Rh5DG267300

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004866
Physical Location & Seq
Forward (+)
32341837 .. 32346381
4545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG267300.1

Sequence Viewer

Length: 1170 bp
ATGCTATGCTGCAAAGTCTTGAATCATTTCATCAACAAACTCAATTCCATCAGCTCATTCCTCCTTTCATCTTTGGATGAAAGAGACCCTCGTACTGCATCTTTGCTGCTAAGTGCTAACAGCAGCAGCTTGATTTTCAGTTGGCTGACAATGGCATGGCTCCTTATAACTGCAATATCAGATGGCACAGACAAGTTGCTGATGCTTTTTGGGACTCTAGGCAGCATTGGTGATGGGTTGCAGAACCCTCTCATGATGTTCATTCTTAGTGAGGTGATCAACTCATATGGAAGTTCCAGTGGCGCTTTGACTAATGCTGATGTAGACAAGTTTGCACTCAGGCTATTCTATGTTGCTATTGGAGTTGGACTTGCTGCATTTGTTGAAGGGTTATGTTGGACAAGGACCGCGGAGAGGCAGACTTCGAGAATGAGAATGAAGTATCTTAATTCTGTTCTCAAACAAGAAGTTTCCTTCTTTGACACCCAAACTGCTGGTTCTTCAACAACCTTCCAAGTTATTTCAATCATCTCCTCCGATGCCAATGCAGTGCAAGTTGCTTTATGCGAGAAGATACCTGACTGCATAGCATACATGTCAACTTTCTTCTTCTGCCATATATTTGCCTTCACACTTTCATGGAGGTTGGCCTTGGCTGCGATGCCACTTTCAATCTCATTCATAGCTCCCGGGCTTTTCTTTGGAAGTATATTGATGGGCCTTGTAATGAAGGGGATTGGGGCTTATGGAGTTGCCGGAGGGATTGCTGAACAAGCAATTTCTTCAGTAAGAACTGTATATTCATATGTTGGGGAGAACCAAACACTAAAGAGGTTCAGCTTTGCACTTCAGACTGTTACGAAAATTGGAATCAAGGTGGGTCTTGTGAAAGGAATCCTGATGGGAAGCATGGGGATCATTTACGTAGGTTGGGGTTTTCAGGCATGGGTTGGGACTTATTTGGTTACTCAAAAAGGAGAAGATGGAGGGCATGTCTTCGTAGCCGGTTTCAATGTCCTCATGGGAGGCCTGAGTATTTTAAGTGCACTTCCAAATTTAACTGCCATCACAGAGGCATTAGCTGCTACAACACGAATTCTTGAAATGATTGACCGTGTTCCTAGTATTGAAACCGAAGACAGAAAGGGGAAGGCTTTGTCACATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

389

Amino Acids

42.0

Weight (kDa)

8.11

Isoelectric Point (pI)

