Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

34566573 .. 34599004

Gene Structure 32432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG293600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTGGGAGGATGGTTTTGCCTTGCTGGTTTTGTGTGCCTATGTCTGTTCATCCAGAGAACAGCTCCTTCAGATCGGCTGTCAGCCTCTCTGCATGTTAAGACCATATTTGTCCCAACGGGAGCTTCCCTTTCACCAGATGTATCTGCTCCACTTGTTGCCACCCTTCCCTTGGAGCGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCCTTGTAATTGGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTTAAGGTTGATAGGATGCATCTTTATGTTAGGGGAGGAGGTCCCAACTACCAGAGGGGACTCGCAAAAATGAGGGCACTTGTAGAGGAAATTGGCCTCCCTATTAAGGTAAGCAATGTTTCTGAAATCTCTATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

147

Amino Acids

15.84

Weight (kDa)

9.15

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	61 - 139	2.9e-27	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	172, 409
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	265, 286, 440
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AluBI	AGCT	4 cut(s)	65, 125, 254, 304
AluI	AGCT	4 cut(s)	65, 125, 254, 304
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	346
BmsI	GCATC	2 cut(s)	309, 331
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 409
Bse3DI	GCAATG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	3 cut(s)	17, 51, 324
BseLI	CCNNNNNNNGG	2 cut(s)	172, 409
BseMI	GCAATG	1 cut(s)	424
BseRI	GAGGAG	2 cut(s)	240, 354
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	399
BslFI	GGGAC	3 cut(s)	98, 330, 375
BslI	CCNNNNNNNGG	2 cut(s)	172, 409
BsmFI	GGGAC	3 cut(s)	98, 330, 375
BsnI	GGCC	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	214, 382
Bsp143I	GATC	2 cut(s)	73, 190
BspANI	GGCC	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	73, 190
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	17, 51, 324
BstKTI	GATC	2 cut(s)	76, 193
BstMBI	GATC	2 cut(s)	73, 190
BstNSI	RCATGY	1 cut(s)	98
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	399
BtsCI	GGATG	3 cut(s)	17, 51, 324
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	344
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	9 cut(s)	65, 79, 86, 125, 212, 254, 281, 304, 399
CviKI_1	RGCY	9 cut(s)	65, 79, 86, 125, 212, 254, 281, 304, 399
DpnI	GATC	2 cut(s)	75, 192
DpnII	GATC	2 cut(s)	73, 190
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	1 cut(s)	98
FaiI	YATR	4 cut(s)	43, 96, 107, 330
FaqI	GGGAC	3 cut(s)	98, 330, 375
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	3 cut(s)	24, 38, 331
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	399
Hin1II	CATG	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	1 cut(s)	363
HphI	GGTGA	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	73, 190, 427
Hpy188III	TCNNGA	2 cut(s)	55, 194
HpyAV	CCTTC	4 cut(s)	78, 176, 280, 286
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	94, 182, 257, 322
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	73, 190
LmnI	GCTCC	4 cut(s)	70, 122, 154, 175
LpnPI	CCDG	5 cut(s)	12, 68, 150, 207, 368
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	309, 331
MalI	GATC	2 cut(s)	75, 192
MboI	GATC	2 cut(s)	73, 190
MhlI	GDGCHC	2 cut(s)	214, 382
MluCI	AATT	3 cut(s)	219, 231, 393
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	9 cut(s)	97, 218, 221, 332, 335, 351, 369, 382, 410
Mph1103I	ATGCAT	1 cut(s)	324
MseI	TTAA	3 cut(s)	99, 306, 408
MslI	CAYNNNNRTG	1 cut(s)	327
MspCI	CTTAAG	1 cut(s)	305
NdeII	GATC	2 cut(s)	73, 190
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	324
NspI	RCATGY	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PpuMI	RGGWCCY	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	99, 306, 408
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	73, 190
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	357
SduI	GDGCHC	2 cut(s)	214, 382
SetI	ASST	7 cut(s)	67, 127, 256, 306, 312, 346, 414
SfaNI	GCATC	2 cut(s)	309, 331
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	219, 231, 393
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	203
TasI	AATT	3 cut(s)	219, 231, 393
Tru1I	TTAA	3 cut(s)	99, 306, 408
Tru9I	TTAA	3 cut(s)	99, 306, 408
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	344
XceI	RCATGY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
Zsp2I	ATGCAT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.