Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002350.1

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Reverse (-)

45393 .. 47742

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002350.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgcaaggacaaggttgcacctatatagcatttccggcgtataaagcttttgaggctgtcgcggttgctttacataatgcagtgaaagaggattccaaatctaccgaagctaaatttgtggcctccattctctcgaagaagcaaaagcagaagcagaaaaccaccaagctcggaagctccagaacccacatcaacaacctccccaagctcctctcctacgtcaccctaaccttacgccttagatggattgccaacacttatgatggcttctgcttgtggcccactaagtacaccaactattggatgagctccagccgatggaggaacggcggtggtaacgtggtgggtgagctcgctgaggctgatagggacccaagtattggattgaggctttaccttttgtcatgggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

137

Amino Acids

15.48

Weight (kDa)

9.7

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	300, 318, 380
AccII	CGCG	1 cut(s)	62
AciI	CCGC	2 cut(s)	62, 330
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	300, 318, 380
AluBI	AGCT	7 cut(s)	47, 110, 169, 177, 208, 309, 352
AluI	AGCT	7 cut(s)	47, 110, 169, 177, 208, 309, 352
Alw21I	GWGCWC	2 cut(s)	311, 354
AoxI	GGCC	2 cut(s)	120, 278
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	279, 370
AsuHPI	GGTGA	2 cut(s)	214, 359
AvaII	GGWCC	1 cut(s)	370
BanII	GRGCYC	2 cut(s)	311, 354
Bbv12I	GWGCWC	2 cut(s)	311, 354
BbvCI	CCTCAGC	1 cut(s)	357
BccI	CCATC	3 cut(s)	237, 257, 312
BceAI	ACGGC	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	279, 370
BmiI	GGNNCC	2 cut(s)	371, 372
BpmI	CTGGAG	2 cut(s)	163, 295
Bpu10I	CCTNAGC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 318, 380
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	300, 318, 380
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	122, 280
BsiHKAI	GWGCWC	2 cut(s)	311, 354
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	300, 318, 380
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	122, 280
Bsp1286I	GDGCHC	2 cut(s)	311, 354
BspACI	CCGC	2 cut(s)	62, 330
BspANI	GGCC	2 cut(s)	122, 280
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	371, 372
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	239, 285, 357
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
BstUI	CGCG	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	122, 280
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	279, 370
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	405
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	239, 285, 357
Ecl136II	GAGCTC	2 cut(s)	309, 352
Eco24I	GRGCYC	2 cut(s)	311, 354
Eco47I	GGWCC	1 cut(s)	370
Eco53kI	GAGCTC	2 cut(s)	309, 352
EcoICRI	GAGCTC	2 cut(s)	309, 352
EcoO109I	RGGNCCY	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	311, 354
FaeI	CATG	1 cut(s)	408
FaiI	YATR	6 cut(s)	24, 26, 42, 75, 261, 406
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	1 cut(s)	404
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	2 cut(s)	311, 354
GsuI	CTGGAG	2 cut(s)	163, 295
HaeIII	GGCC	2 cut(s)	122, 280
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	214, 359
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	2 cut(s)	133, 180
Hpy8I	GTNNAC	1 cut(s)	291
HpyCH4IV	ACGT	2 cut(s)	219, 339
HpyCH4V	TGCA	3 cut(s)	4, 18, 80
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
HpyF3I	CTNAG	3 cut(s)	239, 285, 357
HpySE526I	ACGT	2 cut(s)	219, 339
Hsp92II	CATG	1 cut(s)	408
KflI	GGGWCCC	1 cut(s)	370
LmnI	GCTCC	3 cut(s)	182, 213, 314
LpnPI	CCDG	3 cut(s)	48, 193, 325
MaeII	ACGT	2 cut(s)	219, 339
MaeIII	GTNAC	2 cut(s)	220, 335
MboII	GAAGA	1 cut(s)	148
MhlI	GDGCHC	2 cut(s)	311, 354
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	8 cut(s)	46, 82, 133, 209, 221, 315, 352, 381
MspI	CCGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	2 cut(s)	371, 372
NmuCI	GTSAC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	92
PflMI	CCANNNNNTGG	3 cut(s)	300, 318, 380
PpuMI	RGGWCCY	1 cut(s)	370
Psp124BI	GAGCTC	2 cut(s)	311, 354
Psp5II	RGGWCCY	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	371, 372
PspPI	GGNCC	2 cut(s)	279, 370
PspPPI	RGGWCCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	2 cut(s)	311, 354
Sau96I	GGNCC	2 cut(s)	279, 370
SduI	GDGCHC	2 cut(s)	311, 354
SinI	GGWCC	1 cut(s)	370
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	2 cut(s)	62, 330
SstI	GAGCTC	2 cut(s)	311, 354
TaiI	ACGT	2 cut(s)	222, 342
TaqI	TCGA	1 cut(s)	134
TasI	AATT	1 cut(s)	113
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspRI	CASTG	1 cut(s)	87
Van91I	CCANNNNNTGG	3 cut(s)	300, 318, 380
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.