Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Reverse (-)

1993784 .. 1994602

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTATCCAGTGGCCATTATAAACAAGCAGGCCAGCAGGTTTATTTTTGCGTTACTAATTACTACTGCTTGTCATCATCTCCGAGAGAGACTCAGAAAAAAATGAGTAGTGTAGAGAAGAGTAGTAATGGAGAAAAGAAGAAGAAGAAAAACGGGTCGATACGCTCCATTTTCGCGCATGCAGATGGAGTGGACATGTTGTTGATGACTCTAGGGTTGCTCGGAGCCATTTTTGATGGATTGACCTCGCGGTTGCTTGCCGTTCTCTCTAGCAGGTTGTTTAACCTTATGGGGAGAGCGGACAAACATGGAGCCTCAGATTTCGACGCACATATTTTGCACCGTTATATCAATAAGGACGGAATACTCGCTTTCGTTTACTTAGCTTTGGCGTCGTGGGTTGCTTGTTTCTTAGAGGGTTATTGTTGGACAAGAACAGGGGAGAGACAAACTGCAAGAATGAGAAGCAGGTATTTGAAAGCAGTGTTAAGGCAAGATGTAGGTTACTTTGATTTGCATGTAACAAGCACAGCCGAGGTCATCACAAGCATCTCAAACGACATTCAGGTCATCCAAGACGTGCTTGGTGAAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

200

Amino Acids

22.26

Weight (kDa)

9.26

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AasI	GACNNNNNNGTC	1 cut(s)	566
Acc36I	ACCTGC	3 cut(s)	28, 264, 459
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	2 cut(s)	176, 250
AciI	CCGC	2 cut(s)	250, 299
AcoI	YGGCCR	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	478
AjiI	CACGTC	1 cut(s)	580
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Alw26I	GTCTC	2 cut(s)	83, 439
AoxI	GGCC	2 cut(s)	13, 31
AspLEI	GCGC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	15
BccI	CCATC	2 cut(s)	179, 230
BceAI	ACGGC	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	83, 439
BfaI	CTAG	2 cut(s)	212, 270
BfuAI	ACCTGC	3 cut(s)	28, 264, 459
BmgBI	CACGTC	1 cut(s)	580
BmiI	GGNNCC	2 cut(s)	226, 313
BmsI	GCATC	1 cut(s)	558
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
BsaHI	GRCGYC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	534
Bse1I	ACTGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	107, 330
BseNI	ACTGG	1 cut(s)	9
Bsh1236I	CGCG	2 cut(s)	176, 250
BshFI	GGCC	2 cut(s)	15, 33
BsmAI	GTCTC	2 cut(s)	83, 439
BsnI	GGCC	2 cut(s)	15, 33
BspACI	CCGC	2 cut(s)	250, 299
BspANI	GGCC	2 cut(s)	15, 33
BspCNI	CTCAG	2 cut(s)	106, 329
BspFNI	CGCG	2 cut(s)	176, 250
BspLI	GGNNCC	2 cut(s)	226, 313
BspMI	ACCTGC	3 cut(s)	28, 264, 459
BsrBI	CCGCTC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	534
BssNI	GRCGYC	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	392
BstC8I	GCNNGC	4 cut(s)	31, 35, 180, 258
BstDEI	CTNAG	4 cut(s)	93, 316, 382, 412
BstF5I	GGATG	1 cut(s)	570
BstFNI	CGCG	2 cut(s)	176, 250
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	2 cut(s)	83, 439
BstNSI	RCATGY	3 cut(s)	182, 199, 521
BstUI	CGCG	2 cut(s)	176, 250
BsuRI	GGCC	2 cut(s)	15, 33
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	570
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	16, 489
BveI	ACCTGC	3 cut(s)	28, 264, 459
Cac8I	GCNNGC	4 cut(s)	31, 35, 180, 258
CfoI	GCGC	1 cut(s)	178
CseI	GACGC	2 cut(s)	335, 381
CviAII	CATG	4 cut(s)	179, 196, 308, 518
CviJI	RGCY	6 cut(s)	15, 33, 227, 314, 386, 533
CviKI_1	RGCY	6 cut(s)	15, 33, 227, 314, 386, 533
DdeI	CTNAG	4 cut(s)	93, 316, 382, 412
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
FaeI	CATG	4 cut(s)	182, 199, 311, 521
FaiI	YATR	8 cut(s)	21, 180, 197, 290, 309, 333, 348, 519
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	4 cut(s)	178, 195, 307, 517
FokI	GGATG	1 cut(s)	557
FspBI	CTAG	2 cut(s)	212, 270
GlaI	GCGC	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	15, 33
HgaI	GACGC	2 cut(s)	335, 381
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	392
Hin1II	CATG	4 cut(s)	182, 199, 311, 521
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	91, 208
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	2 cut(s)	193, 379
Hpy188I	TCNGA	4 cut(s)	84, 96, 224, 319
Hpy8I	GTNNAC	2 cut(s)	193, 379
Hpy99I	CGWCG	2 cut(s)	329, 397
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	4 cut(s)	182, 340, 455, 517
HpyF3I	CTNAG	4 cut(s)	93, 316, 382, 412
HpySE526I	ACGT	1 cut(s)	579
Hsp92I	GRCGYC	1 cut(s)	392
Hsp92II	CATG	4 cut(s)	182, 199, 311, 521
HspAI	GCGC	1 cut(s)	176
LmnI	GCTCC	3 cut(s)	170, 224, 311
LpnPI	CCDG	8 cut(s)	15, 22, 23, 47, 259, 423, 454, 551
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	2 cut(s)	212, 270
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	52, 503, 520
MbiI	CCGCTC	1 cut(s)	299
MboII	GAAGA	4 cut(s)	130, 151, 154, 157
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	1 cut(s)	58
MluNI	TGGCCA	1 cut(s)	15
MlyI	GAGTC	2 cut(s)	85, 202
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	4 cut(s)	256, 325, 409, 529
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	2 cut(s)	282, 488
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	15
MvnI	CGCG	2 cut(s)	176, 250
NlaIII	CATG	4 cut(s)	182, 199, 311, 521
NlaIV	GGNNCC	2 cut(s)	226, 313
NmeAIII	GCCGAG	1 cut(s)	559
NspI	RCATGY	3 cut(s)	182, 199, 521
PaeI	GCATGC	1 cut(s)	182
PciI	ACATGT	1 cut(s)	195
PleI	GAGTC	2 cut(s)	85, 202
PpsI	GAGTC	2 cut(s)	85, 202
PscI	ACATGT	1 cut(s)	195
PsiI	TTATAA	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	226, 313
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	282, 488
SchI	GAGTC	2 cut(s)	85, 202
SfaNI	GCATC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	183
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	250, 299
SspMI	CTAG	2 cut(s)	212, 270
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	158, 324
TasI	AATT	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	282, 488
Tru9I	TTAA	2 cut(s)	282, 488
TscAI	CASTG	2 cut(s)	16, 489
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	16, 489
XceI	RCATGY	3 cut(s)	182, 199, 521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XspI	CTAG	2 cut(s)	212, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.