Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034932.1

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

1431 .. 2273

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034932.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggagatggtggagaagggtatatcacccgatgctgttacctattcatcactaattcaaggtgtctgtcagcaagggagactagttgacgcttgtgatctgttccaagaaatgataagtgtgggtttgcatcctgatgaattcacatacacaaccttgatcaatgcttactgcaaggaaggggatttgaataaggctcttcagttgaatgatgaaatgataaagaaaggtttcctacctgatgttgtgacctacagtgtgctgatcaatggacttaacaaacaagctcggacaagagaagcaaagaagcttctactgaagttgttctatgataactctgtcccagatgatgtcacatacaatactctaatagagagctgcacaaatgttgaatttaagagtgtggtagcccttgtaaagggattctgcatgaagggtttgatgaaagaagcagatcaagtttttgaaacagtgataaagaggaaatacaaacctaatggagcagtttatgacgttatcatacatggtcattgtagggaaggaaatgttcaggaggcattgaatctgtacaaggaaatgttgctttctggttttcttcctcatactgtgactgttattgcactgattaaagaacttttcactgagggaatgaacaatgaactgagtcaagtcatagtgaacactctgaggagctgtgagcttactgatgctgagcttgcaaagctgcttgttgaaacaaatcataaagaaggaaatttggatgcagtttttaatgtccttggtgaaatggccaaggatggtctccttccaaatagtggagcaagcgcttgtgcaggggggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

280

Amino Acids

30.91

Weight (kDa)

