Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004866

Physical Location & Seq

Genomic Coordinates Forward (+)

48809730 .. 48812323

Gene Structure 2594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGGAGCACAGGAGGCTTCCTTTGGTATGCTGATGAGATCGACAAGCTGTTGTTGTTGTTAGGCACTTTGGGTAGCGTTGGAGATGGTGCAATGACCCCATTAACTATGGTAATCCTCGGCGGGTGGATGAATGATTATGGATCATCTTCTCCTTCCAATGAGACTGTAGACAAGGGAGTGATGATAGGGATCATGGGAATTGTTAATGCTACTTGGGCTTTCCCGGGTTGGATTGGTAGCATACTTGTCATTGAGAAAGGAGGCACTGTCGTAGTTGCTAGTATCTGCATCATCTGGAAGGACTTCAACAATCAGCATAAGATCAACCTGGCAAAACAACCCAGACGGCCAATTCAGCTCGGTACATTCCATAGTTTTTTCCATCAGCATGGTAGACTATTCTTTCCAAATGCACCCTCTTGGTTACTACAAGTATCAAAACAAAGACAAAATTATCCTCCCCTATCTCAATGGCGCTTATATCAAATGAATGCACCTGAGTGGAAGCAAGCCTTACTTGGTTGTTTAGGTTCTGATGGCTACAGAGCTATGCAGGCAATTCAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

190

Amino Acids

21.01

Weight (kDa)

8.95

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09951
malus_domestica	MD11G1226000.v1.1 MD11G1226100.v1.1
prunus_persica	Prupe.8G252600_v2.0.a1
pyrus_communis	pycom06g03110 pycom111g03280
rosa_chinensis	RchiOBHm_Chr4g0432461 RchiOBHm_Chr4g0432471
rosa_laevigata	RLG00000002233 RLG00000006839 RLG00000019344 RLG00000028741
rosa_multiflora	Rmu_co8343221.1_g000001 Rmu_sc0001084.1_g000008 Rmu_sc0002350.1_g000019 Rmu_sc0006558.1_g000023 Rmu_sc0008938.1_g000001
rosa_rugosa	Rorug04G0259700 Rorug04G0259700 Rorug04G0259800
rosa_samantha	Rh4AG314500 Rh4AG314600 Rh4BG128600 Rh4BG322300 Rh4CG337400 Rh4CG337500 Rh4DG318000 Rh4DG318100 Rh5DG267300 Rh6BG045900 Rh6BG082300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	171, 397
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	2 cut(s)	151, 200
AcoI	YGGCCR	1 cut(s)	350
AfaI	GTAC	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	310, 566
AjnI	CCWGG	1 cut(s)	330
AleI	CACNNNNGTG	1 cut(s)	502
AluBI	AGCT	3 cut(s)	49, 361, 551
AluI	AGCT	3 cut(s)	49, 361, 551
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	151, 200
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	480
AsuC2I	CCSGG	2 cut(s)	227, 228
AvaI	CYCGRG	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	3 cut(s)	80, 393, 533
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	2 cut(s)	227, 228
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	2 cut(s)	168, 544
BfoI	RGCGCY	1 cut(s)	481
Bme1390I	CCNGG	3 cut(s)	227, 228, 332
BmeT110I	CYCGRG	1 cut(s)	226
BmrFI	CCNGG	3 cut(s)	227, 228, 332
BmsI	GCATC	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	227, 228
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	118, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	118, 226
BseGI	GGATG	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	492
BshFI	GGCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	39, 143, 192, 324
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	493
BspPI	GGATC	2 cut(s)	151, 200
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	118, 226
BssMI	GATC	4 cut(s)	39, 143, 192, 324
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	169, 271
BstC8I	GCNNGC	2 cut(s)	513, 558
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	4 cut(s)	42, 146, 195, 327
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	39, 143, 192, 324
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 218, 358, 557, 566
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	225, 226, 330
BstSFI	CTRYAG	2 cut(s)	168, 544
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	513, 558
CfoI	GCGC	1 cut(s)	480
Cfr9I	CCCGGG	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	2 cut(s)	196, 392
CviJI	RGCY	9 cut(s)	18, 49, 221, 352, 361, 515, 543, 551, 569
CviKI_1	RGCY	9 cut(s)	18, 49, 221, 352, 361, 515, 543, 551, 569
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	4 cut(s)	41, 145, 194, 326
DpnII	GATC	4 cut(s)	39, 143, 192, 324
EaeI	YGGCCR	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	2 cut(s)	199, 395
FalI	AAGNNNNNCTT	4 cut(s)	500, 532, 504, 536
FatI	CATG	2 cut(s)	195, 391
FauI	CCCGC	1 cut(s)	116
FblI	GTMKAC	2 cut(s)	171, 397
FokI	GGATG	1 cut(s)	142
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	479
HaeII	RGCGCY	1 cut(s)	481
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	2 cut(s)	199, 395
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	172, 398
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	2 cut(s)	172, 398
HpyAV	CCTTC	2 cut(s)	165, 295
HpyCH4III	ACNGT	2 cut(s)	169, 271
HpyCH4V	TGCA	5 cut(s)	92, 291, 416, 497, 556
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 218, 358, 557, 566
HpyF3I	CTNAG	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	199, 395
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	39, 143, 192, 324
LmnI	GCTCC	1 cut(s)	6
LpnPI	CCDG	7 cut(s)	240, 283, 317, 344, 358, 513, 542
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	4 cut(s)	41, 145, 194, 326
MboI	GATC	4 cut(s)	39, 143, 192, 324
MboII	GAAGA	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	201, 354, 454, 561
MmeI	TCCRAC	2 cut(s)	61, 212
MnlI	CCTC	5 cut(s)	8, 128, 257, 430, 471
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	2 cut(s)	104, 207
MslI	CAYNNNNRTG	2 cut(s)	390, 502
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	227, 228, 332
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	5 cut(s)	15, 218, 358, 557, 566
NciI	CCSGG	2 cut(s)	227, 228
NdeII	GATC	4 cut(s)	39, 143, 192, 324
NlaIII	CATG	2 cut(s)	199, 395
NmeAIII	GCCGAG	1 cut(s)	99
OliI	CACNNNNGTG	1 cut(s)	502
PctI	GAATGC	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	2 cut(s)	390, 502
SaqAI	TTAA	2 cut(s)	104, 207
Sau3AI	GATC	4 cut(s)	39, 143, 192, 324
ScrFI	CCNGG	3 cut(s)	227, 228, 332
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	6 cut(s)	51, 333, 363, 502, 535, 553
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	2 cut(s)	168, 544
SmaI	CCCGGG	1 cut(s)	228
SmiMI	CAYNNNNRTG	2 cut(s)	390, 502
Sse9I	AATT	4 cut(s)	201, 354, 454, 561
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	3 cut(s)	225, 226, 330
TaaI	ACNGT	2 cut(s)	169, 271
TaqI	TCGA	1 cut(s)	42
TasI	AATT	4 cut(s)	201, 354, 454, 561
Tru1I	TTAA	2 cut(s)	104, 207
Tru9I	TTAA	2 cut(s)	104, 207
TscAI	CASTG	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	146, 506
TspMI	CCCGGG	1 cut(s)	226
TspRI	CASTG	1 cut(s)	274
XmaI	CCCGGG	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	171, 397
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.