Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Reverse (-)

21649415 .. 21651828

Gene Structure 2414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG128600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCTTTTCGGCTAAATCGGGGTTTGAGGTGGAGGACTCGTGGCCCGGACTCAGCTCATCAGCAATTCCTCTGCGAAAAGCTCATCAGCAATTCCTCTGATGCTTTGGGTAAAATTCGATTTGAGAGCCTTATTGACAAGGGCAAGCTAGATGCTCAACCCGAGCTTTTTATCAGGATTGTGCCTGATAAGACCAACAACACCCTCTCTACCGTTGATGGTGGTATTCGCATGACTAAAGCTGAGATTGCTAAATTCTCCAAGCTAGACGTTGATACTTATCCAAGATATGAGAATCAGCTAGAGAAGTTCTATTACACCTTCTATGAATACAAATCTGGATACATCCATCGCCGTCATGTTGATGGCCTAGAGTATGTTGAGTCCCTATTTCCTAGACCTATTCCAAGAAGGAATTTGGGCAGTGAATTTCTCCAGATCATGTTCAGATATCTTCTCCTGCCCCTGCACCAGTACCTTTTCAACCTAGTATCATCCCTTGGTCTGGCACCTTCATGGATTGCACAAGGTGATAAAGTCCTTACATTCGGAGACTTTGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

188

Amino Acids

21.96

Weight (kDa)

9.38

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AcsI	RAATTY	4 cut(s)	114, 254, 415, 428
AdeI	CACNNNGTG	1 cut(s)	530
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	1 cut(s)	484
AluBI	AGCT	7 cut(s)	56, 82, 148, 166, 242, 265, 301
AluI	AGCT	7 cut(s)	56, 82, 148, 166, 242, 265, 301
Alw26I	GTCTC	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	2 cut(s)	43, 367
ApoI	RAATTY	4 cut(s)	114, 254, 415, 428
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	508
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BauI	CACGAG	1 cut(s)	39
BccI	CCATC	3 cut(s)	212, 357, 359
BceAI	ACGGC	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	6 cut(s)	149, 266, 302, 371, 396, 488
BfuI	GTATCC	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	91, 142
BpmI	CTGGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	499
BsaXI	ACNNNNNCTCC	3 cut(s)	25, 55, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	472
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	2 cut(s)	345, 494
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	66, 234
BseNI	ACTGG	1 cut(s)	472
BsgI	GTGCAG	1 cut(s)	452
BshFI	GGCC	2 cut(s)	45, 369
BshNI	GGYRCC	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	45, 369
BsoBI	CYCGRG	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	438
BspANI	GGCC	2 cut(s)	45, 369
BspCNI	CTCAG	2 cut(s)	65, 235
BspLI	GGNNCC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	1 cut(s)	438
BssSI	CACGAG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	499
Bst2BI	CACGAG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	52, 243
BstF5I	GGATG	2 cut(s)	345, 494
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 248
BstSCI	CCNGG	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	45, 369
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	345, 494
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	4 cut(s)	232, 359, 442, 516
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	2 cut(s)	52, 243
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
DraIII	CACNNNGTG	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	161
EcoRV	GATATC	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	4 cut(s)	235, 362, 445, 519
FaiI	YATR	7 cut(s)	233, 291, 327, 360, 378, 443, 517
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	4 cut(s)	231, 358, 441, 515
FokI	GGATG	2 cut(s)	332, 481
FspBI	CTAG	6 cut(s)	149, 266, 302, 371, 396, 488
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	45, 369
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	4 cut(s)	235, 362, 445, 519
HinfI	GANTC	4 cut(s)	37, 50, 295, 383
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	542
Hpy188I	TCNGA	3 cut(s)	100, 449, 551
Hpy188III	TCNNGA	3 cut(s)	175, 339, 436
HpyAV	CCTTC	3 cut(s)	331, 405, 522
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	469, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 248
HpyF3I	CTNAG	2 cut(s)	52, 243
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	235, 362, 445, 519
Kzo9I	GATC	1 cut(s)	438
LpnPI	CCDG	9 cut(s)	60, 160, 198, 324, 449, 473, 479, 485, 491
LweI	GCATC	2 cut(s)	91, 142
MaeI	CTAG	6 cut(s)	149, 266, 302, 371, 396, 488
MaeII	ACGT	1 cut(s)	270
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	1 cut(s)	446
MluCI	AATT	6 cut(s)	65, 91, 114, 254, 415, 428
MlyI	GAGTC	3 cut(s)	31, 44, 392
MnlI	CCTC	5 cut(s)	21, 27, 80, 106, 215
MslI	CAYNNNNRTG	2 cut(s)	363, 514
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	10, 248
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	4 cut(s)	235, 362, 445, 519
NlaIV	GGNNCC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	295
PflFI	GACNNNGTC	1 cut(s)	557
PleI	GAGTC	3 cut(s)	31, 44, 391
PpsI	GAGTC	3 cut(s)	31, 44, 391
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	557
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	2 cut(s)	363, 514
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	3 cut(s)	31, 44, 392
ScrFI	CCNGG	1 cut(s)	47
SfaNI	GCATC	2 cut(s)	91, 142
SmiMI	CAYNNNNRTG	2 cut(s)	363, 514
Sse9I	AATT	6 cut(s)	65, 91, 114, 254, 415, 428
SspMI	CTAG	6 cut(s)	149, 266, 302, 371, 396, 488
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	118
TasI	AATT	6 cut(s)	65, 91, 114, 254, 415, 428
TfiI	GAWTC	1 cut(s)	295
TscAI	CASTG	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	342, 504
TspRI	CASTG	1 cut(s)	430
Tth111I	GACNNNGTC	1 cut(s)	557
XapI	RAATTY	4 cut(s)	114, 254, 415, 428
XspI	CTAG	6 cut(s)	149, 266, 302, 371, 396, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.