Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

79851906 .. 79867133

Gene Structure 15228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG565200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAAGAAAGTTAGGACCATATTTGTCCCAACGGGAGCTTCACTTTCACCAGATGTATCTGCTCCACTTGTTGCCACCCTTCCCTTGGAGATTAAGAGCAAAATTGAGGAGTTTATCAAGTCTCGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCCTTGTAATTAGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTTAAGGTTGACAGGATGCATCTTTATGTTAGGAGGGGAGGTCCCAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

100

Amino Acids

11.1

Weight (kDa)

10.13

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	42 - 100	1e-18	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	211, 232
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	3 cut(s)	38, 200, 250
AluI	AGCT	3 cut(s)	38, 200, 250
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	15, 290
AsuHPI	GGTGA	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	15, 290
BanII	GRGCYC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	301
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme18I	GGWCC	2 cut(s)	15, 290
BmgT120I	GGNCC	2 cut(s)	15, 290
BmiI	GGNNCC	1 cut(s)	292
BmsI	GCATC	2 cut(s)	255, 277
BsaJI	CCNNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	122, 186
BseXI	GCAGC	1 cut(s)	187
BslFI	GGGAC	2 cut(s)	11, 276
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	2 cut(s)	11, 276
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	136
BssSI	CACGAG	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	15, 290
CviJI	RGCY	5 cut(s)	38, 158, 200, 227, 250
CviKI_1	RGCY	5 cut(s)	38, 158, 200, 227, 250
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	15, 290
EcoO109I	RGGNCCY	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	84
FaiI	YATR	2 cut(s)	20, 276
FaqI	GGGAC	2 cut(s)	11, 276
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	301
GluI	GCNGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	248
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	3 cut(s)	89, 226, 232
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	3 cut(s)	128, 203, 268
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	35, 67
LpnPI	CCDG	3 cut(s)	63, 153, 247
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	255, 277
MaeI	CTAG	1 cut(s)	301
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	3 cut(s)	102, 165, 177
MnlI	CCTC	5 cut(s)	100, 164, 167, 276, 281
Mph1103I	ATGCAT	1 cut(s)	270
MseI	TTAA	2 cut(s)	93, 252
MslI	CAYNNNNRTG	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	251
NdeII	GATC	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	270
PkrI	GCNGC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	15, 290
PspPPI	RGGWCCY	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	93, 252
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	2 cut(s)	15, 290
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	5 cut(s)	40, 202, 252, 258, 292
SfaNI	GCATC	2 cut(s)	255, 277
SinI	GGWCC	2 cut(s)	15, 290
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	102, 165, 177
SspMI	CTAG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	149
TasI	AATT	3 cut(s)	102, 165, 177
Tru1I	TTAA	2 cut(s)	93, 252
Tru9I	TTAA	2 cut(s)	93, 252
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	15, 290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	1 cut(s)	301
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.