Rh4AG314600

Contains the following InterPro domains ATPase, AAA type, core (InterPro IPR003593), ABC transporter-like (InterPro IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro IPR011527), ABC transporter integral membrane type 1 (InterPro IPR017940), ABC transporter, transmembrane domain (InterPro IPR001140), ABC transporter, conserved site (InterPro IPR017871)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004866
Physical Location & Seq
Forward (+)
62485490 .. 62486847
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG314600.1

Sequence Viewer

Length: 366 bp
ATGGGACTTGTTAATCAAGAACTAGTTCTCTTTGCAACATCTATAAAAGAAAACATTCTATTCGGAAAGGAAGGAGCTTCGATGGAAAATGTCACAGATGCAGCCAAGGCAGCAAATGCTCATGACTTCATTGTTAAACTATCCGAAGGATATGAAACTCAAGGTGGTTTGATCGTGATGACTGATGAGAACACTAGTGCAGCTATCTGTGCACGGCTACCTAGTGAAGGCAGTATGTTTCAATCCTTCATTGCAGAGTGTATGTCGTTGCTGATTCGAGGTTTCATAAGTGCCACCGTAGCATTTGCACTTGGATTGATCATTGCATGGAGGTTAGCCATTGTGAACATTGCCACACAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

121

Amino Acids

12.9

Weight (kDa)

4.67

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 242
AhlI ACTAGT 2 cut(s) 22, 194
AluBI AGCT 2 cut(s) 77, 203
AluI AGCT 2 cut(s) 77, 203
Alw21I GWGCWC 1 cut(s) 214
Alw44I GTGCAC 1 cut(s) 210
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 101, 110, 200
Asp700I GAANNNNTTC 2 cut(s) 24, 54
BaeGI GKGCMC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 113, 122, 212
BccI CCATC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 230
BclI TGATCA 1 cut(s) 318
BcuI ACTAGT 2 cut(s) 22, 194
BfaI CTAG 3 cut(s) 23, 195, 222
BisI GCNGC 3 cut(s) 102, 111, 201
BlsI GCNGC 3 cut(s) 103, 112, 202
BmsI GCATC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse3DI GCAATG 3 cut(s) 249, 321, 348
BseDI CCNNGG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 3 cut(s) 249, 321, 348
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 3 cut(s) 113, 122, 212
BsgI GTGCAG 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 214
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 171, 318
BspHI TCATGA 1 cut(s) 121
BsrDI GCAATG 3 cut(s) 249, 321, 348
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 171, 318
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 363
BstENI CCTNNNNNAGG 1 cut(s) 225
BstKTI GATC 2 cut(s) 174, 321
BstMBI GATC 2 cut(s) 171, 318
BstMWI GCNNNNNNNGC 5 cut(s) 107, 110, 116, 209, 299
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 113, 122, 212
CciI TCATGA 1 cut(s) 121
CviAII CATG 2 cut(s) 122, 327
CviJI RGCY 6 cut(s) 77, 104, 203, 217, 338, 361
CviKI_1 RGCY 6 cut(s) 77, 104, 203, 217, 338, 361
DdeI CTNAG 1 cut(s) 363
DpnI GATC 2 cut(s) 173, 320
DpnII GATC 2 cut(s) 171, 318
Eco130I CCWWGG 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 125, 330
FaiI YATR 7 cut(s) 44, 123, 153, 236, 263, 287, 328
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 121, 326
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 3 cut(s) 102, 111, 201
Fsp4HI GCNGC 3 cut(s) 102, 111, 201
FspBI CTAG 3 cut(s) 23, 195, 222
GluI GCNGC 3 cut(s) 102, 111, 201
Hin1II CATG 2 cut(s) 125, 330
HinfI GANTC 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 212, 346
Hpy188I TCNGA 2 cut(s) 65, 145
Hpy188III TCNNGA 3 cut(s) 17, 122, 175
Hpy8I GTNNAC 2 cut(s) 212, 346
HpyAV CCTTC 4 cut(s) 65, 140, 221, 256
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 7 cut(s) 35, 101, 200, 212, 254, 308, 326
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 110, 116, 209, 299
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 2 cut(s) 125, 330
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 2 cut(s) 171, 318
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 3 cut(s) 113, 122, 212
LweI GCATC 1 cut(s) 88
MaeI CTAG 3 cut(s) 23, 195, 222
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 173, 320
MboI GATC 2 cut(s) 171, 318
MhlI GDGCHC 1 cut(s) 214
MnlI CCTC 2 cut(s) 272, 324
MroXI GAANNNNTTC 2 cut(s) 24, 54
MseI TTAA 2 cut(s) 12, 135
MwoI GCNNNNNNNGC 5 cut(s) 107, 110, 116, 209, 299
NdeII GATC 2 cut(s) 171, 318
NlaIII CATG 2 cut(s) 125, 330
NmuCI GTSAC 1 cut(s) 91
PagI TCATGA 1 cut(s) 121
PdmI GAANNNNTTC 2 cut(s) 24, 54
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 3 cut(s) 103, 112, 202
SaqAI TTAA 2 cut(s) 12, 135
SatI GCNGC 3 cut(s) 102, 111, 201
Sau3AI GATC 2 cut(s) 171, 318
SduI GDGCHC 1 cut(s) 214
SetI ASST 6 cut(s) 79, 166, 205, 223, 283, 335
SfaNI GCATC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
SpeI ACTAGT 2 cut(s) 22, 194
SspMI CTAG 3 cut(s) 23, 195, 222
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 80, 277
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 2 cut(s) 12, 135
Tru9I TTAA 2 cut(s) 12, 135
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 3 cut(s) 101, 110, 200
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 4 cut(s) 118, 168, 238, 274
VneI GTGCAC 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 225
XmnI GAANNNNTTC 2 cut(s) 24, 54
XspI CTAG 3 cut(s) 23, 195, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.