Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Reverse (-)

27286231 .. 27288309

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028741

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAACCAGGATCTCAAGGCAATTACTGGGTTCCAAGCCTTTTCGGCTAAATCGGGCTCTGATGTGGACTCGGCCTCTATGGCTCGGACTCAGCTCATCAAAAATTCCTCTGATGCCTTGGGTAAAATTCGATTTGAGAGCCTTACTGACAAGAGCAAGCTAGATGCTCAACCCGAGCTTTTTATCAGGTTTGTACCTGATAAGACCAACAACACCCTCTCCATCATTGATAGCGGTATTGGCATGACTAAACCAGGGGCCTCAATGTTGTGGTTTTGTTTTGAGGGGACTATAACAAATTGCACCTTCTATGAATACAAATCTGGATACATCCATCACCGTCATGTTGATGGCCTAGAGTATGCTGAGTCCCTATTTCCTAGACCTGTTCCAAGAAGGAATTTGGGCAGTGAATTTCTCCAGATCATGTTCAGATATCTTCTCCTGCCCCTGCACCAGTACCTTCTAAACCCAGTATCATCCCTTGGTCTAGCACCTTCATGGATTGCACAAGGTGATAAAGTCCTTCCATTCGGAGACTTTGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

184

Amino Acids

20.51

Weight (kDa)

