Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Forward (+)

11256117 .. 11256856

Gene Structure 740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1144700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCAAGAGTTGTGGTCGATAGCTCTAATAATTGGAGGTGGTATAGCTAATTTCACAGACGTAGCTGCTACATTCAGTGGAATTATTAGGGCCCTAAGGGAGAAGGAATCCAAGCTAAAAGCGGCAAGAATGCATATATTTGTGAGAAGGGGCGGTCCAAATTATCAAACTGGTTTGGCAAAGATGCGTGCTTTGGGGGAAGAACTCGGAGTTCCTCTTGAGGTTTATGGCCCTGAGGCAACAATGACCGGAATTTGCAAGCAAGCAATTGAGTGCATCGTGGATGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

98

Amino Acids

10.49

Weight (kDa)

6.57

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	8 - 91	6e-37	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	122, 153
AcsI	RAATTY	1 cut(s)	252
AluBI	AGCT	5 cut(s)	23, 47, 65, 115, 290
AluI	AGCT	5 cut(s)	23, 47, 65, 115, 290
AoxI	GGCC	2 cut(s)	90, 229
ApaI	GGGCCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	252
AspS9I	GGNCC	4 cut(s)	90, 91, 155, 230
AvaII	GGWCC	1 cut(s)	155
AxyI	CCTNAGG	2 cut(s)	95, 234
BaeGI	GKGCMC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	66, 123
BlsI	GCNGC	2 cut(s)	67, 124
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	4 cut(s)	90, 91, 155, 230
BmiI	GGNNCC	1 cut(s)	92
BmsI	GCATC	2 cut(s)	174, 285
BpuEI	CTTGAG	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	175
Bse21I	CCTNAGG	2 cut(s)	95, 234
BseGI	GGATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	52
BshFI	GGCC	2 cut(s)	92, 231
BsiSI	CCGG	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	92, 231
Bsp120I	GGGCCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	94
BspACI	CCGC	2 cut(s)	122, 153
BspANI	GGCC	2 cut(s)	92, 231
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	189, 260, 264
BstDEI	CTNAG	2 cut(s)	95, 234
BstF5I	GGATG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	52
Bsu36I	CCTNAGG	2 cut(s)	95, 234
BsuRI	GGCC	2 cut(s)	92, 231
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	3 cut(s)	189, 260, 264
Cfr13I	GGNCC	4 cut(s)	90, 91, 155, 230
CspCI	CAANNNNNGTGG	1 cut(s)	28
CviJI	RGCY	7 cut(s)	23, 47, 65, 92, 115, 231, 290
CviKI_1	RGCY	7 cut(s)	23, 47, 65, 92, 115, 231, 290
DdeI	CTNAG	2 cut(s)	95, 234
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	155
Eco81I	CCTNAGG	2 cut(s)	95, 234
EcoO109I	RGGNCCY	2 cut(s)	90, 91
EcoT22I	ATGCAT	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	94
FaiI	YATR	4 cut(s)	44, 135, 137, 228
Fnu4HI	GCNGC	2 cut(s)	66, 123
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	2 cut(s)	66, 123
GluI	GCNGC	2 cut(s)	66, 123
HaeIII	GGCC	2 cut(s)	92, 231
HapII	CCGG	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	97, 141
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	4, 133, 258, 276
HpyF3I	CTNAG	2 cut(s)	95, 234
HpySE526I	ACGT	1 cut(s)	60
LpnPI	CCDG	3 cut(s)	156, 246, 262
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	2 cut(s)	174, 285
MaeII	ACGT	1 cut(s)	60
MboII	GAAGA	1 cut(s)	212
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	6 cut(s)	30, 49, 81, 160, 252, 267
MnlI	CCTC	4 cut(s)	29, 214, 225, 229
Mph1103I	ATGCAT	1 cut(s)	135
MseI	TTAA	1 cut(s)	292
MspI	CCGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	135
NlaIV	GGNNCC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	135
PctI	GAATGC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	67, 124
PspN4I	GGNNCC	1 cut(s)	92
PspOMI	GGGCCC	1 cut(s)	90
PspPI	GGNCC	4 cut(s)	90, 91, 155, 230
SaqAI	TTAA	1 cut(s)	292
SatI	GCNGC	2 cut(s)	66, 123
Sau96I	GGNCC	4 cut(s)	90, 91, 155, 230
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	8 cut(s)	25, 40, 49, 63, 67, 117, 225, 292
SfaNI	GCATC	2 cut(s)	174, 285
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	6 cut(s)	30, 49, 81, 160, 252, 267
SsiI	CCGC	2 cut(s)	122, 153
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	17
TasI	AATT	6 cut(s)	30, 49, 81, 160, 252, 267
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	1 cut(s)	65
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.