Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008938.1

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 6061

Gene Structure 6061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008938.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 718 bp

aagggttatgttggacagggaccatggagaggcagacttcgagaatgagaatgaacttctcaaacaagaagtttccttctttgacatccacattactggttcttctacaaccttccaagttatttcaatcatctcctccgatgccaatgcagtgcaagttgctttatgcgagaaggttagatttcatactgtgaaagaggattccaaatctaccgaagctaaatttgtggcctccattctctcgaagaagcaaaagcagaagcagaaaaccaccaagctcggaagctccagaaccccacatcaacaacctccccaagctcctctcctacgtcaccctaacctcaccgccttaggtattcaatttgggggtttgatgggtaaattgaaggaggaggcacccaagaacattgagtatgaaatcggagggatccagaacgatagttccgttatggtcttaacagcgtcaagagcaaccttgttggctctcacccaatcgaatctgctcaccaatcggccaacacttacggacctgcgtttccgatcaggatggattgccaacacttacgatggcttctgcttgtggcctactgagtacaccaactattggatgagctccagccggtggaggaaagacggtggtgacgtggtgggtgagctcgctgaggctgctagggatgcaagtattggattgaggctttaccttttgtcatgggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

238

Amino Acids

26.64

Weight (kDa)

7.15

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
AccB1I	GGYRCC	1 cut(s)	395
AccB7I	CCANNNNNTGG	2 cut(s)	604, 622
AciI	CCGC	1 cut(s)	346
AclWI	GGATC	2 cut(s)	422, 435
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	222
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	3 cut(s)	29, 604, 622
AgsI	TTSAA	3 cut(s)	127, 360, 386
AjiI	CACGTC	1 cut(s)	644
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	6 cut(s)	219, 278, 286, 318, 613, 656
AluI	AGCT	6 cut(s)	219, 278, 286, 318, 613, 656
Alw21I	GWGCWC	2 cut(s)	615, 658
AlwI	GGATC	2 cut(s)	422, 435
AoxI	GGCC	3 cut(s)	229, 513, 582
ApeKI	GCWGC	1 cut(s)	666
ApoI	RAATTY	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	20, 527
AsuHPI	GGTGA	6 cut(s)	324, 335, 479, 497, 651, 663
AvaII	GGWCC	2 cut(s)	20, 527
AxyI	CCTNAGG	1 cut(s)	350
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	615, 658
Bbv12I	GWGCWC	2 cut(s)	615, 658
BbvCI	CCTCAGC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	653
BccI	CCATC	3 cut(s)	368, 541, 561
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BfaI	CTAG	1 cut(s)	670
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	1 cut(s)	667
BlsI	GCNGC	1 cut(s)	668
Bme18I	GGWCC	2 cut(s)	20, 527
BmgBI	CACGTC	1 cut(s)	644
BmgT120I	GGNCC	2 cut(s)	20, 527
BmiI	GGNNCC	3 cut(s)	21, 397, 429
BmsI	GCATC	2 cut(s)	131, 665
BpmI	CTGGAG	2 cut(s)	272, 599
Bpu10I	CCTNAGC	1 cut(s)	661
BsaJI	CCNNGG	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 604, 622
Bse118I	RCCGGY	1 cut(s)	619
Bse1I	ACTGG	1 cut(s)	101
Bse21I	CCTNAGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	4 cut(s)	85, 552, 613, 680
BseLI	CCNNNNNNNGG	3 cut(s)	29, 604, 622
BseMII	CTCAG	2 cut(s)	580, 652
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	3 cut(s)	125, 310, 405
BseXI	GCAGC	1 cut(s)	653
BshFI	GGCC	3 cut(s)	231, 515, 584
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	615, 658
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	29, 604, 622
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	3 cut(s)	231, 515, 584
Bsp1286I	GDGCHC	2 cut(s)	615, 658
Bsp143I	GATC	2 cut(s)	427, 540
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	3 cut(s)	231, 515, 584
BspCNI	CTCAG	2 cut(s)	581, 653
BspLI	GGNNCC	3 cut(s)	21, 397, 429
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	2 cut(s)	422, 435
BspT107I	GGYRCC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	619
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	619
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	2 cut(s)	427, 540
BssT1I	CCWWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	191, 636
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	3 cut(s)	350, 589, 661
BstDSI	CCRYGG	1 cut(s)	23
BstF5I	GGATG	4 cut(s)	85, 552, 613, 680
BstKTI	GATC	2 cut(s)	430, 543
BstMBI	GATC	2 cut(s)	427, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	468, 666, 675
BstV1I	GCAGC	1 cut(s)	653
