RchiOBHm_Chr4g0432461

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004866
Physical Location & Seq
Forward (+)
56652761 .. 56654666
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40107

Sequence Viewer

Length: 828 bp
ATGGGGAGCACAGGAGGCTTCCTTTGGTATGCAGATGAGATCGACAAGCTGCTGCTGTTGTTAGGCACTTTGGGTAGTGTTGGGGATGGTGCAATGACCCCAATCACCCCATGGTCCCCATTAACTATGGTAATCCTCGGCAGGTGGATGAATGATTATGGATCATCTTCTCCTTCTAATGAGACTGTAGACAAGGGAGTGATGATAGGGAGCATGGGAATATTTAATGCTACTTGGGCTTTCCCGGGTTGGATTGGTAGCATACTTGTCATTGAGAAAGAAGAGAAAGGAGGCACTGTCGTTGTTGCTAGTTTCTGCATCGTCTGGAAGGACTATCCTGCCATAGACACTATGAAAAGAGGAAAAGTATTGGGACATTTGAAAGGAAAAGTGGAGTTTAAAGAGGTGCACTTTAGTTACCCATCAAGACCTGATACCCCAGTTCTTGAAGGACTCAATCTTACCATAAGAGCTGGAAAGACTGTCGGTTTTGTTGGAGCAATGGTTCTAGAAACTCTACCACCATTTCATTACTTAAAAAGGGTTTGTGACACTGTCAAAGGAAAAATACTCCTTGATGGATATGATAAAAAGAGACTTCAGCTTAAGTGGTTCAGATCCCAGATGGGACTTGTTAGTCAAGAACTAGTTCTCTTTGCAACATCTATAAAAGAAAACATTATATTCGGAAAGGAAGGAGCTTCGATGGAAAATGTCACAGATGCAGCCAAGGCAGCAAATGCTCATGACTTCATTGTTAAACTATCCGAAGGATATGAAACTCAAGTAAGCCAATCACATTTTTCTCGCCCTAAATCCACAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

275

Amino Acids

30.22

Weight (kDa)

