Rmu_sc0001084.1_g000008

Multidrug resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001084.1
OG0004866
Physical Location & Seq
Reverse (-)
41603 .. 42898
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001084.1_g000008.1.cds

Sequence Viewer

Length: 897 bp
atgcgaactgaatacttaaaattcagtgttgctcattacaaaagtatggagcttgttattaagcaaggtttcataaagggagtgatgatagggagcatgggaattgttaatgctacttgggctttcccgggttggattggtagcatacttgtcattgagaaaggagagaaaggaggcactgtcgttgttgctagtatctgcatcgtctggaaggaccgtaagtacctttccttgtccataatgagtgcactcccaaatctgtctttcatcatgggggtgacatctgttgctatttgggtgtttgaaatgattgaaagagatcctgccatagacactatgagaagaggaaaagtattgggacatttgaaaggaaaagtggagtttaaagaggtgcactttagttacccatcaagacctgataccccagttcttgaaggactcaatcttaccgtaagagttggaaaggctgtcggaaaaatactccttgatggatatgataaaaagagacttcagcttaagtggttcagatcccagaagggacttgttagtcaagaactagttctctttgcaacatctataaaagaaaacattctattcggaaaggaaggagcttcgatggaaaatgtcacagatgcagccaaggcagcaaatgctcatgacttcattgttaaactatccgaaggatatgaaactcaattgtctggagggcaaaagcaaagggttgctatagcaaggcctctcgttagaaatcccgtaatccttctgcttgacgaagccacaagcgctttcaatgcacaatccaaaagagtagtacaagaagcccaggacgtggcttcagtaggacgtacaactccattgttgcccatcggctttccacaatatgcaaagctgagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

298

Amino Acids

32.89

Weight (kDa)