25.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 68 - 342 3.7e-40 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 410
AciI CCGC 2 cut(s) 408, 410
AclWI GGATC 1 cut(s) 923
AcsI RAATTY 2 cut(s) 1054, 1095
AcuI CTGAAG 2 cut(s) 768, 833
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 414
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 8 cut(s) 22, 386, 504, 525, 672, 1012, 1103, 1130
AluBI AGCT 5 cut(s) 54, 129, 686, 840, 1082
AluI AGCT 5 cut(s) 54, 129, 686, 840, 1082
Alw21I GWGCWC 1 cut(s) 1048
Alw26I GTCTC 1 cut(s) 78
Alw44I GTGCAC 1 cut(s) 1044
AlwI GGATC 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 3 cut(s) 648, 718, 1027
ApaLI GTGCAC 1 cut(s) 1044
ApeKI GCWGC 8 cut(s) 9, 106, 123, 126, 222, 374, 656, 1082
ApoI RAATTY 2 cut(s) 1054, 1095
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 405, 718
AsuC2I CCSGG 2 cut(s) 690, 691
AsuHPI GGTGA 2 cut(s) 242, 286
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 1048
BbsI GAAGAC 2 cut(s) 988, 1143
Bbv12I GWGCWC 1 cut(s) 1048
BbvI GCAGC 7 cut(s) 93, 135, 138, 234, 361, 643, 1069
BccI CCATC 7 cut(s) 56, 176, 227, 709, 895, 977, 1073
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BclI TGATCA 1 cut(s) 276
BcnI CCSGG 2 cut(s) 690, 691
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 2 cut(s) 218, 1122
BfoI RGCGCY 1 cut(s) 306
BisI GCNGC 8 cut(s) 10, 107, 124, 127, 223, 375, 657, 1083
BlsI GCNGC 8 cut(s) 11, 108, 125, 128, 224, 376, 658, 1084
Bme1390I CCNGG 2 cut(s) 690, 691
Bme18I GGWCC 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 2 cut(s) 405, 718
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 690, 691
BmsI GCATC 4 cut(s) 107, 192, 529, 651
BpiI GAAGAC 2 cut(s) 988, 1143
BpuMI CCSGG 2 cut(s) 690, 691
BsaAI YACGTR 1 cut(s) 925
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 408, 651, 689
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse118I RCCGGY 1 cut(s) 1004
Bse1I ACTGG 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 408, 651, 689
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 352, 1022
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 523
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 7 cut(s) 93, 135, 138, 234, 361, 643, 1069
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 3 cut(s) 650, 720, 1029
BsiHKAI GWGCWC 1 cut(s) 1048
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 3 cut(s) 690, 756, 1005
BslFI GGGAC 2 cut(s) 226, 967
BslI CCNNNNNNNGG 1 cut(s) 414
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 226, 967
BsnI GGCC 3 cut(s) 650, 720, 1029
Bso31I GGTCTC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 1048
Bsp143I GATC 2 cut(s) 276, 915
BspACI CCGC 2 cut(s) 408, 410
BspANI GGCC 3 cut(s) 650, 720, 1029
BspCNI CTCAG 2 cut(s) 351, 1023
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 923
BspTNI GGTCTC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 1004
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 1004
BssECI CCNNGG 3 cut(s) 408, 651, 689
BssMI GATC 2 cut(s) 276, 915
BssT1I CCWWGG 1 cut(s) 651
Bst4CI ACNGT 3 cut(s) 796, 856, 1115
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstBAI YACGTR 1 cut(s) 925
BstDEI CTNAG 4 cut(s) 110, 266, 338, 1031
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 410
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 2 cut(s) 279, 918
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 276, 915
BstMWI GCNNNNNNNGC 3 cut(s) 656, 773, 1082
BstNSI RCATGY 2 cut(s) 598, 995
BstSCI CCNGG 2 cut(s) 688, 689
BstSLI GKGCMC 1 cut(s) 1048
BstSNI TACGTA 1 cut(s) 925
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 7 cut(s) 93, 135, 138, 234, 361, 643, 1069
BstV2I GAAGAC 2 cut(s) 988, 1143
BstXI CCANNNNNNTGG 1 cut(s) 494
BsuRI GGCC 3 cut(s) 650, 720, 1029
BtgI CCRYGG 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 674
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 2 cut(s) 304, 555
CciI TCATGA 1 cut(s) 252
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 1004
Cfr13I GGNCC 2 cut(s) 405, 718
Cfr42I CCGCGG 1 cut(s) 411
Cfr9I CCCGGG 1 cut(s) 689
Csp6I GTAC 1 cut(s) 93
CviAII CATG 8 cut(s) 156, 253, 595, 639, 910, 945, 992, 1021
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 4 cut(s) 110, 266, 338, 1031
DpnI GATC 2 cut(s) 278, 917
DpnII GATC 2 cut(s) 276, 915
Eco105I TACGTA 1 cut(s) 925
Eco130I CCWWGG 1 cut(s) 651
Eco147I AGGCCT 1 cut(s) 1029
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 405
Eco57I CTGAAG 2 cut(s) 768, 833