5.07

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	815
AcoI	YGGCCR	1 cut(s)	789
AcsI	RAATTY	3 cut(s)	140, 392, 754
AcuI	CTGAAG	2 cut(s)	185, 338
AfaI	GTAC	1 cut(s)	569
AfeI	AGCGCT	1 cut(s)	826
AfiI	CCNNNNNNNGG	2 cut(s)	418, 815
AgsI	TTSAA	7 cut(s)	59, 190, 208, 392, 467, 562, 734
AhlI	ACTAGT	1 cut(s)	82
AluBI	AGCT	7 cut(s)	287, 310, 378, 693, 700, 715, 724
AluI	AGCT	7 cut(s)	287, 310, 378, 693, 700, 715, 724
Alw26I	GTCTC	2 cut(s)	73, 806
Aor51HI	AGCGCT	1 cut(s)	826
AoxI	GGCC	1 cut(s)	789
ApeKI	GCWGC	2 cut(s)	378, 724
ApoI	RAATTY	3 cut(s)	140, 392, 754
Asp700I	GAANNNNTTC	2 cut(s)	230, 323
AspLEI	GCGC	1 cut(s)	827
AsuHPI	GGTGA	2 cut(s)	18, 794
BalI	TGGCCA	1 cut(s)	791
BbvI	GCAGC	2 cut(s)	365, 711
BccI	CCATC	1 cut(s)	791
BclI	TGATCA	2 cut(s)	159, 264
BcoDI	GTCTC	2 cut(s)	73, 806
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	828
BisI	GCNGC	2 cut(s)	379, 725
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	2 cut(s)	380, 726
BmsI	GCATC	4 cut(s)	22, 139, 697, 751
Bpu1102I	GCTNAGC	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	2 cut(s)	778, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 815
BseDI	CCNNGG	2 cut(s)	778, 792
BseGI	GGATG	3 cut(s)	130, 766, 802
BseLI	CCNNNNNNNGG	2 cut(s)	418, 815
BseMII	CTCAG	4 cut(s)	633, 653, 677, 702
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	2 cut(s)	365, 711
BsgI	GTGCAG	1 cut(s)	364
BshFI	GGCC	1 cut(s)	791
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	418, 815
BsmAI	GTCTC	2 cut(s)	73, 806
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	791
Bso31I	GGTCTC	1 cut(s)	806
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	4 cut(s)	97, 159, 264, 454
Bsp1720I	GCTNAGC	1 cut(s)	711
BspANI	GGCC	1 cut(s)	791
BspCNI	CTCAG	4 cut(s)	634, 654, 678, 703
BspQI	GCTCTTC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	806
BsrGI	TGTACA	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	778, 792
BssMI	GATC	4 cut(s)	97, 159, 264, 454
BssT1I	CCWWGG	2 cut(s)	778, 792
Bst4CI	ACNGT	4 cut(s)	257, 472, 607, 613
Bst6I	CTCTTC	1 cut(s)	204
BstAUI	TGTACA	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	717, 823
BstDEI	CTNAG	4 cut(s)	642, 662, 686, 711
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstF5I	GGATG	3 cut(s)	130, 766, 802
BstH2I	RGCGCY	1 cut(s)	828
BstHHI	GCGC	1 cut(s)	827
BstKTI	GATC	4 cut(s)	100, 162, 267, 457
BstMAI	GTCTC	2 cut(s)	73, 806
BstMBI	GATC	4 cut(s)	97, 159, 264, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	716, 721
BstSFI	CTRYAG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	365, 711
BsuRI	GGCC	1 cut(s)	791
BtsCI	GGATG	3 cut(s)	130, 766, 802
BtsIMutI	CAGTG	4 cut(s)	262, 477, 620, 639
Cac8I	GCNNGC	2 cut(s)	717, 823
CfoI	GCGC	1 cut(s)	827
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	2 cut(s)	430, 524
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	4 cut(s)	642, 662, 686, 711
DpnI	GATC	4 cut(s)	99, 161, 266, 456
DpnII	GATC	4 cut(s)	97, 159, 264, 454
EaeI	YGGCCR	1 cut(s)	789
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	778, 792
Eco31I	GGTCTC	1 cut(s)	806
Eco47III	AGCGCT	1 cut(s)	826
Eco57I	CTGAAG	2 cut(s)	185, 338
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	140
EcoT14I	CCWWGG	2 cut(s)	778, 792
ErhI	CCWWGG	2 cut(s)	778, 792
FaeI	CATG	2 cut(s)	433, 527
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	2 cut(s)	429, 523
FbaI	TGATCA	2 cut(s)	159, 264
Fnu4HI	GCNGC	2 cut(s)	379, 725
FokI	GGATG	3 cut(s)	117, 773, 809
Fsp4HI	GCNGC	2 cut(s)	379, 725
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	826
GluI	GCNGC	2 cut(s)	379, 725
HaeII	RGCGCY	1 cut(s)	828
HaeIII	GGCC	1 cut(s)	791
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	827
Hin1II	CATG	2 cut(s)	433, 527
Hin6I	GCGC	1 cut(s)	825
HinP1I	GCGC	1 cut(s)	825
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	3 cut(s)	423, 562, 664
HphI	GGTGA	2 cut(s)	18, 794
Hpy166II	GTNNAC	2 cut(s)	88, 679
Hpy188I	TCNGA	2 cut(s)	291, 687
Hpy188III	TCNNGA	2 cut(s)	134, 551
Hpy8I	GTNNAC	2 cut(s)	88, 679
HpyAV	CCTTC	6 cut(s)	10, 173, 427, 533, 743, 815
HpyCH4III	ACNGT	4 cut(s)	257, 472, 607, 613
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	8 cut(s)	130, 174, 381, 429, 620, 719, 764, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	716, 721
HpyF3I	CTNAG	4 cut(s)	642, 662, 686, 711
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	2 cut(s)	433, 527
HspAI	GCGC	1 cut(s)	825
Ksp22I	TGATCA	2 cut(s)	159, 264
Kzo9I	GATC	4 cut(s)	97, 159, 264, 454
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	3 cut(s)	500, 690, 818
LpnPI	CCDG	6 cut(s)	147, 252, 357, 536, 573, 819
Lsp1109I	GCAGC	2 cut(s)	365, 711
LweI	GCATC	4 cut(s)	22, 139, 697, 751
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	4 cut(s)	37, 247, 352, 607
MalI	GATC	4 cut(s)	99, 161, 266, 456
MboI	GATC	4 cut(s)	97, 159, 264, 454
MboII	GAAGA	2 cut(s)	191, 587
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	4 cut(s)	54, 140, 392, 754
MluNI	TGGCCA	1 cut(s)	791
MlyI	GAGTC	1 cut(s)	673
MnlI	CCTC	5 cut(s)	474, 547, 609, 637, 681
Mox20I	TGGCCA	1 cut(s)	791
MroXI	GAANNNNTTC	2 cut(s)	230, 323
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	4 cut(s)	276, 396, 627, 771
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	791
MwoI	GCNNNNNNNGC	2 cut(s)	716, 721
NdeII	GATC	4 cut(s)	97, 159, 264, 454
NlaIII	CATG	2 cut(s)	433, 527
NmuCI	GTSAC	3 cut(s)	247, 352, 607
PciSI	GCTCTTC	1 cut(s)	204
PdmI	GAANNNNTTC	2 cut(s)	230, 323
PfeI	GAWTC	2 cut(s)	423, 562
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	2 cut(s)	380, 726
PleI	GAGTC	1 cut(s)	672
PpsI	GAGTC	1 cut(s)	672
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	4 cut(s)	276, 396, 627, 771
SatI	GCNGC	2 cut(s)	379, 725
Sau3AI	GATC	4 cut(s)	97, 159, 264, 454
SchI	GAGTC	1 cut(s)	673
SfaNI	GCATC	4 cut(s)	22, 139, 697, 751
SfcI	CTRYAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	135
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	4 cut(s)	54, 140, 392, 754
SspMI	CTAG	1 cut(s)	83
StyI	CCWWGG	2 cut(s)	778, 792
TaaI	ACNGT	4 cut(s)	257, 472, 607, 613
TaiI	ACGT	1 cut(s)	516
TasI	AATT	4 cut(s)	54, 140, 392, 754
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	2 cut(s)	423, 562
Tru1I	TTAA	4 cut(s)	276, 396, 627, 771
Tru9I	TTAA	4 cut(s)	276, 396, 627, 771
TscAI	CASTG	4 cut(s)	262, 477, 627, 646
TseFI	GTSAC	3 cut(s)	247, 352, 607
TseI	GCWGC	2 cut(s)	378, 724
Tsp45I	GTSAC	3 cut(s)	247, 352, 607
TspDTI	ATGAA	7 cut(s)	36, 153, 228, 446, 458, 665, 672
TspRI	CASTG	4 cut(s)	262, 477, 627, 646
Van91I	CCANNNNNTGG	1 cut(s)	815
XagI	CCTNNNNNAGG	1 cut(s)	416
XapI	RAATTY	3 cut(s)	140, 392, 754
XmnI	GAANNNNTTC	2 cut(s)	230, 323
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.