9.66

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 546
AccB7I CCANNNNNTGG 1 cut(s) 829
AclWI GGATC 2 cut(s) 314, 522
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 2 cut(s) 494, 819
AfaI GTAC 3 cut(s) 224, 813, 847
AfeI AGCGCT 1 cut(s) 784
AfiI CCNNNNNNNGG 1 cut(s) 829
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 5 cut(s) 305, 314, 367, 434, 790
AhlI ACTAGT 1 cut(s) 556
AjiI CACGTC 1 cut(s) 829
AjnI CCWGG 1 cut(s) 822
AluBI AGCT 4 cut(s) 52, 514, 611, 889
AluI AGCT 4 cut(s) 52, 514, 611, 889
Alw21I GWGCWC 2 cut(s) 250, 396
Alw26I GTCTC 1 cut(s) 499
Alw44I GTGCAC 2 cut(s) 246, 392
AlwI GGATC 2 cut(s) 314, 522
Ama87I CYCGRG 1 cut(s) 127
Aor51HI AGCGCT 1 cut(s) 784
AoxI GGCC 1 cut(s) 734
ApaLI GTGCAC 2 cut(s) 246, 392
ApeKI GCWGC 2 cut(s) 635, 644
ApoI RAATTY 1 cut(s) 20
Asp700I GAANNNNTTC 2 cut(s) 558, 588
AspLEI GCGC 1 cut(s) 785
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 2 cut(s) 128, 129
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 2 cut(s) 250, 396
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
Bbv12I GWGCWC 2 cut(s) 250, 396
BbvI GCAGC 2 cut(s) 647, 656
BccI CCATC 4 cut(s) 415, 482, 610, 872
BciT130I CCWGG 1 cut(s) 824
BcnI CCSGG 2 cut(s) 128, 129
BcoDI GTCTC 1 cut(s) 499
BcuI ACTAGT 1 cut(s) 556
BfaI CTAG 2 cut(s) 192, 557
BfmI CTRYAG 1 cut(s) 726
BfoI RGCGCY 1 cut(s) 786
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 2 cut(s) 636, 645
BlsI GCNGC 2 cut(s) 637, 646
Bme1390I CCNGG 3 cut(s) 128, 129, 824
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 829
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 3 cut(s) 128, 129, 824
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 210, 622
BmuI ACTGGG 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 723
BpuMI CCSGG 2 cut(s) 128, 129
BsaJI CCNNGG 3 cut(s) 127, 639, 822
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 829
Bse1I ACTGG 1 cut(s) 425
BseBI CCWGG 1 cut(s) 824
BseDI CCNNGG 3 cut(s) 127, 639, 822
BseLI CCNNNNNNNGG 1 cut(s) 829
BseMII CTCAG 1 cut(s) 881
BseNI ACTGG 1 cut(s) 425
BseSI GKGCMC 2 cut(s) 250, 396
BseXI GCAGC 2 cut(s) 647, 656
BshFI GGCC 1 cut(s) 736
BsiHKAI GWGCWC 2 cut(s) 250, 396
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 2 cut(s) 372, 552
BslI CCNNNNNNNGG 1 cut(s) 829
BsmAI GTCTC 1 cut(s) 499
BsmFI GGGAC 2 cut(s) 372, 552
BsnI GGCC 1 cut(s) 736
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 250, 396
Bsp143I GATC 2 cut(s) 319, 527
BspANI GGCC 1 cut(s) 736
BspCNI CTCAG 1 cut(s) 882
BspHI TCATGA 1 cut(s) 655
BspPI GGATC 2 cut(s) 314, 522
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 3 cut(s) 127, 639, 822
BssMI GATC 2 cut(s) 319, 527
BssT1I CCWWGG 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 824
Bst4CI ACNGT 3 cut(s) 181, 218, 451
Bst6I CTCTTC 1 cut(s) 337
BstAFI CTTAAG 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 650
BstDEI CTNAG 1 cut(s) 890
BstH2I RGCGCY 1 cut(s) 786
BstHHI GCGC 1 cut(s) 785
BstKTI GATC 2 cut(s) 322, 530
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 2 cut(s) 319, 527
BstMWI GCNNNNNNNGC 6 cut(s) 119, 641, 644, 650, 782, 791
BstNI CCWGG 1 cut(s) 824
BstSCI CCNGG 3 cut(s) 126, 127, 822
BstSFI CTRYAG 1 cut(s) 726
BstSLI GKGCMC 2 cut(s) 250, 396
BstV1I GCAGC 2 cut(s) 647, 656
BstX2I RGATCY 2 cut(s) 319, 527
BstYI RGATCY 2 cut(s) 319, 527
BsuRI GGCC 1 cut(s) 736
BtrI CACGTC 1 cut(s) 829
BtsIMutI CAGTG 2 cut(s) 31, 177
CciI TCATGA 1 cut(s) 655
CfoI GCGC 1 cut(s) 785
Cfr13I GGNCC 1 cut(s) 214
Cfr9I CCCGGG 1 cut(s) 127
Csp6I GTAC 3 cut(s) 223, 812, 846
CviAII CATG 3 cut(s) 97, 271, 656
CviQI GTAC 3 cut(s) 223, 812, 846
DdeI CTNAG 1 cut(s) 890
DpnI GATC 2 cut(s) 321, 529
DpnII GATC 2 cut(s) 319, 527
DraI TTTAAA 1 cut(s) 385
DrdI GACNNNNNNGTC 1 cut(s) 546
DseDI GACNNNNNNGTC 1 cut(s) 546
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 639
Eco147I AGGCCT 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 214
Eco47III AGCGCT 1 cut(s) 784
Eco57I CTGAAG 2 cut(s) 494, 819
