MD11G1226100.v1.1

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004866
Physical Location & Seq
Reverse (-)
32999811 .. 33001368
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1226100.v1.1.491

Sequence Viewer

Length: 1080 bp
ATGGGGCTCAAAAAAAGCATGTTTCGATACGCCGATGGCACCAATAAGTTGTTGATGTTCTTCGGGACGTTAGGCAGCATCGGTGACGGGTTGCTGAACCCTCTCATGATTTATGTTCTTAGTGAGGTTATTAATTCTTATGGCAAGAGTCAGGTGACAAATGCAGATGTGGACAAGTTTGCACTCAGGTTATTCTATGTTGCAATTGGAGTTGGATTAGCAGCATTTGTTGAAGTTTTATGTTGGACACGAACAGCGGAGAGACAGACTTCTAAAATGGGAATTGAATATCTGAAATCTGTTCTTAGACGAGAAGTTTCCTTCTTTGACACTCAGACTGCTAGTTCTTCAACAACATTCCAAGTTATCTCAATCATCTCCTCCGATGCCACTGCAGTCCAAGTTTCCTTGTGCAAGAAGATACCTGACTGCTTGACTTACATGTCAACTTTCTTTTTCTGCCATATTTTTGCCTTCAAGCTGTCATGGAGGCTGACGTTGGCAGCTATGCCGATTTCAGTCATGATCATGGCTCCGGGACTTGTATTCGGAAAGATCCTGATCGGGTTGGTAATGAAAGGGATTGAAGCTTATGGAGTAGCTGGGGGACTTGCTGAACAAGCAATTTCTTCAGTAAGAACCGTGTACTCATACGTTGGAGAGAACCAAACACTAAATAGGTTCAGCACTGCACTTCAGACAGTTACTGAACTTGGAATAAAGGTAGGTTTGGTAAAGGGATTGCTGATGGGAAGCATGGGAATCATCTATATCGGTTGGGGTTTTCAGGCTTGGGTCGGGACTTATTTGGTTACTCAGAAAGGCGAAGATGGCGGGCATGTTTTTGTAGCCGGTTCCAATGTCCTCATGGGAGGCATGAGTATTTTAAGTGCACTCCCAAACCTAACTGCCATCACCGAGGCATTAGCAGCTACAACTCGAATCCTTGAAATGATTGATCGTGTTCCTAGTATTGACACTGAAGATAAAAAACGGAAGGCTTTGTCACATGTCAGAGGAGAAACAGAATTCCAAGACATTTATTTCAATTACCCGTTGAGACCTGATACCACGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

360

Amino Acids

39.25

Weight (kDa)