8.68

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 132
AasI GACNNNNNNGTC 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 189
AclWI GGATC 2 cut(s) 169, 612
AcuI CTGAAG 1 cut(s) 584
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 2 cut(s) 382, 449
AhlI ACTAGT 1 cut(s) 646
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
AluBI AGCT 4 cut(s) 49, 473, 604, 701
AluI AGCT 4 cut(s) 49, 473, 604, 701
Alw21I GWGCWC 2 cut(s) 11, 411
Alw26I GTCTC 2 cut(s) 176, 589
Alw44I GTGCAC 1 cut(s) 407
AlwI GGATC 2 cut(s) 169, 612
Ama87I CYCGRG 1 cut(s) 244
ApaLI GTGCAC 1 cut(s) 407
ApeKI GCWGC 4 cut(s) 49, 52, 725, 734
Asp700I GAANNNNTTC 1 cut(s) 648
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 2 cut(s) 245, 246
AsuHPI GGTGA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 411
BaeI ACNNNNGTAYC 2 cut(s) 426, 459
Bbv12I GWGCWC 2 cut(s) 11, 411
BbvI GCAGC 4 cut(s) 36, 39, 737, 746
BccI CCATC 5 cut(s) 80, 430, 572, 619, 700
BcnI CCSGG 2 cut(s) 245, 246
BcoDI GTCTC 2 cut(s) 176, 589
BcuI ACTAGT 1 cut(s) 646
BfaI CTAG 3 cut(s) 309, 509, 647
BfmI CTRYAG 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 605
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 4 cut(s) 50, 53, 726, 735
BlsI GCNGC 4 cut(s) 51, 54, 727, 736
Bme1390I CCNGG 2 cut(s) 245, 246
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 2 cut(s) 245, 246
BmrI ACTGGG 1 cut(s) 434
BmsI GCATC 2 cut(s) 327, 712
BmuI ACTGGG 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 768
BpuMI CCSGG 2 cut(s) 245, 246
BsaJI CCNNGG 4 cut(s) 110, 136, 244, 729
BsaXI ACNNNNNCTCC 4 cut(s) 282, 312, 489, 519
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 2 cut(s) 99, 507
BseDI CCNNGG 4 cut(s) 110, 136, 244, 729
BseGI GGATG 2 cut(s) 91, 153
BseMI GCAATG 2 cut(s) 99, 507
BseNI ACTGG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 4 cut(s) 36, 39, 737, 746
BsiHKAI GWGCWC 2 cut(s) 11, 411
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 3 cut(s) 100, 387, 642
BsmAI GTCTC 2 cut(s) 176, 589
BsmFI GGGAC 3 cut(s) 100, 387, 642
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 11, 411
Bsp143I GATC 3 cut(s) 39, 161, 617
Bsp19I CCATGG 1 cut(s) 110
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 1 cut(s) 116
BspMI ACCTGC 1 cut(s) 132
BspPI GGATC 2 cut(s) 169, 612
BspTI CTTAAG 1 cut(s) 605
BsrDI GCAATG 2 cut(s) 99, 507
BsrI ACTGG 1 cut(s) 440
BssECI CCNNGG 4 cut(s) 110, 136, 244, 729
BssMI GATC 3 cut(s) 39, 161, 617
BssT1I CCWWGG 2 cut(s) 110, 729
Bst4CI ACNGT 4 cut(s) 187, 298, 484, 556
Bst6I CTCTTC 1 cut(s) 276
BstAFI CTTAAG 1 cut(s) 605
BstAPI GCANNNNNTGC 1 cut(s) 740
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 91, 153
BstKTI GATC 3 cut(s) 42, 164, 620
BstMAI GTCTC 2 cut(s) 176, 589
BstMBI GATC 3 cut(s) 39, 161, 617
BstMWI GCNNNNNNNGC 5 cut(s) 15, 236, 731, 734, 740
BstSCI CCNGG 2 cut(s) 243, 244
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 4 cut(s) 36, 39, 737, 746
BstX2I RGATCY 1 cut(s) 617
BstYI RGATCY 1 cut(s) 617
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 2 cut(s) 91, 153
BtsIMutI CAGTG 2 cut(s) 294, 552
BveI ACCTGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 745
Cfr13I GGNCC 1 cut(s) 114
Cfr9I CCCGGG 1 cut(s) 244
CviAII CATG 3 cut(s) 111, 214, 746
CviJI RGCY 8 cut(s) 18, 49, 239, 473, 604, 701, 728, 792
CviKI_1 RGCY 8 cut(s) 18, 49, 239, 473, 604, 701, 728, 792
DpnI GATC 3 cut(s) 41, 163, 619
DpnII GATC 3 cut(s) 39, 161, 617
DraI TTTAAA 1 cut(s) 400
DrdI GACNNNNNNGTC 1 cut(s) 636
