BsgI	GTGCAG	1 cut(s)	1789
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	2216
BshVI	ATCGAT	1 cut(s)	800
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	2 cut(s)	295, 1751
BslI	CCNNNNNNNGG	5 cut(s)	205, 319, 1185, 1843, 2240
BsmAI	GTCTC	3 cut(s)	878, 1035, 1498
BsmFI	GGGAC	2 cut(s)	295, 1751
BsmI	GAATGC	1 cut(s)	1412
BsnI	GGCC	1 cut(s)	2216
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	2 cut(s)	1318, 1992
Bsp143I	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
Bsp1720I	GCTNAGC	1 cut(s)	2136
BspACI	CCGC	9 cut(s)	40, 144, 235, 283, 303, 317, 410, 656, 659
BspANI	GGCC	1 cut(s)	2216
BspCNI	CTCAG	5 cut(s)	565, 2059, 2079, 2103, 2128
BspDI	ATCGAT	1 cut(s)	800
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	822
BspMAI	CTGCAG	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	379
BspQI	GCTCTTC	1 cut(s)	1629
BsrDI	GCAATG	2 cut(s)	1104, 1314
BsrGI	TGTACA	2 cut(s)	1318, 1992
BsrI	ACTGG	4 cut(s)	31, 307, 1384, 1407
BssECI	CCNNGG	2 cut(s)	2203, 2217
BssMI	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
BssNAI	GTATAC	2 cut(s)	624, 1155
BssNI	GRCGYC	2 cut(s)	57, 324
BssT1I	CCWWGG	2 cut(s)	2203, 2217
Bst1107I	GTATAC	2 cut(s)	624, 1155
Bst4CI	ACNGT	6 cut(s)	340, 1208, 1682, 1897, 2032, 2038
Bst6I	CTCTTC	5 cut(s)	127, 761, 1296, 1532, 1629
BstACI	GRCGYC	2 cut(s)	57, 324
BstAUI	TGTACA	2 cut(s)	1318, 1992
BstBAI	YACGTR	2 cut(s)	627, 732
BstC8I	GCNNGC	3 cut(s)	211, 2142, 2248
BstDEI	CTNAG	8 cut(s)	481, 573, 1080, 1288, 2067, 2087, 2111, 2136
BstENI	CCTNNNNNAGG	2 cut(s)	317, 1841
BstF5I	GGATG	8 cut(s)	273, 777, 781, 882, 1302, 1555, 2191, 2227
BstFNI	CGCG	1 cut(s)	317
BstH2I	RGCGCY	2 cut(s)	97, 2253
BstHHI	GCGC	2 cut(s)	96, 2252
BstKTI	GATC	6 cut(s)	800, 1062, 1525, 1587, 1882, 1902
BstMAI	GTCTC	3 cut(s)	878, 1035, 1498
BstMBI	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 74, 402, 511, 1290, 2141, 2146
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	386, 1678
BstSNI	TACGTA	2 cut(s)	627, 732
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	372, 1790
BstV2I	GAAGAC	1 cut(s)	1202
BstZ17I	GTATAC	2 cut(s)	624, 1155
Bsu15I	ATCGAT	1 cut(s)	800
BsuI	GTATCC	1 cut(s)	1271
BsuRI	GGCC	1 cut(s)	2216
BsuTUI	ATCGAT	1 cut(s)	800
BtsCI	GGATG	8 cut(s)	273, 777, 781, 882, 1302, 1555, 2191, 2227
BtsI	GCAGTG	1 cut(s)	546
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	3 cut(s)	211, 2142, 2248
CfoI	GCGC	2 cut(s)	96, 2252
ClaI	ATCGAT	1 cut(s)	800
CseI	GACGC	2 cut(s)	65, 1523
Csp6I	GTAC	3 cut(s)	1319, 1368, 1993
CviAII	CATG	4 cut(s)	494, 1069, 1855, 1949
CviQI	GTAC	3 cut(s)	1319, 1368, 1993
DdeI	CTNAG	8 cut(s)	481, 573, 1080, 1288, 2067, 2087, 2111, 2136
DpnI	GATC	6 cut(s)	799, 1061, 1524, 1586, 1881, 1901
DpnII	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	2214
Eam1104I	CTCTTC	5 cut(s)	127, 761, 1296, 1532, 1629
EarI	CTCTTC	5 cut(s)	127, 761, 1296, 1532, 1629
EciI	GGCGGA	1 cut(s)	292