8.74

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 19 - 291 3.5e-38 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 2 cut(s) 257, 834
AclWI GGATC 1 cut(s) 550
AcsI RAATTY 1 cut(s) 1028
AcuI CTGAAG 3 cut(s) 615, 680, 1002
AfaI GTAC 1 cut(s) 647
AflIII ACRYGT 2 cut(s) 441, 1009
AgsI TTSAA 7 cut(s) 233, 287, 351, 478, 587, 950, 1048
AluBI AGCT 5 cut(s) 481, 506, 590, 602, 932
AluI AGCT 5 cut(s) 481, 506, 590, 602, 932
Alw21I GWGCWC 1 cut(s) 895
Alw26I GTCTC 2 cut(s) 256, 1054
Alw44I GTGCAC 1 cut(s) 891
AlwI GGATC 1 cut(s) 550
AlwNI CAGNNNCTG 1 cut(s) 707
ApaLI GTGCAC 1 cut(s) 891
ApeKI GCWGC 4 cut(s) 75, 221, 503, 929
ApoI RAATTY 1 cut(s) 1028
AseI ATTAAT 1 cut(s) 132
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 3 cut(s) 95, 166, 907
BaeGI GKGCMC 1 cut(s) 895
BaeI ACNNNNGTAYC 1 cut(s) 1059
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 895
BbvI GCAGC 4 cut(s) 87, 233, 515, 941
BccI CCATC 4 cut(s) 29, 742, 824, 920
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BclI TGATCA 1 cut(s) 525
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 2 cut(s) 256, 1054
BfaI CTAG 2 cut(s) 342, 969
BfmI CTRYAG 1 cut(s) 393
BisI GCNGC 4 cut(s) 76, 222, 504, 930
BlsI GCNGC 4 cut(s) 77, 223, 505, 931
Bme1390I CCNGG 1 cut(s) 537
BmiI GGNNCC 3 cut(s) 40, 534, 856
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 2 cut(s) 87, 376
BpuMI CCSGG 1 cut(s) 537
BsaBI GATNNNNATC 1 cut(s) 560
BsaI GGTCTC 1 cut(s) 1054
BsaJI CCNNGG 2 cut(s) 918, 1071
Bse118I RCCGGY 1 cut(s) 851
Bse8I GATNNNNATC 1 cut(s) 560
BseDI CCNNGG 2 cut(s) 918, 1071
BseJI GATNNNNATC 1 cut(s) 560
BseMII CTCAG 3 cut(s) 199, 347, 830
BseRI GAGGAG 2 cut(s) 370, 1032
BseSI GKGCMC 1 cut(s) 895
BseXI GCAGC 4 cut(s) 87, 233, 515, 941
BseYI CCCAGC 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 675
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 895
BsiSI CCGG 2 cut(s) 536, 852
BslFI GGGAC 4 cut(s) 79, 552, 621, 814
BsmAI GTCTC 2 cut(s) 256, 1054
BsmFI GGGAC 4 cut(s) 79, 552, 621, 814
Bso31I GGTCTC 1 cut(s) 1054
Bsp1286I GDGCHC 2 cut(s) 9, 895
Bsp143I GATC 4 cut(s) 525, 555, 561, 958
BspACI CCGC 2 cut(s) 257, 834
BspCNI CTCAG 3 cut(s) 198, 346, 829
BspHI TCATGA 2 cut(s) 105, 522
BspLI GGNNCC 3 cut(s) 40, 534, 856
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 1 cut(s) 550
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 1054
BsrFI RCCGGY 1 cut(s) 851
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 2 cut(s) 918, 1071
BssMI GATC 4 cut(s) 525, 555, 561, 958
Bst4CI ACNGT 3 cut(s) 643, 703, 1075
BstC8I GCNNGC 1 cut(s) 836
BstDEI CTNAG 5 cut(s) 119, 185, 305, 333, 816
BstDSI CCRYGG 1 cut(s) 1071
BstKTI GATC 4 cut(s) 528, 558, 564, 961
BstMAI GTCTC 2 cut(s) 256, 1054
BstMBI GATC 4 cut(s) 525, 555, 561, 958
BstMWI GCNNNNNNNGC 3 cut(s) 620, 831, 929
BstNSI RCATGY 4 cut(s) 22, 445, 842, 1013
BstSCI CCNGG 1 cut(s) 535
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 895
BstV1I GCAGC 4 cut(s) 87, 233, 515, 941
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 1071
BtsI GCAGTG 2 cut(s) 390, 687
BtsIMutI CAGTG 3 cut(s) 390, 687, 978
Cac8I GCNNGC 1 cut(s) 836
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 2 cut(s) 105, 522
Cfr10I RCCGGY 1 cut(s) 851
Csp6I GTAC 1 cut(s) 646
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 5 cut(s) 119, 185, 305, 333, 816
DpnI GATC 4 cut(s) 527, 557, 563, 960
DpnII GATC 4 cut(s) 525, 555, 561, 958
DrdI GACNNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 1054
Eco57I CTGAAG 3 cut(s) 615, 680, 1002
EcoRI GAATTC 1 cut(s) 1028
EcoT38I GRGCYC 1 cut(s) 9
FaqI GGGAC 4 cut(s) 79, 552, 621, 814
FauI CCCGC 1 cut(s) 827
