Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Forward (+)

54104014 .. 54105339

Gene Structure 1326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG318000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGGAGCACAGGAGGCTTCCTTTGGTATGCAGATGAGATCGACAAGCTGCTGCTGTTGTTAGGCACTTTGGGTAGTGTTGGGGATGGTGCAATGACCCCAATCACCCCATGGTCCCCATTAACTATGGTAATCCTCGGCAGGTGGATGAATGATTATGGATCATCTTCTCCTTCTAATGAGACTGTAGACAAGGGAGTGATGATAGGGAGCATGGGAATATTTAATGCTACTTGGGCTTTCCCGGGTTGGATTGGTAGCATACTTGTCATTGAGAAAGAAGAGAAAGGAGGCACTGTCGTTGTTGCTAGTTTCTGCATCGTCTGGAAGGACTGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

113

Amino Acids

12.09

Weight (kDa)

4.34

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	169
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	49, 52
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	245, 246
AsuHPI	GGTGA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	36, 39
BccI	CCATC	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	245, 246
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	2 cut(s)	50, 53
BlsI	GCNGC	2 cut(s)	51, 54
Bme1390I	CCNGG	2 cut(s)	245, 246
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	245, 246
BmsI	GCATC	1 cut(s)	327
BpuMI	CCSGG	2 cut(s)	245, 246
BsaJI	CCNNGG	3 cut(s)	110, 136, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	110, 136, 244
BseGI	GGATG	2 cut(s)	91, 153
BseMI	GCAATG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	36, 39
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	39, 161
Bsp19I	CCATGG	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	3 cut(s)	110, 136, 244
BssMI	GATC	2 cut(s)	39, 161
BssT1I	CCWWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	187, 298, 335
Bst6I	CTCTTC	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	91, 153
BstKTI	GATC	2 cut(s)	42, 164
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	39, 161
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 236
BstSCI	CCNGG	2 cut(s)	243, 244
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	36, 39
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	91, 153
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	114
Cfr9I	CCCGGG	1 cut(s)	244
CviAII	CATG	2 cut(s)	111, 214
CviJI	RGCY	3 cut(s)	18, 49, 239
CviKI_1	RGCY	3 cut(s)	18, 49, 239
DpnI	GATC	2 cut(s)	41, 163
DpnII	GATC	2 cut(s)	39, 161
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	114, 217
FaiI	YATR	7 cut(s)	30, 112, 128, 159, 215, 263, 340
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	2 cut(s)	110, 213
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	50, 53
FokI	GGATG	2 cut(s)	98, 160
Fsp4HI	GCNGC	2 cut(s)	50, 53
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	50, 53
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	2 cut(s)	114, 217
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	183, 322
HpyCH4III	ACNGT	3 cut(s)	187, 298, 335
HpyCH4V	TGCA	3 cut(s)	32, 92, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 236
Hsp92II	CATG	2 cut(s)	114, 217
Kzo9I	GATC	2 cut(s)	39, 161
LmnI	GCTCC	2 cut(s)	6, 210
LpnPI	CCDG	3 cut(s)	127, 258, 310
Lsp1109I	GCAGC	2 cut(s)	36, 39
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	309
MalI	GATC	2 cut(s)	41, 163
MboI	GATC	2 cut(s)	39, 161
MboII	GAAGA	2 cut(s)	159, 293
MhlI	GDGCHC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	3 cut(s)	8, 146, 284
MseI	TTAA	2 cut(s)	122, 225
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	245, 246
MwoI	GCNNNNNNNGC	2 cut(s)	15, 236
NciI	CCSGG	2 cut(s)	245, 246
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	39, 161
NlaIII	CATG	2 cut(s)	114, 217
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	117
PaqCI	CACCTGC	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	51, 54
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	122, 225
SatI	GCNGC	2 cut(s)	50, 53
Sau3AI	GATC	2 cut(s)	39, 161
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	245, 246
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	2 cut(s)	51, 146
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	114
SmaI	CCCGGG	1 cut(s)	246
SspI	AATATT	1 cut(s)	222
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	243, 244
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	3 cut(s)	187, 298, 335
TaqI	TCGA	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	122, 225
Tru9I	TTAA	2 cut(s)	122, 225
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	49, 52
TspDTI	ATGAA	1 cut(s)	164
TspMI	CCCGGG	1 cut(s)	244
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmaI	CCCGGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.