Eco105I	TACGTA	2 cut(s)	627, 732
Eco130I	CCWWGG	2 cut(s)	2203, 2217
Eco24I	GRGCYC	1 cut(s)	211
Eco47III	AGCGCT	1 cut(s)	2251
Eco57I	CTGAAG	3 cut(s)	159, 1230, 1610
EcoNI	CCTNNNNNAGG	2 cut(s)	317, 1841
EcoRI	GAATTC	1 cut(s)	1565
EcoT14I	CCWWGG	2 cut(s)	2203, 2217
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	2203, 2217
FaeI	CATG	4 cut(s)	497, 1072, 1858, 1952
FaqI	GGGAC	2 cut(s)	295, 1751
FatI	CATG	4 cut(s)	493, 1068, 1854, 1948
FauI	CCCGC	2 cut(s)	290, 652
FbaI	TGATCA	3 cut(s)	1059, 1584, 1899
FblI	GTMKAC	3 cut(s)	342, 623, 1154
Fnu4HI	GCNGC	4 cut(s)	144, 386, 657, 1804
FokI	GGATG	8 cut(s)	260, 784, 788, 889, 1309, 1542, 2198, 2234
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	4 cut(s)	144, 386, 657, 1804
FspBI	CTAG	3 cut(s)	552, 888, 1508
GlaI	GCGC	2 cut(s)	95, 2251
GluI	GCNGC	4 cut(s)	144, 386, 657, 1804
GsuI	CTGGAG	1 cut(s)	1424
HaeII	RGCGCY	2 cut(s)	97, 2253
HaeIII	GGCC	1 cut(s)	2216
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	2 cut(s)	65, 1523
HhaI	GCGC	2 cut(s)	96, 2252
Hin1I	GRCGYC	2 cut(s)	57, 324
Hin1II	CATG	4 cut(s)	497, 1072, 1858, 1952
Hin6I	GCGC	2 cut(s)	94, 2250
HinP1I	GCGC	2 cut(s)	94, 2250
HincII	GTYRAC	4 cut(s)	334, 343, 478, 1513
HindII	GTYRAC	4 cut(s)	334, 343, 478, 1513
HindIII	AAGCTT	2 cut(s)	1200, 1733
HinfI	GANTC	5 cut(s)	380, 1090, 1848, 1987, 2089
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	1 cut(s)	507
Hpy166II	GTNNAC	6 cut(s)	334, 343, 478, 624, 1155, 1513
Hpy188I	TCNGA	6 cut(s)	55, 788, 1035, 1215, 1716, 2112
Hpy188III	TCNNGA	9 cut(s)	250, 552, 866, 899, 929, 1397, 1559, 1903, 1976
Hpy8I	GTNNAC	6 cut(s)	334, 343, 478, 624, 1155, 1513
Hpy99I	CGWCG	4 cut(s)	59, 329, 344, 347
HpyCH4III	ACNGT	6 cut(s)	340, 1208, 1682, 1897, 2032, 2038
HpyCH4IV	ACGT	5 cut(s)	324, 626, 731, 1151, 1938
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 74, 402, 511, 1290, 2141, 2146
HpyF3I	CTNAG	8 cut(s)	481, 573, 1080, 1288, 2067, 2087, 2111, 2136
HpySE526I	ACGT	5 cut(s)	324, 626, 731, 1151, 1938
Hsp92I	GRCGYC	2 cut(s)	57, 324
Hsp92II	CATG	4 cut(s)	497, 1072, 1858, 1952
HspAI	GCGC	2 cut(s)	94, 2250
Ksp22I	TGATCA	3 cut(s)	1059, 1584, 1899
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
LguI	GCTCTTC	1 cut(s)	1629
LmnI	GCTCC	5 cut(s)	52, 820, 1925, 2115, 2243
Lsp1109I	GCAGC	2 cut(s)	372, 1790
LweI	GCATC	9 cut(s)	526, 739, 769, 1107, 1402, 1447, 1564, 2122, 2176
MaeI	CTAG	3 cut(s)	552, 888, 1508
MaeII	ACGT	5 cut(s)	324, 626, 731, 1151, 1938
MaeIII	GTNAC	8 cut(s)	727, 937, 1042, 1252, 1462, 1672, 1777, 2032
MalI	GATC	6 cut(s)	799, 1061, 1524, 1586, 1881, 1901
MboI	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
MboII	GAAGA	9 cut(s)	114, 232, 778, 1202, 1313, 1435, 1519, 1616, 2012
MfeI	CAATTG	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	2216
MluNI	TGGCCA	1 cut(s)	2216
MlyI	GAGTC	2 cut(s)	374, 2098
MmeI	TCCRAC	2 cut(s)	50, 78
Mox20I	TGGCCA	1 cut(s)	2216
MroXI	GAANNNNTTC	1 cut(s)	1655