FbaI TGATCA 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 76, 222, 504, 930
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 4 cut(s) 76, 222, 504, 930
FspBI CTAG 2 cut(s) 342, 969
GluI GCNGC 4 cut(s) 76, 222, 504, 930
GsaI CCCAGC 1 cut(s) 606
HapII CCGG 2 cut(s) 536, 852
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 3 cut(s) 148, 762, 942
HpaII CCGG 2 cut(s) 536, 852
HphI GGTGA 3 cut(s) 95, 166, 907
Hpy166II GTNNAC 4 cut(s) 172, 447, 646, 893
Hpy188I TCNGA 8 cut(s) 294, 336, 385, 551, 699, 819, 1016, 1079
Hpy188III TCNNGA 5 cut(s) 64, 106, 523, 559, 799
Hpy8I GTNNAC 4 cut(s) 172, 447, 646, 893
HpyAV CCTTC 3 cut(s) 331, 484, 991
HpyCH4III ACNGT 3 cut(s) 643, 703, 1075
HpyCH4IV ACGT 3 cut(s) 68, 497, 654
HpyCH4V TGCA 7 cut(s) 164, 182, 203, 395, 414, 692, 893
HpyF10VI GCNNNNNNNGC 3 cut(s) 620, 831, 929
HpyF3I CTNAG 5 cut(s) 119, 185, 305, 333, 816
HpySE526I ACGT 3 cut(s) 68, 497, 654
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 4 cut(s) 525, 555, 561, 958
LmnI GCTCC 1 cut(s) 538
LpnPI CCDG 8 cut(s) 137, 172, 438, 549, 572, 588, 773, 865
Lsp1109I GCAGC 4 cut(s) 87, 233, 515, 941
LweI GCATC 2 cut(s) 87, 376
MaeI CTAG 2 cut(s) 342, 969
MaeII ACGT 3 cut(s) 68, 497, 654
MaeIII GTNAC 5 cut(s) 83, 154, 703, 811, 1005
MalI GATC 4 cut(s) 527, 557, 563, 960
MboI GATC 4 cut(s) 525, 555, 561, 958
MboII GAAGA 6 cut(s) 52, 339, 430, 621, 839, 995
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 2 cut(s) 9, 895
MluCI AATT 6 cut(s) 133, 204, 282, 624, 1028, 1048
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 3 cut(s) 193, 224, 637
MnlI CCTC 8 cut(s) 111, 118, 391, 483, 866, 875, 913, 1010
MseI TTAA 2 cut(s) 132, 887
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 2 cut(s) 536, 852
MspR9I CCNGG 1 cut(s) 537
MunI CAATTG 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 620, 831, 929
NciI CCSGG 1 cut(s) 537
NdeII GATC 4 cut(s) 525, 555, 561, 958
NlaIV GGNNCC 3 cut(s) 40, 534, 856
NmuCI GTSAC 3 cut(s) 83, 154, 1005
NspI RCATGY 4 cut(s) 22, 445, 842, 1013
PagI TCATGA 2 cut(s) 105, 522
PciI ACATGT 2 cut(s) 441, 1009
PfeI GAWTC 2 cut(s) 762, 942
PfoI TCCNGGA 1 cut(s) 535
PkrI GCNGC 4 cut(s) 77, 223, 505, 931
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PscI ACATGT 2 cut(s) 441, 1009
PshBI ATTAAT 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 602
PspN4I GGNNCC 3 cut(s) 40, 534, 856
PstI CTGCAG 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 1 cut(s) 555
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 2 cut(s) 132, 887
SatI GCNGC 4 cut(s) 76, 222, 504, 930
Sau3AI GATC 4 cut(s) 525, 555, 561, 958
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 2 cut(s) 9, 895
SfaNI GCATC 2 cut(s) 87, 376
SfcI CTRYAG 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 527
Sse9I AATT 6 cut(s) 133, 204, 282, 624, 1028, 1048
SsiI CCGC 2 cut(s) 257, 834
SspMI CTAG 2 cut(s) 342, 969
StyD4I CCNGG 1 cut(s) 535
TaaI ACNGT 3 cut(s) 643, 703, 1075
TaiI ACGT 3 cut(s) 71, 500, 657
TaqI TCGA 2 cut(s) 25, 940
TasI AATT 6 cut(s) 133, 204, 282, 624, 1028, 1048
TatI WGTACW 1 cut(s) 645
TfiI GAWTC 2 cut(s) 762, 942
Tru1I TTAA 2 cut(s) 132, 887
Tru9I TTAA 2 cut(s) 132, 887
TscAI CASTG 3 cut(s) 397, 694, 985
TseFI GTSAC 3 cut(s) 83, 154, 1005
TseI GCWGC 4 cut(s) 75, 221, 503, 929
Tsp45I GTSAC 3 cut(s) 83, 154, 1005
TspDTI ATGAA 1 cut(s) 590
TspGWI ACGGA 1 cut(s) 1009
TspRI CASTG 3 cut(s) 397, 694, 985
VneI GTGCAC 1 cut(s) 891
VspI ATTAAT 1 cut(s) 132
XapI RAATTY 1 cut(s) 1028
XceI RCATGY 4 cut(s) 22, 445, 842, 1013
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XspI CTAG 2 cut(s) 342, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.