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	427
Bsu36I	CCTNAGG	1 cut(s)	350
BsuRI	GGCC	3 cut(s)	231, 515, 584
BtgI	CCRYGG	1 cut(s)	23
BtrI	CACGTC	1 cut(s)	644
BtsCI	GGATG	4 cut(s)	85, 552, 613, 680
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	658
Cfr10I	RCCGGY	1 cut(s)	619
Cfr13I	GGNCC	2 cut(s)	20, 527
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	593
CviAII	CATG	2 cut(s)	24, 709
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	3 cut(s)	350, 589, 661
DpnI	GATC	2 cut(s)	429, 542
DpnII	GATC	2 cut(s)	427, 540
EaeI	YGGCCR	1 cut(s)	513
Ecl136II	GAGCTC	2 cut(s)	613, 656
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	2 cut(s)	615, 658
Eco47I	GGWCC	2 cut(s)	20, 527
Eco53kI	GAGCTC	2 cut(s)	613, 656
Eco81I	CCTNAGG	1 cut(s)	350
EcoICRI	GAGCTC	2 cut(s)	613, 656
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	2 cut(s)	615, 658
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	2 cut(s)	27, 712
FaiI	YATR	7 cut(s)	9, 25, 167, 187, 415, 450, 710
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	2 cut(s)	23, 708
Fnu4HI	GCNGC	1 cut(s)	667
FokI	GGATG	4 cut(s)	72, 559, 620, 687
FriOI	GRGCYC	2 cut(s)	615, 658
Fsp4HI	GCNGC	1 cut(s)	667
FspBI	CTAG	1 cut(s)	670
GluI	GCNGC	1 cut(s)	667
GsuI	CTGGAG	2 cut(s)	272, 599
HaeIII	GGCC	3 cut(s)	231, 515, 584
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	27, 712
HinfI	GANTC	2 cut(s)	201, 497
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	6 cut(s)	324, 335, 479, 497, 651, 663
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	4 cut(s)	140, 282, 423, 540
Hpy188III	TCNNGA	6 cut(s)	41, 242, 289, 431, 466, 544
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	4 cut(s)	86, 122, 167, 380
HpyCH4III	ACNGT	2 cut(s)	191, 636
HpyCH4IV	ACGT	2 cut(s)	329, 643
HpyCH4V	TGCA	3 cut(s)	150, 155, 678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	468, 666, 675
HpyF3I	CTNAG	3 cut(s)	350, 589, 661
HpySE526I	ACGT	2 cut(s)	329, 643
Hsp92II	CATG	2 cut(s)	27, 712
Kzo9I	GATC	2 cut(s)	427, 540
LmnI	GCTCC	3 cut(s)	291, 323, 618
LpnPI	CCDG	8 cut(s)	2, 82, 302, 444, 529, 543, 629, 633
Lsp1109I	GCAGC	1 cut(s)	653
LweI	GCATC	2 cut(s)	131, 665
MaeI	CTAG	1 cut(s)	670
MaeII	ACGT	2 cut(s)	329, 643
MaeIII	GTNAC	2 cut(s)	330, 639
MalI	GATC	2 cut(s)	429, 542
MboI	GATC	2 cut(s)	427, 540
MboII	GAAGA	2 cut(s)	94, 257
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	2 cut(s)	615, 658
MluCI	AATT	3 cut(s)	222, 360, 381
MseI	TTAA	1 cut(s)	456
MspI	CCGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	3 cut(s)	468, 666, 675
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	2 cut(s)	427, 540
NlaIII	CATG	2 cut(s)	27, 712
NlaIV	GGNNCC	3 cut(s)	21, 397, 429
NmuCI	GTSAC	2 cut(s)	330, 639
PcsI	WCGNNNNNNNCGW	2 cut(s)	442, 640
PfeI	GAWTC	2 cut(s)	201, 497
PflMI	CCANNNNNTGG	2 cut(s)	604, 622
PkrI	GCNGC	1 cut(s)	668
Psp124BI	GAGCTC	2 cut(s)	615, 658
PspN4I	GGNNCC	3 cut(s)	21, 397, 429
PspPI	GGNCC	2 cut(s)	20, 527
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
SacI	GAGCTC	2 cut(s)	615, 658
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	1 cut(s)	667
Sau3AI	GATC	2 cut(s)	427, 540
Sau96I	GGNCC	2 cut(s)	20, 527
SduI	GDGCHC	2 cut(s)	615, 658
SfaNI	GCATC	2 cut(s)	131, 665
SinI	GGWCC	2 cut(s)	20, 527
Sse9I	AATT	3 cut(s)	222, 360, 381
SsiI	CCGC	1 cut(s)	346
SspMI	CTAG	1 cut(s)	670
SstI	GAGCTC	2 cut(s)	615, 658
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	191, 636
TaiI	ACGT	2 cut(s)	332, 646
TaqI	TCGA	3 cut(s)	40, 243, 495
TasI	AATT	3 cut(s)	222, 360, 381
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	2 cut(s)	201, 497
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	330, 639
TseI	GCWGC	1 cut(s)	666
Tsp45I	GTSAC	2 cut(s)	330, 639
TspDTI	ATGAA	3 cut(s)	67, 174, 430
TspGWI	ACGGA	2 cut(s)	434, 540
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	2 cut(s)	604, 622
VpaK11BI	GGWCC	2 cut(s)	20, 527
XapI	RAATTY	1 cut(s)	222
XspI	CTAG	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.