Eco88I CYCGRG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 822
EcoT14I CCWWGG 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 3 cut(s) 100, 274, 659
FaqI GGGAC 2 cut(s) 372, 552
FatI CATG 3 cut(s) 96, 270, 655
Fnu4HI GCNGC 2 cut(s) 636, 645
Fsp4HI GCNGC 2 cut(s) 636, 645
FspBI CTAG 2 cut(s) 192, 557
GlaI GCGC 1 cut(s) 784
GluI GCNGC 2 cut(s) 636, 645
GsuI CTGGAG 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 786
HaeIII GGCC 1 cut(s) 736
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 785
Hin1II CATG 3 cut(s) 100, 274, 659
Hin6I GCGC 1 cut(s) 783
HinP1I GCGC 1 cut(s) 783
HinfI GANTC 1 cut(s) 438
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 248, 394
Hpy188I TCNGA 4 cut(s) 473, 527, 599, 679
Hpy188III TCNNGA 6 cut(s) 208, 411, 431, 551, 656, 702
Hpy8I GTNNAC 2 cut(s) 248, 394
HpyAV CCTTC 6 cut(s) 205, 428, 529, 599, 674, 770
HpyCH4III ACNGT 3 cut(s) 181, 218, 451
HpyCH4IV ACGT 2 cut(s) 828, 844
HpyCH4V TGCA 7 cut(s) 201, 248, 394, 569, 635, 794, 884
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 641, 644, 650, 782, 791
HpyF3I CTNAG 1 cut(s) 890
HpySE526I ACGT 2 cut(s) 828, 844
Hsp92II CATG 3 cut(s) 100, 274, 659
HspAI GCGC 1 cut(s) 783
Kzo9I GATC 2 cut(s) 319, 527
LmnI GCTCC 3 cut(s) 49, 93, 608
LpnPI CCDG 9 cut(s) 141, 193, 336, 429, 438, 545, 687, 809, 836
Lsp1109I GCAGC 2 cut(s) 647, 656
LweI GCATC 2 cut(s) 210, 622
MaeI CTAG 2 cut(s) 192, 557
MaeII ACGT 2 cut(s) 828, 844
MaeIII GTNAC 3 cut(s) 277, 401, 625
MalI GATC 2 cut(s) 321, 529
MboI GATC 2 cut(s) 319, 527
MboII GAAGA 1 cut(s) 354
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 2 cut(s) 319, 527
MhlI GDGCHC 2 cut(s) 250, 396
MluCI AATT 3 cut(s) 20, 102, 695
MlyI GAGTC 1 cut(s) 432
MmeI TCCRAC 3 cut(s) 113, 439, 451
MnlI CCTC 5 cut(s) 167, 338, 382, 698, 747
MroXI GAANNNNTTC 2 cut(s) 558, 588
MseI TTAA 6 cut(s) 17, 60, 108, 384, 516, 669
MslI CAYNNNNRTG 1 cut(s) 275
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 3 cut(s) 128, 129, 824
MunI CAATTG 1 cut(s) 695
MvaI CCWGG 1 cut(s) 824
MwoI GCNNNNNNNGC 6 cut(s) 119, 641, 644, 650, 782, 791
NciI CCSGG 2 cut(s) 128, 129
NdeII GATC 2 cut(s) 319, 527
NlaIII CATG 3 cut(s) 100, 274, 659
NmuCI GTSAC 2 cut(s) 277, 625
PagI TCATGA 1 cut(s) 655
PceI AGGCCT 1 cut(s) 736
PdmI GAANNNNTTC 2 cut(s) 558, 588
PflMI CCANNNNNTGG 1 cut(s) 829
PkrI GCNGC 2 cut(s) 637, 646
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 822
PspGI CCWGG 1 cut(s) 822
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 2 cut(s) 319, 527
RsaI GTAC 3 cut(s) 224, 813, 847
RsaNI GTAC 3 cut(s) 223, 812, 846
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 6 cut(s) 17, 60, 108, 384, 516, 669
SatI GCNGC 2 cut(s) 636, 645
Sau3AI GATC 2 cut(s) 319, 527
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 3 cut(s) 128, 129, 824
SduI GDGCHC 2 cut(s) 250, 396
SfaNI GCATC 2 cut(s) 210, 622
SfcI CTRYAG 1 cut(s) 726
SinI GGWCC 1 cut(s) 214
SmaI CCCGGG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SpeI ACTAGT 1 cut(s) 556
Sse9I AATT 3 cut(s) 20, 102, 695
SseBI AGGCCT 1 cut(s) 736
SspMI CTAG 2 cut(s) 192, 557
StuI AGGCCT 1 cut(s) 736
StyD4I CCNGG 3 cut(s) 126, 127, 822
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 3 cut(s) 181, 218, 451
TaiI ACGT 2 cut(s) 831, 847
TaqI TCGA 1 cut(s) 614
TasI AATT 3 cut(s) 20, 102, 695
TatI WGTACW 1 cut(s) 811
Tru1I TTAA 6 cut(s) 17, 60, 108, 384, 516, 669
Tru9I TTAA 6 cut(s) 17, 60, 108, 384, 516, 669
TscAI CASTG 2 cut(s) 31, 184
TseFI GTSAC 2 cut(s) 277, 625
TseI GCWGC 2 cut(s) 635, 644
Tsp45I GTSAC 2 cut(s) 277, 625
TspDTI ATGAA 4 cut(s) 61, 256, 652, 702
TspMI CCCGGG 1 cut(s) 127
TspRI CASTG 2 cut(s) 31, 184
Van91I CCANNNNNTGG 1 cut(s) 829
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 2 cut(s) 246, 392
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 20
XmaI CCCGGG 1 cut(s) 127
XmnI GAANNNNTTC 2 cut(s) 558, 588
XspI CTAG 2 cut(s) 192, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.