Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Forward (+)

54105347 .. 54106671

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG318100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGTGCACTCCCAAATCTGTCTTTCATCATGGATGTGACATCTGTTGCTATTTGGGTGTTTGAAATGATTGAAAGAGATCCTGCCATAGACACTATGAAAAGAGGAAAAGTATTGGGACATTTGAAAGGAAAAGTGGAGTTTAAAGAGGTGCACTTTAGTTACCCATCAAGACCTGATACCCCAGTTCTTGAAGGACTCAATCTTACCATAAGAGCTGGAAAGACTGTCGGTTTTGTTGGAGCAATGCATAAGATCAACCTGGAAAAACAGCCCAGCCGGCCAATTCAGCTCGGTACATTCCACAATTTTTTCCATCAGCATGGCAGACTATTCTTCCCAAATGCACCCTCTTGGTTACTACAACTATCAAAACAAAGACAAAATTATCCTCCCCTATCTCAATGGCGCTTATATCGAATGAATGCACCTGAGTGGAAGCAAGCCTTACTTGGTTGTTCGGTTTCTGATGGCTACGGAGCTATATGCAGGCAATTCAAGCCTATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

170

Amino Acids

19.41

Weight (kDa)

9.85

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	281
AfaI	GTAC	1 cut(s)	298
AgsI	TTSAA	5 cut(s)	65, 74, 127, 194, 499
AjnI	CCWGG	1 cut(s)	261
AleI	CACNNNNGTG	1 cut(s)	433
AluBI	AGCT	3 cut(s)	218, 292, 482
AluI	AGCT	3 cut(s)	218, 292, 482
Alw21I	GWGCWC	2 cut(s)	10, 156
Alw44I	GTGCAC	2 cut(s)	6, 152
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	281
ApaLI	GTGCAC	2 cut(s)	6, 152
AspLEI	GCGC	1 cut(s)	411
BaeGI	GKGCMC	2 cut(s)	10, 156
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
Bbv12I	GWGCWC	2 cut(s)	10, 156
BccI	CCATC	3 cut(s)	175, 324, 464
BciT130I	CCWGG	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	412
BglI	GCCNNNNNGGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	185
BseSI	GKGCMC	2 cut(s)	10, 156
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	2 cut(s)	10, 156
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	10, 156
Bsp143I	GATC	2 cut(s)	79, 255
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	424
BspPI	GGATC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	279
BssMI	GATC	2 cut(s)	79, 255
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	281, 444, 491
BstDEI	CTNAG	1 cut(s)	432
BstF5I	GGATG	1 cut(s)	40
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	2 cut(s)	82, 258
BstMBI	GATC	2 cut(s)	79, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 289, 499
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSLI	GKGCMC	2 cut(s)	10, 156
BstX2I	RGATCY	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	281, 444, 491
CfoI	GCGC	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	31, 323
CviJI	RGCY	9 cut(s)	218, 274, 279, 283, 292, 446, 474, 482, 502
CviKI_1	RGCY	9 cut(s)	218, 274, 279, 283, 292, 446, 474, 482, 502
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	81, 257
DpnII	GATC	2 cut(s)	79, 255
DraI	TTTAAA	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	252
FaeI	CATG	2 cut(s)	34, 326
FaiI	YATR	9 cut(s)	32, 89, 98, 212, 252, 324, 415, 485, 487
FalI	AAGNNNNNCTT	4 cut(s)	431, 463, 435, 467
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	30, 322
FokI	GGATG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	410
GsaI	CCCAGC	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	34, 326
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	8, 154
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	2 cut(s)	171, 191
Hpy8I	GTNNAC	2 cut(s)	8, 154
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	6 cut(s)	8, 154, 250, 347, 428, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 289, 499
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	34, 326
HspAI	GCGC	1 cut(s)	409
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	79, 255
LmnI	GCTCC	2 cut(s)	242, 479
MaeIII	GTNAC	3 cut(s)	37, 161, 357
MalI	GATC	2 cut(s)	81, 257
MboI	GATC	2 cut(s)	79, 255
MboII	GAAGA	1 cut(s)	328
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	2 cut(s)	10, 156
MluCI	AATT	4 cut(s)	285, 307, 385, 494
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	4 cut(s)	98, 142, 361, 402
Mph1103I	ATGCAT	1 cut(s)	252
MroNI	GCCGGC	1 cut(s)	279
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	3 cut(s)	35, 321, 433
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	280, 289, 499
NaeI	GCCGGC	1 cut(s)	281
NdeII	GATC	2 cut(s)	79, 255
NgoMIV	GCCGGC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	34, 326
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	433
PctI	GAATGC	1 cut(s)	430
PdiI	GCCGGC	1 cut(s)	281
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	3 cut(s)	35, 321, 433
SaqAI	TTAA	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	79, 255
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	10, 156
SetI	ASST	7 cut(s)	153, 178, 220, 264, 294, 433, 484
SmiMI	CAYNNNNRTG	3 cut(s)	35, 321, 433
Sse9I	AATT	4 cut(s)	285, 307, 385, 494
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	418
TasI	AATT	4 cut(s)	285, 307, 385, 494
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	16, 113, 437
TspGWI	ACGGA	1 cut(s)	492
VneI	GTGCAC	2 cut(s)	6, 152
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.