Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Forward (+)

59711263 .. 59712686

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG337400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGGAGCACAGGAGGCTTCCTTTGGTATGCTGATGAGATCGACAAGCTGTTGTTGTTGTTAGGCACTTTGGGTAGCGTTGGAGATGGTGCAATGACCCCATTAACTATGGTAATCCTCGGCGGGTGGATGAATGATTATGGATCATCTTCTCCTTCCAATGAGACTGTAGACAAGGGAGTGATGATAGGGATCATGGGAATTGTTAATGCTACTTGGGCTTTCCCGGGTTGGATTGGTAGCATACTTGTCATTGAGAAAGGAGGCACTGTCGTAGTTGCTAGTATCTGCATCATCTGGAAGGACTGTAAGTCCATAATGAGTGTACTCCAAAATCTGTCTTTCATCATGGAGGTGACATCCGTTGCTATTCAGGTGTTTGAAATGATTGAAAGAGATCCTGCCATAGACACTATGAAAAGTATTGGGACATTTGAAAGGAAAAGTGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

151

Amino Acids

16.15

Weight (kDa)

4.44

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	3 cut(s)	151, 200, 392
AfaI	GTAC	1 cut(s)	327
AgsI	TTSAA	3 cut(s)	383, 392, 437
AhdI	GACNNNNNGTC	1 cut(s)	310
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	3 cut(s)	151, 200, 392
Ama87I	CYCGRG	1 cut(s)	226
AsuC2I	CCSGG	2 cut(s)	227, 228
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	227, 228
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	227, 228
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	227, 228
BmsI	GCATC	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	227, 228
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	118, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	118, 226
BseGI	GGATG	2 cut(s)	135, 359
BseJI	GATNNNNATC	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	39, 143, 192, 397
BspACI	CCGC	1 cut(s)	123
BspPI	GGATC	3 cut(s)	151, 200, 392
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	118, 226
BssMI	GATC	4 cut(s)	39, 143, 192, 397
Bst4CI	ACNGT	3 cut(s)	169, 271, 308
BstF5I	GGATG	2 cut(s)	135, 359
BstKTI	GATC	4 cut(s)	42, 146, 195, 400
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	39, 143, 192, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 218
BstSCI	CCNGG	2 cut(s)	225, 226
BstSFI	CTRYAG	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BtsCI	GGATG	2 cut(s)	135, 359
BtsIMutI	CAGTG	1 cut(s)	267
Cfr9I	CCCGGG	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	2 cut(s)	196, 349
CviJI	RGCY	3 cut(s)	18, 49, 221
CviKI_1	RGCY	3 cut(s)	18, 49, 221
CviQI	GTAC	1 cut(s)	326
DpnI	GATC	4 cut(s)	41, 145, 194, 399
DpnII	GATC	4 cut(s)	39, 143, 192, 397
DriI	GACNNNNNGTC	1 cut(s)	310
Eam1105I	GACNNNNNGTC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	226
FaeI	CATG	2 cut(s)	199, 352
FaiI	YATR	9 cut(s)	30, 110, 141, 197, 245, 317, 350, 407, 416
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	195, 348
FauI	CCCGC	1 cut(s)	116
FblI	GTMKAC	1 cut(s)	171
FokI	GGATG	2 cut(s)	142, 346
FspBI	CTAG	1 cut(s)	282
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	2 cut(s)	199, 352
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	2 cut(s)	172, 326
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	2 cut(s)	172, 326
HpyAV	CCTTC	2 cut(s)	165, 295
HpyCH4III	ACNGT	3 cut(s)	169, 271, 308
HpyCH4V	TGCA	2 cut(s)	92, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 218
Hsp92II	CATG	2 cut(s)	199, 352
Kzo9I	GATC	4 cut(s)	39, 143, 192, 397
LmnI	GCTCC	1 cut(s)	6
LpnPI	CCDG	4 cut(s)	240, 283, 359, 414
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	4 cut(s)	41, 145, 194, 399
MboI	GATC	4 cut(s)	39, 143, 192, 397
MboII	GAAGA	1 cut(s)	141
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	201
MmeI	TCCRAC	2 cut(s)	61, 212
MnlI	CCTC	4 cut(s)	8, 128, 257, 346
MseI	TTAA	3 cut(s)	104, 207, 454
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	227, 228
MwoI	GCNNNNNNNGC	2 cut(s)	15, 218
NciI	CCSGG	2 cut(s)	227, 228
NdeII	GATC	4 cut(s)	39, 143, 192, 397
NlaIII	CATG	2 cut(s)	199, 352
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	3 cut(s)	104, 207, 454
Sau3AI	GATC	4 cut(s)	39, 143, 192, 397
ScrFI	CCNGG	2 cut(s)	227, 228
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	3 cut(s)	51, 357, 378
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	168
SmaI	CCCGGG	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	225, 226
TaaI	ACNGT	3 cut(s)	169, 271, 308
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	201
TatI	WGTACW	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	104, 207, 454
Tru9I	TTAA	3 cut(s)	104, 207, 454
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	146, 334, 431
TspGWI	ACGGA	1 cut(s)	352
TspMI	CCCGGG	1 cut(s)	226
TspRI	CASTG	1 cut(s)	274
XmaI	CCCGGG	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.