MD11G1226000.v1.1

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004866
Physical Location & Seq
Reverse (-)
32999050 .. 32999552
503 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1226000.v1.1.491

Sequence Viewer

Length: 312 bp
ATGGAAGAAGTAATAATCGCAGCTAAAGCTGCAAACGCACATGACTTCATCGTTAAGTTACCAGACAGATATGAAACTCAAGCTGGTCAATCTGGATTCCAACTGTCTGGTGGGCAAAAGCAGCGAATTGCCATTGCGCGTGCTCTGCTTAGGGATCCTAAAATCCTGCTTCTTGATGAGGCAACTAGTGCACTGGATGCGCAGTCCGAAAGAGTAGTGCAGGAGGCAACTGATCAGGCATCAAAAGGGAGGACAACAATCATCATTGCCCACCGCCTGTCTACAATCCGAACAGCAGACTTGATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

104

Amino Acids

11.22

Weight (kDa)

6.73

Isoelectric Point (pI)

25.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 18 - 63 2.5e-12 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 201
AccI GTMKAC 1 cut(s) 281
AccII CGCG 1 cut(s) 139
AciI CCGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 149, 162
AhlI ACTAGT 1 cut(s) 185
AluBI AGCT 3 cut(s) 23, 29, 83
AluI AGCT 3 cut(s) 23, 29, 83
Alw21I GWGCWC 2 cut(s) 145, 193
Alw44I GTGCAC 1 cut(s) 189
AlwI GGATC 2 cut(s) 149, 162
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 3 cut(s) 20, 29, 121
AspLEI GCGC 2 cut(s) 139, 202
BaeGI GKGCMC 1 cut(s) 193
BamHI GGATCC 1 cut(s) 154
Bbv12I GWGCWC 2 cut(s) 145, 193
BbvI GCAGC 3 cut(s) 16, 32, 133
BclI TGATCA 1 cut(s) 232
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 1 cut(s) 186
BisI GCNGC 3 cut(s) 21, 30, 122
BlsI GCNGC 3 cut(s) 22, 31, 123
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 2 cut(s) 187, 248
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 2 cut(s) 132, 264
BseGI GGATG 1 cut(s) 202
BseMI GCAATG 2 cut(s) 132, 264
BseNI ACTGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 3 cut(s) 16, 32, 133
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 145, 193
Bsp1286I GDGCHC 2 cut(s) 145, 193
Bsp143I GATC 2 cut(s) 154, 232
BspACI CCGC 1 cut(s) 274
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 2 cut(s) 149, 162
BsrDI GCAATG 2 cut(s) 132, 264
BsrI ACTGG 1 cut(s) 198
BssMI GATC 2 cut(s) 154, 232
Bst4CI ACNGT 1 cut(s) 105
BstAPI GCANNNNNTGC 2 cut(s) 188, 197
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 2 cut(s) 139, 202
BstKTI GATC 2 cut(s) 157, 235
BstMBI GATC 2 cut(s) 154, 232
BstMWI GCNNNNNNNGC 7 cut(s) 26, 29, 35, 121, 145, 188, 197
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 16, 32, 133
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 1 cut(s) 154
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 2 cut(s) 139, 202
CviAII CATG 1 cut(s) 41
CviJI RGCY 3 cut(s) 23, 29, 83
CviKI_1 RGCY 3 cut(s) 23, 29, 83
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 156, 234
DpnII GATC 2 cut(s) 154, 232
FaeI CATG 1 cut(s) 44
FaiI YATR 2 cut(s) 42, 72
FatI CATG 1 cut(s) 40
FbaI TGATCA 1 cut(s) 232
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 3 cut(s) 21, 30, 122
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 21, 30, 122
FspBI CTAG 1 cut(s) 186
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 2 cut(s) 138, 201
GluI GCNGC 3 cut(s) 21, 30, 122
HhaI GCGC 2 cut(s) 139, 202
Hin1II CATG 1 cut(s) 44
Hin6I GCGC 2 cut(s) 137, 200
HinP1I GCGC 2 cut(s) 137, 200
HinfI GANTC 1 cut(s) 96
Hpy166II GTNNAC 2 cut(s) 191, 282
Hpy188I TCNGA 2 cut(s) 208, 290
Hpy188III TCNNGA 2 cut(s) 93, 173
Hpy8I GTNNAC 2 cut(s) 191, 282
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 32, 191, 220
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 29, 35, 121, 145, 188, 197
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 44
HspAI GCGC 2 cut(s) 137, 200
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 154, 232
LpnPI CCDG 9 cut(s) 69, 75, 78, 93, 179, 179, 206, 221, 290
Lsp1109I GCAGC 3 cut(s) 16, 32, 133
LweI GCATC 2 cut(s) 187, 248
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 57
MalI GATC 2 cut(s) 156, 234
MboI GATC 2 cut(s) 154, 232
MboII GAAGA 1 cut(s) 17
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 145, 193
MluCI AATT 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 3 cut(s) 172, 217, 243
MseI TTAA 1 cut(s) 54
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 7 cut(s) 26, 29, 35, 121, 145, 188, 197
NdeII GATC 2 cut(s) 154, 232
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 156
NsbI TGCGCA 1 cut(s) 201
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 3 cut(s) 22, 31, 123
PspN4I GGNNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 154
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 3 cut(s) 21, 30, 122
Sau3AI GATC 2 cut(s) 154, 232
SduI GDGCHC 2 cut(s) 145, 193
SetI ASST 3 cut(s) 25, 31, 85
SfaNI GCATC 2 cut(s) 187, 248
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 1 cut(s) 126
SsiI CCGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 105
TasI AATT 1 cut(s) 126
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 198
TseI GCWGC 3 cut(s) 20, 29, 121
TspDTI ATGAA 2 cut(s) 37, 87
TspRI CASTG 1 cut(s) 198
VneI GTGCAC 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.