7.77

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	4 cut(s)	103, 126, 400, 413
AdeI	CACNNNGTG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	195, 461
AjnI	CCWGG	2 cut(s)	6, 253
AluBI	AGCT	3 cut(s)	94, 160, 178
AluI	AGCT	3 cut(s)	94, 160, 178
Alw26I	GTCTC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	3 cut(s)	72, 258, 352
ApoI	RAATTY	4 cut(s)	103, 126, 400, 413
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	329, 527
AvaI	CYCGRG	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	59
BccI	CCATC	3 cut(s)	230, 342, 344
BciT130I	CCWGG	2 cut(s)	8, 255
BciVI	GTATCC	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	4 cut(s)	161, 356, 381, 491
BfuI	GTATCC	1 cut(s)	320
BglI	GCCNNNNNGGC	2 cut(s)	44, 80
Bme1390I	CCNGG	2 cut(s)	8, 255
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	32, 259
BmrFI	CCNGG	2 cut(s)	8, 255
BmrI	ACTGGG	2 cut(s)	36, 467
BmsI	GCATC	2 cut(s)	103, 154
BmuI	ACTGGG	2 cut(s)	36, 467
BpmI	CTGGAG	1 cut(s)	404
BsaJI	CCNNGG	3 cut(s)	117, 254, 484
BsaXI	ACNNNNNCTCC	3 cut(s)	203, 233, 528
Bse1I	ACTGG	3 cut(s)	31, 457, 473
BseBI	CCWGG	2 cut(s)	8, 255
BseDI	CCNNGG	3 cut(s)	117, 254, 484
BseGI	GGATG	2 cut(s)	330, 479
BseMII	CTCAG	2 cut(s)	104, 357
BseNI	ACTGG	3 cut(s)	31, 457, 473
BsgI	GTGCAG	1 cut(s)	437
BshFI	GGCC	3 cut(s)	74, 260, 354
BsiHKCI	CYCGRG	1 cut(s)	173
BslFI	GGGAC	2 cut(s)	301, 355
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	2 cut(s)	301, 355
BsnI	GGCC	3 cut(s)	74, 260, 354
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	10, 423
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	3 cut(s)	74, 260, 354
BspCNI	CTCAG	2 cut(s)	103, 358
BspLI	GGNNCC	2 cut(s)	32, 259
BspPI	GGATC	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	31, 457, 473
BssECI	CCNNGG	3 cut(s)	117, 254, 484
BssMI	GATC	2 cut(s)	10, 423
BssT1I	CCWWGG	2 cut(s)	117, 484
Bst2UI	CCWGG	2 cut(s)	8, 255
Bst4CI	ACNGT	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	90, 366
BstF5I	GGATG	2 cut(s)	330, 479
BstKTI	GATC	2 cut(s)	13, 426
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	2 cut(s)	10, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 80, 240
BstNI	CCWGG	2 cut(s)	8, 255
BstSCI	CCNGG	2 cut(s)	6, 253
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	3 cut(s)	74, 260, 354
BtsCI	GGATG	2 cut(s)	330, 479
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	194, 460
CviAII	CATG	4 cut(s)	244, 344, 427, 501
CviQI	GTAC	2 cut(s)	194, 460
DdeI	CTNAG	2 cut(s)	90, 366
DpnI	GATC	2 cut(s)	12, 425
DpnII	GATC	2 cut(s)	10, 423
DraIII	CACNNNGTG	1 cut(s)	515
Eco130I	CCWWGG	2 cut(s)	117, 484
Eco24I	GRGCYC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	6, 253
EcoRV	GATATC	1 cut(s)	437
EcoT14I	CCWWGG	2 cut(s)	117, 484
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	2 cut(s)	117, 484
FaeI	CATG	4 cut(s)	247, 347, 430, 504
FaiI	YATR	8 cut(s)	80, 245, 293, 312, 345, 363, 428, 502
FaqI	GGGAC	2 cut(s)	301, 355
FatI	CATG	4 cut(s)	243, 343, 426, 500
FokI	GGATG	2 cut(s)	317, 466
FriOI	GRGCYC	1 cut(s)	59
FspBI	CTAG	4 cut(s)	161, 356, 381, 491
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	74, 260, 354
Hin1II	CATG	4 cut(s)	247, 347, 430, 504
HinfI	GANTC	3 cut(s)	68, 88, 368
HphI	GGTGA	2 cut(s)	329, 527
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	5 cut(s)	61, 87, 112, 434, 536
Hpy188III	TCNNGA	2 cut(s)	324, 421
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	5 cut(s)	316, 390, 473, 507, 536
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	303, 454, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 80, 240
HpyF3I	CTNAG	2 cut(s)	90, 366
Hsp92II	CATG	4 cut(s)	247, 347, 430, 504
Kzo9I	GATC	2 cut(s)	10, 423
LweI	GCATC	2 cut(s)	103, 154
MaeI	CTAG	4 cut(s)	161, 356, 381, 491
MalI	GATC	2 cut(s)	12, 425
MboI	GATC	2 cut(s)	10, 423
MboII	GAAGA	1 cut(s)	431
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	6 cut(s)	21, 103, 126, 298, 400, 413
MlyI	GAGTC	3 cut(s)	62, 82, 377
MnlI	CCTC	5 cut(s)	85, 118, 227, 271, 277
MslI	CAYNNNNRTG	3 cut(s)	342, 348, 499
MspR9I	CCNGG	2 cut(s)	8, 255
MvaI	CCWGG	2 cut(s)	8, 255
MwoI	GCNNNNNNNGC	3 cut(s)	44, 80, 240
NdeII	GATC	2 cut(s)	10, 423
NlaIII	CATG	4 cut(s)	247, 347, 430, 504
NlaIV	GGNNCC	2 cut(s)	32, 259
NmeAIII	GCCGAG	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	542
PleI	GAGTC	3 cut(s)	62, 82, 376
PpsI	GAGTC	3 cut(s)	62, 82, 376
Psp6I	CCWGG	2 cut(s)	6, 253
PspGI	CCWGG	2 cut(s)	6, 253
PspN4I	GGNNCC	2 cut(s)	32, 259
PspPI	GGNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	10
PsyI	GACNNNGTC	1 cut(s)	542
RsaI	GTAC	2 cut(s)	195, 461
RsaNI	GTAC	2 cut(s)	194, 460
RseI	CAYNNNNRTG	3 cut(s)	342, 348, 499
Sau3AI	GATC	2 cut(s)	10, 423
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	3 cut(s)	62, 82, 377
ScrFI	CCNGG	2 cut(s)	8, 255
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	2 cut(s)	103, 154
SmiMI	CAYNNNNRTG	3 cut(s)	342, 348, 499
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	21, 103, 126, 298, 400, 413
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	4 cut(s)	161, 356, 381, 491
StyD4I	CCNGG	2 cut(s)	6, 253
StyI	CCWWGG	2 cut(s)	117, 484
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	130
TasI	AATT	6 cut(s)	21, 103, 126, 298, 400, 413
TscAI	CASTG	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	17, 327, 489
TspRI	CASTG	1 cut(s)	415
Tth111I	GACNNNGTC	1 cut(s)	542
XapI	RAATTY	4 cut(s)	103, 126, 400, 413
XspI	CTAG	4 cut(s)	161, 356, 381, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.