Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Forward (+)

30174492 .. 30175753

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGCTTGTTATTAAGCAAGGTTTCATAAAGGGAGTGATGATAGGGAGCATGGGAATTGTTAATGCTGCTTGGGCTTTCCCGGGTTGGATTGGTAGCATACTTTTCATTGAGAAAGGAGAGAAAGGAGGCACTGTCGTCGTTGCTAGTATCTGCATCGTCTGGAAGGATTTGTTTCCAATGGTTTACGTTGGTCAATTTGGAGTTCAGTTGTCTGGAGAGCAAAAGCAAAGGGTTGCTATAGCAAGGCCTCTCGTTAGAAATCCCATAATCCTTCTGCTTGACAAAGCCACAAGCGCTTTCGATGCACAATCCAAAAGAGTAGTACAAGAAGCCCAGGACCTGGCTTCAGTAGGACGGACAACTCCATTGTTGCTCATCGGCTTTCCACAATATGCAAAGCTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

137

Amino Acids

14.75

Weight (kDa)

9.61

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	327
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	336, 342
AluBI	AGCT	2 cut(s)	7, 403
AluI	AGCT	2 cut(s)	7, 403
AlwNI	CAGNNNCTG	1 cut(s)	343
Ama87I	CYCGRG	1 cut(s)	82
Aor51HI	AGCGCT	1 cut(s)	298
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	2 cut(s)	83, 84
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	2 cut(s)	338, 344
BcnI	CCSGG	2 cut(s)	83, 84
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	4 cut(s)	83, 84, 338, 344
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	340
BmrFI	CCNGG	4 cut(s)	83, 84, 338, 344
BmsI	GCATC	2 cut(s)	165, 295
BpmI	CTGGAG	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	83, 84
BsaJI	CCNNGG	2 cut(s)	82, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	338, 344
BseDI	CCNNGG	2 cut(s)	82, 336
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	343
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	82
BspANI	GGCC	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	82, 336
Bst2UI	CCWGG	2 cut(s)	338, 344
Bst4CI	ACNGT	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 296, 305
BstNI	CCWGG	2 cut(s)	338, 344
BstSCI	CCNGG	4 cut(s)	81, 82, 336, 342
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	343
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	340
Cfr9I	CCCGGG	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	8 cut(s)	7, 77, 250, 290, 335, 347, 384, 403
CviKI_1	RGCY	8 cut(s)	7, 77, 250, 290, 335, 347, 384, 403
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	404
Eco147I	AGGCCT	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	340
Eco47III	AGCGCT	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	336, 342
FaeI	CATG	1 cut(s)	55
FaiI	YATR	6 cut(s)	29, 53, 101, 242, 269, 396
FatI	CATG	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	163, 216
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	160, 284
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	156, 308, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 296, 305
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	4, 48
LpnPI	CCDG	7 cut(s)	96, 148, 201, 323, 329, 350, 356
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	2 cut(s)	165, 295
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	189
MluCI	AATT	2 cut(s)	57, 197
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	2 cut(s)	122, 261
MseI	TTAA	2 cut(s)	15, 63
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	4 cut(s)	83, 84, 338, 344
MvaI	CCWGG	2 cut(s)	338, 344
MwoI	GCNNNNNNNGC	3 cut(s)	74, 296, 305
NciI	CCSGG	2 cut(s)	83, 84
NlaIII	CATG	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	336, 342
PspGI	CCWGG	2 cut(s)	336, 342
PspPI	GGNCC	1 cut(s)	340
PspPPI	RGGWCCY	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SaqAI	TTAA	2 cut(s)	15, 63
SatI	GCNGC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	340
ScrFI	CCNGG	4 cut(s)	83, 84, 338, 344
SetI	ASST	5 cut(s)	9, 25, 192, 345, 405
SfaNI	GCATC	2 cut(s)	165, 295
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	340
SmaI	CCCGGG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	57, 197
SseBI	AGGCCT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	4 cut(s)	81, 82, 336, 342
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	57, 197
TatI	WGTACW	1 cut(s)	325
Tru1I	TTAA	2 cut(s)	15, 63
Tru9I	TTAA	2 cut(s)	15, 63
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	16, 97
TspGWI	ACGGA	1 cut(s)	373
TspMI	CCCGGG	1 cut(s)	82
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	340
XmaI	CCCGGG	1 cut(s)	82
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.