Eco88I CYCGRG 1 cut(s) 689
EcoRI GAATTC 1 cut(s) 1095
EcoT14I CCWWGG 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 8 cut(s) 159, 256, 598, 642, 913, 948, 995, 1024
FaqI GGGAC 2 cut(s) 226, 967
FatI CATG 8 cut(s) 155, 252, 594, 638, 909, 944, 991, 1020
FauNDI CATATG 2 cut(s) 286, 805
FbaI TGATCA 1 cut(s) 276
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 8 cut(s) 10, 107, 124, 127, 223, 375, 657, 1083
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 8 cut(s) 10, 107, 124, 127, 223, 375, 657, 1083
FspBI CTAG 2 cut(s) 218, 1122
GlaI GCGC 1 cut(s) 304
GluI GCNGC 8 cut(s) 10, 107, 124, 127, 223, 375, 657, 1083
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 3 cut(s) 650, 720, 1029
HapII CCGG 3 cut(s) 690, 756, 1005
HhaI GCGC 1 cut(s) 305
Hin1II CATG 8 cut(s) 159, 256, 598, 642, 913, 948, 995, 1024
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 4 cut(s) 22, 214, 870, 894
HpaII CCGG 3 cut(s) 690, 756, 1005
HphI GGTGA 2 cut(s) 242, 286
Hpy166II GTNNAC 3 cut(s) 325, 600, 1046
Hpy188I TCNGA 3 cut(s) 181, 538, 852
Hpy188III TCNNGA 5 cut(s) 19, 253, 426, 898, 1100
Hpy8I GTNNAC 3 cut(s) 325, 600, 1046
HpyAV CCTTC 6 cut(s) 380, 484, 520, 637, 724, 1144
HpyCH4III ACNGT 3 cut(s) 796, 856, 1115
HpyCH4IV ACGT 1 cut(s) 924
HpyF10VI GCNNNNNNNGC 3 cut(s) 656, 773, 1082
HpyF3I CTNAG 4 cut(s) 110, 266, 338, 1031
HpySE526I ACGT 1 cut(s) 924
Hsp92II CATG 8 cut(s) 159, 256, 598, 642, 913, 948, 995, 1024
HspAI GCGC 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 276
KspI CCGCGG 1 cut(s) 411
Kzo9I GATC 2 cut(s) 276, 915
LmnI GCTCC 2 cut(s) 165, 691
Lsp1109I GCAGC 7 cut(s) 93, 135, 138, 234, 361, 643, 1069
LweI GCATC 4 cut(s) 107, 192, 529, 651
MaeI CTAG 2 cut(s) 218, 1122
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 3 cut(s) 856, 964, 1158
MalI GATC 2 cut(s) 278, 917
MboI GATC 2 cut(s) 276, 915
MboII GAAGA 8 cut(s) 492, 583, 598, 601, 774, 988, 992, 1148
MhlI GDGCHC 1 cut(s) 1048
MluCI AATT 6 cut(s) 43, 448, 777, 864, 1054, 1095
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 2 cut(s) 346, 377
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 4 cut(s) 447, 1040, 1058, 1168
MslI CAYNNNNRTG 1 cut(s) 637
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 3 cut(s) 690, 756, 1005
MspR9I CCNGG 2 cut(s) 690, 691
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 3 cut(s) 656, 773, 1082
NciI CCSGG 2 cut(s) 690, 691
NdeI CATATG 2 cut(s) 286, 805
NdeII GATC 2 cut(s) 276, 915
NlaIII CATG 8 cut(s) 159, 256, 598, 642, 913, 948, 995, 1024
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 1158
NspI RCATGY 2 cut(s) 598, 995
PagI TCATGA 1 cut(s) 252
PceI AGGCCT 1 cut(s) 1029
PciI ACATGT 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 3 cut(s) 22, 870, 894
PkrI GCNGC 8 cut(s) 11, 108, 125, 128, 224, 376, 658, 1084
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 925
PscI ACATGT 1 cut(s) 594
PsiI TTATAA 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 405, 718
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 637
SacII CCGCGG 1 cut(s) 411
SaqAI TTAA 4 cut(s) 447, 1040, 1058, 1168
SatI GCNGC 8 cut(s) 10, 107, 124, 127, 223, 375, 657, 1083
Sau3AI GATC 2 cut(s) 276, 915
Sau96I GGNCC 2 cut(s) 405, 718
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 690, 691
SduI GDGCHC 1 cut(s) 1048
SfaNI GCATC 4 cut(s) 107, 192, 529, 651
Sfr303I CCGCGG 1 cut(s) 411
SgrBI CCGCGG 1 cut(s) 411
SinI GGWCC 1 cut(s) 405
SmaI CCCGGG 1 cut(s) 691
SmiMI CAYNNNNRTG 1 cut(s) 637
SnaBI TACGTA 1 cut(s) 925
Sse9I AATT 6 cut(s) 43, 448, 777, 864, 1054, 1095
SseBI AGGCCT 1 cut(s) 1029
SsiI CCGC 2 cut(s) 408, 410
SspMI CTAG 2 cut(s) 218, 1122
StuI AGGCCT 1 cut(s) 1029
StyD4I CCNGG 2 cut(s) 688, 689
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 3 cut(s) 796, 856, 1115
TaiI ACGT 1 cut(s) 927
TaqI TCGA 1 cut(s) 425
TasI AATT 6 cut(s) 43, 448, 777, 864, 1054, 1095
TfiI GAWTC 3 cut(s) 22, 870, 894
Tru1I TTAA 4 cut(s) 447, 1040, 1058, 1168
Tru9I TTAA 4 cut(s) 447, 1040, 1058, 1168
TscAI CASTG 2 cut(s) 304, 555
TseFI GTSAC 1 cut(s) 1158
TseI GCWGC 8 cut(s) 9, 106, 123, 126, 222, 374, 656, 1082
Tsp45I GTSAC 1 cut(s) 1158
TspDTI ATGAA 9 cut(s) 19, 57, 93, 250, 452, 627, 670, 743, 792
TspMI CCCGGG 1 cut(s) 689
TspRI CASTG 2 cut(s) 304, 555
VneI GTGCAC 1 cut(s) 1044
VpaK11BI GGWCC 1 cut(s) 405
XapI RAATTY 2 cut(s) 1054, 1095
XceI RCATGY 2 cut(s) 598, 995
XmaI CCCGGG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 218, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.