Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Reverse (-)

50582025 .. 50583277

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAACCAGGATCTCAAGGCAATTAATGGGTTCCAAGCCTTTTCGGCTAAATCGGGCTCTGAGGTGGACTCGGCCTCCATGGCCCGGACTCAGCTCATCAGCAATTCCTCCGCGAGCTCATCAACAATTCCTCTGATGTGGGCTTTGGGTAAAATTCTATTTGAGAGCCTTACTGACAAGAGCAAGCTAGATGCTCAACCCGAGCTTTTTATCAGGCTTGTGCCTGATAAGACCAACAACACCCTCTCCATCATTGATAGCGGTATTGGCATGACTAAAGCAGCTTTTGAGACAGGCTACTGCCTTAGGCTAGAAGGATATGGTGTAAGAATTCATTTCTCTAGTAATGTGGATGGAAACAATTATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

124

Amino Acids

13.27

Weight (kDa)

5.72

Isoelectric Point (pI)

16.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	111, 261
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	153, 330
AfiI	CCNNNNNNNGG	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	5 cut(s)	94, 117, 187, 205, 284
AluI	AGCT	5 cut(s)	94, 117, 187, 205, 284
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	72, 81
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	2 cut(s)	153, 330
AseI	ATTAAT	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	200
AxyI	CCTNAGG	1 cut(s)	305
BanII	GRGCYC	2 cut(s)	59, 119
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	257, 347
BciT130I	CCWGG	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	3 cut(s)	188, 311, 342
BglI	GCCNNNNNGGC	2 cut(s)	44, 80
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	8, 85
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	8, 85
BmsI	GCATC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpuMI	CCSGG	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse21I	CCTNAGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	51, 104
BseXI	GCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	2 cut(s)	74, 83
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	74, 83
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	59, 119
Bsp143I	GATC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	2 cut(s)	111, 261
BspANI	GGCC	2 cut(s)	74, 83
BspCNI	CTCAG	2 cut(s)	52, 103
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	115, 185
BstDEI	CTNAG	3 cut(s)	60, 90, 305
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 80, 267
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	6, 83
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	74, 83
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	115, 185
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	2 cut(s)	79, 271
DdeI	CTNAG	3 cut(s)	60, 90, 305
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	59, 119
Eco53kI	GAGCTC	1 cut(s)	117
Eco81I	CCTNAGG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	59, 119
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	82, 274
FaiI	YATR	4 cut(s)	80, 272, 321, 366
FatI	CATG	2 cut(s)	78, 270
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	2 cut(s)	59, 119
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	188, 311, 342
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	74, 83
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	2 cut(s)	82, 274
HinfI	GANTC	2 cut(s)	68, 88
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	61, 135
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 80, 267
HpyF3I	CTNAG	3 cut(s)	60, 90, 305
Hsp92II	CATG	2 cut(s)	82, 274
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	20, 98, 199, 237, 279
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	3 cut(s)	188, 311, 342
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	59, 119
MluCI	AATT	6 cut(s)	21, 103, 126, 153, 330, 361
MlyI	GAGTC	2 cut(s)	62, 82
MnlI	CCTC	5 cut(s)	55, 85, 118, 141, 254
MseI	TTAA	2 cut(s)	24, 370
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	8, 85
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	44, 80, 267
NciI	CCSGG	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	82, 274
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	2 cut(s)	62, 82
PpsI	GAGTC	2 cut(s)	62, 82
PshBI	ATTAAT	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	24, 370
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	2 cut(s)	62, 82
ScrFI	CCNGG	2 cut(s)	8, 85
SduI	GDGCHC	2 cut(s)	59, 119
SetI	ASST	6 cut(s)	66, 96, 119, 189, 207, 286
SfaNI	GCATC	1 cut(s)	181
SfiI	GGCCNNNNNGGCC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	21, 103, 126, 153, 330, 361
SsiI	CCGC	2 cut(s)	111, 261
SspMI	CTAG	3 cut(s)	188, 311, 342
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	6, 83
StyI	CCWWGG	1 cut(s)	78
TasI	AATT	6 cut(s)	21, 103, 126, 153, 330, 361
Tru1I	TTAA	2 cut(s)	24, 370
Tru9I	TTAA	2 cut(s)	24, 370
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	17, 323
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	2 cut(s)	153, 330
XspI	CTAG	3 cut(s)	188, 311, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.