DseDI GACNNNNNNGTC 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 2 cut(s) 110, 729
Eco47I GGWCC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 110, 729
ErhI CCWWGG 2 cut(s) 110, 729
FaeI CATG 3 cut(s) 114, 217, 749
FaqI GGGAC 3 cut(s) 100, 387, 642
FatI CATG 3 cut(s) 110, 213, 745
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 50, 53, 726, 735
FokI GGATG 2 cut(s) 98, 160
Fsp4HI GCNGC 4 cut(s) 50, 53, 726, 735
FspBI CTAG 3 cut(s) 309, 509, 647
GluI GCNGC 4 cut(s) 50, 53, 726, 735
HapII CCGG 1 cut(s) 245
Hin1II CATG 3 cut(s) 114, 217, 749
HinfI GANTC 1 cut(s) 453
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 2 cut(s) 190, 409
Hpy188I TCNGA 3 cut(s) 617, 689, 769
Hpy188III TCNNGA 6 cut(s) 325, 426, 446, 509, 641, 746
Hpy8I GTNNAC 2 cut(s) 190, 409
HpyAV CCTTC 5 cut(s) 183, 322, 443, 689, 764
HpyCH4III ACNGT 4 cut(s) 187, 298, 484, 556
HpyCH4V TGCA 6 cut(s) 32, 92, 318, 409, 659, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 236, 731, 734, 740
Hsp92II CATG 3 cut(s) 114, 217, 749
Kzo9I GATC 3 cut(s) 39, 161, 617
LmnI GCTCC 4 cut(s) 6, 210, 497, 698
LpnPI CCDG 8 cut(s) 127, 258, 310, 351, 444, 453, 459, 635
Lsp1109I GCAGC 4 cut(s) 36, 39, 737, 746
LweI GCATC 2 cut(s) 327, 712
MaeI CTAG 3 cut(s) 309, 509, 647
MaeIII GTNAC 3 cut(s) 416, 548, 715
MalI GATC 3 cut(s) 41, 163, 619
MboI GATC 3 cut(s) 39, 161, 617
MboII GAAGA 2 cut(s) 159, 293
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 2 cut(s) 11, 411
MlyI GAGTC 1 cut(s) 447
MmeI TCCRAC 2 cut(s) 230, 475
MnlI CCTC 5 cut(s) 8, 146, 284, 353, 397
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 6 cut(s) 122, 225, 399, 536, 606, 759
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 245, 246
MwoI GCNNNNNNNGC 5 cut(s) 15, 236, 731, 734, 740
NciI CCSGG 2 cut(s) 245, 246
NcoI CCATGG 1 cut(s) 110
NdeII GATC 3 cut(s) 39, 161, 617
NlaIII CATG 3 cut(s) 114, 217, 749
NlaIV GGNNCC 1 cut(s) 116
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 2 cut(s) 548, 715
PagI TCATGA 1 cut(s) 745
PaqCI CACCTGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 648
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 4 cut(s) 51, 54, 727, 736
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 617
PsyI GACNNNGTC 1 cut(s) 554
SaqAI TTAA 6 cut(s) 122, 225, 399, 536, 606, 759
SatI GCNGC 4 cut(s) 50, 53, 726, 735
Sau3AI GATC 3 cut(s) 39, 161, 617
Sau96I GGNCC 1 cut(s) 114
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 2 cut(s) 245, 246
SduI GDGCHC 2 cut(s) 11, 411
SetI ASST 7 cut(s) 51, 146, 408, 433, 475, 606, 703
SfaNI GCATC 2 cut(s) 327, 712
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 114
SmaI CCCGGG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 605, 783
SmoI CTYRAG 2 cut(s) 605, 783
SpeI ACTAGT 1 cut(s) 646
SspI AATATT 1 cut(s) 222
SspMI CTAG 3 cut(s) 309, 509, 647
StyD4I CCNGG 2 cut(s) 243, 244
StyI CCWWGG 2 cut(s) 110, 729
TaaI ACNGT 4 cut(s) 187, 298, 484, 556
TaqI TCGA 2 cut(s) 42, 704
Tru1I TTAA 6 cut(s) 122, 225, 399, 536, 606, 759
Tru9I TTAA 6 cut(s) 122, 225, 399, 536, 606, 759
TscAI CASTG 2 cut(s) 301, 559
TseFI GTSAC 2 cut(s) 548, 715
TseI GCWGC 4 cut(s) 49, 52, 725, 734
Tsp45I GTSAC 2 cut(s) 548, 715
TspDTI ATGAA 5 cut(s) 164, 368, 518, 742, 792
TspMI CCCGGG 1 cut(s) 244
TspRI CASTG 2 cut(s) 301, 559
Tth111I GACNNNGTC 1 cut(s) 554
Vha464I CTTAAG 1 cut(s) 605
VneI GTGCAC 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
XmaI CCCGGG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 3 cut(s) 309, 509, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.