Rmu_co8343221.1_g000001

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8343221.1
OG0004866
Physical Location & Seq
Forward (+)
377 .. 1015
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8343221.1_g000001.1.cds

Sequence Viewer

Length: 422 bp
atgtttcgctatgcagatggcacagacaagttgctgatgctttttgggactctaggcagcattggtgatgggttgcagaaccctctcatgatgttcattcttagtgaggtgatcaactcatatggaagttccagtggcgctttgactaatgctgatgtagacaagtttgcactcaggctattctatgttgctattggagttggacttgctgcatttgttgaagggttatgttggacaaggaccgcggagaggcagacttcgagaatgagaatgaagtatcttaattctgttctcaaacaagaagtttccttctttgacacccaaactgctggttcttcaacaaccttccaagttatttcaatcatctcctccgatgccaatgcagtgcaagttgctttatgcgagaaggttagatttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

140

Amino Acids

15.35

Weight (kDa)

6.2

Isoelectric Point (pI)

20.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 245
AciI CCGC 2 cut(s) 243, 245
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 3 cut(s) 221, 339, 360
ApeKI GCWGC 2 cut(s) 57, 209
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 77, 121
AvaII GGWCC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 69, 196
BccI CCATC 2 cut(s) 11, 62
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BclI TGATCA 1 cut(s) 111
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 2 cut(s) 58, 210
BlsI GCNGC 2 cut(s) 59, 211
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmsI GCATC 2 cut(s) 27, 364
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 358
BseXI GCAGC 2 cut(s) 69, 196
Bsh1236I CGCG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 2 cut(s) 243, 245
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 245
BspHI TCATGA 1 cut(s) 87
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 101, 173, 419
BstDSI CCRYGG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 69, 196
BstXI CCANNNNNNTGG 1 cut(s) 329
BtgI CCRYGG 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 139, 390
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 240
Cfr42I CCGCGG 1 cut(s) 246
CviAII CATG 1 cut(s) 88
CviJI RGCY 1 cut(s) 178
CviKI_1 RGCY 1 cut(s) 178
DdeI CTNAG 3 cut(s) 101, 173, 419
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 240
FaeI CATG 1 cut(s) 91
FaiI YATR 7 cut(s) 12, 89, 121, 123, 186, 229, 400
FaqI GGGAC 1 cut(s) 61
FatI CATG 1 cut(s) 87
FauNDI CATATG 1 cut(s) 121
FbaI TGATCA 1 cut(s) 111
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 58, 210
Fsp4HI GCNGC 2 cut(s) 58, 210
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 58, 210
HaeII RGCGCY 1 cut(s) 141
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 49
HphI GGTGA 2 cut(s) 77, 121
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 88, 261
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 4 cut(s) 215, 319, 355, 400
HpyCH4V TGCA 6 cut(s) 14, 76, 170, 212, 383, 388
HpyF3I CTNAG 3 cut(s) 101, 173, 419
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 111
KspI CCGCGG 1 cut(s) 246
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 3 cut(s) 145, 160, 315
Lsp1109I GCAGC 2 cut(s) 69, 196
LweI GCATC 2 cut(s) 27, 364
MaeI CTAG 1 cut(s) 53
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 1 cut(s) 327
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 2 cut(s) 181, 212
MnlI CCTC 4 cut(s) 93, 100, 243, 379
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 245
MvnI CGCG 1 cut(s) 245
NdeI CATATG 1 cut(s) 121
NdeII GATC 1 cut(s) 111
NlaIII CATG 1 cut(s) 91
PagI TCATGA 1 cut(s) 87
PkrI GCNGC 2 cut(s) 59, 211
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 240
SacII CCGCGG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 58, 210
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 1 cut(s) 43
SetI ASST 3 cut(s) 111, 347, 411
SfaNI GCATC 2 cut(s) 27, 364
Sfr303I CCGCGG 1 cut(s) 246
SgrBI CCGCGG 1 cut(s) 246
SinI GGWCC 1 cut(s) 240
Sse9I AATT 1 cut(s) 283
SsiI CCGC 2 cut(s) 243, 245
SspMI CTAG 1 cut(s) 53
TaqI TCGA 1 cut(s) 260
TasI AATT 1 cut(s) 283
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 139, 390
TseI GCWGC 2 cut(s) 57, 209
TspDTI ATGAA 2 cut(s) 85, 287
TspRI CASTG 2 cut(s) 139, 390
VpaK11BI GGWCC 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.