MscI	TGGCCA	1 cut(s)	2216
MseI	TTAA	8 cut(s)	468, 477, 852, 1193, 1701, 1821, 2052, 2196
MslI	CAYNNNNRTG	1 cut(s)	1560
Msp20I	TGGCCA	1 cut(s)	2216
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	1412
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	7 cut(s)	65, 74, 402, 511, 1290, 2141, 2146
NciI	CCSGG	1 cut(s)	507
NdeII	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
NlaIII	CATG	4 cut(s)	497, 1072, 1858, 1952
NlaIV	GGNNCC	1 cut(s)	822
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	6 cut(s)	937, 1042, 1252, 1672, 1777, 2032
PciSI	GCTCTTC	1 cut(s)	1629
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 321, 524
PctI	GAATGC	1 cut(s)	1412
PdmI	GAANNNNTTC	1 cut(s)	1655
PfeI	GAWTC	3 cut(s)	1090, 1848, 1987
PflFI	GACNNNGTC	1 cut(s)	1134
PflMI	CCANNNNNTGG	1 cut(s)	2240
PkrI	GCNGC	4 cut(s)	145, 387, 658, 1805
PleI	GAGTC	2 cut(s)	374, 2097
PpsI	GAGTC	2 cut(s)	374, 2097
Ppu21I	YACGTR	2 cut(s)	627, 732
PshBI	ATTAAT	1 cut(s)	852
PspN4I	GGNNCC	1 cut(s)	822
PstI	CTGCAG	1 cut(s)	390
PsyI	GACNNNGTC	1 cut(s)	1134
RsaI	GTAC	3 cut(s)	1320, 1369, 1994
RsaNI	GTAC	3 cut(s)	1319, 1368, 1993
RseI	CAYNNNNRTG	1 cut(s)	1560
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	1629
SaqAI	TTAA	8 cut(s)	468, 477, 852, 1193, 1701, 1821, 2052, 2196
SatI	GCNGC	4 cut(s)	144, 386, 657, 1804
Sau3AI	GATC	6 cut(s)	797, 1059, 1522, 1584, 1879, 1899
ScaI	AGTACT	1 cut(s)	1369
SchI	GAGTC	2 cut(s)	374, 2098
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	9 cut(s)	526, 739, 769, 1107, 1402, 1447, 1564, 2122, 2176
SfcI	CTRYAG	2 cut(s)	386, 1678
SgrDI	CGTCGACG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	1560
SmlI	CTYRAG	3 cut(s)	89, 899, 1742
SmoI	CTYRAG	3 cut(s)	89, 899, 1742
SnaBI	TACGTA	2 cut(s)	627, 732
SpeI	ACTAGT	2 cut(s)	887, 1507
SsiI	CCGC	9 cut(s)	40, 144, 235, 283, 303, 317, 410, 656, 659
SspMI	CTAG	3 cut(s)	552, 888, 1508
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	2 cut(s)	2203, 2217
TaaI	ACNGT	6 cut(s)	340, 1208, 1682, 1897, 2032, 2038
TaiI	ACGT	5 cut(s)	327, 629, 734, 1154, 1941
TaqI	TCGA	6 cut(s)	174, 342, 417, 800, 865, 1093
TatI	WGTACW	3 cut(s)	1318, 1367, 1992
TauI	GCSGC	2 cut(s)	146, 659
TfiI	GAWTC	3 cut(s)	1090, 1848, 1987
Tru1I	TTAA	8 cut(s)	468, 477, 852, 1193, 1701, 1821, 2052, 2196
Tru9I	TTAA	8 cut(s)	468, 477, 852, 1193, 1701, 1821, 2052, 2196
TseFI	GTSAC	6 cut(s)	937, 1042, 1252, 1672, 1777, 2032
TseI	GCWGC	2 cut(s)	385, 1803
Tsp45I	GTSAC	6 cut(s)	937, 1042, 1252, 1672, 1777, 2032
Tth111I	GACNNNGTC	1 cut(s)	1134
Van91I	CCANNNNNTGG	1 cut(s)	2240
VspI	ATTAAT	1 cut(s)	852
XagI	CCTNNNNNAGG	2 cut(s)	317, 1841
XapI	RAATTY	5 cut(s)	448, 664, 1084, 1565, 1817
XbaI	TCTAGA	1 cut(s)	551
XmiI	GTMKAC	3 cut(s)	342, 623, 1154
XmnI	GAANNNNTTC	1 cut(s)	1655
XspI	CTAG	3 cut(s)	552, 888, 1508
ZraI	GACGTC	1 cut(s)	325
ZrmI	AGTACT	1 cut(s)	1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.