Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011990.1

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

12646 .. 16169

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011990.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ctggcactaaagaaatcagttagcattgcatcttcctacctaactcccacaaacccaacaccaaaacccaactcttctttcaaggtgagaaatggcacgcaagaagatccgagagtacgactccaagagattaagagcgaaattgaggactttatcaagtccgtatttgctctatttcaagatctcgacttcacttttctggagatgaatccttttgcattggttgatggaaagccatatcctttggatatgagaggcgagctggatgacactgctgctttcaagaacttcaaaaagtggggcaatattgaatttccaatgccatttggaagagttatgagtcctacagaaaagtttattcacgggctagatgaaaagacaagtgcatctttgaaatttacagttctgaaccctaagggacgaatttggactatggttgctggaggaggtgcaagtgttatttatgcagacacggttggtgatcttggctttgctaatgagctcggaaactatgctgaatatagtggagcaccaaatgaagaggaggtattgcagtatgccagagttgtgattgattgtgcaacttctgatcctgatggccgtaagagagcccttgtaattggagggggaattgctaacttcactgatgtagctgcaacattcaatggcattattagagccttgaaggagaaggaatcaaagcttaaagctgctaggatgcatctttatgtcaggagaggaggtcccaactaccagaggggacttgcaaaaatgagggcacttgcagaggaaattggcctccctattgaggtctatggtcctgaagcaacaatgactggtatttgcaagcaggcaattcagtgcatcagtgctgctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

293

Amino Acids

32.12

Weight (kDa)

7.81

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	101, 584
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	3 cut(s)	311, 395, 423
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	808
AgsI	TTSAA	8 cut(s)	82, 179, 283, 292, 311, 394, 664, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	5 cut(s)	262, 502, 653, 703, 710
AluI	AGCT	5 cut(s)	262, 502, 653, 703, 710
Alw21I	GWGCWC	2 cut(s)	504, 532
AlwI	GGATC	2 cut(s)	101, 584
AoxI	GGCC	2 cut(s)	598, 796
ApeKI	GCWGC	5 cut(s)	275, 653, 710, 872, 875
ApoI	RAATTY	3 cut(s)	311, 395, 423
AspS9I	GGNCC	2 cut(s)	743, 818
AsuHPI	GGTGA	2 cut(s)	97, 491
AvaII	GGWCC	2 cut(s)	743, 818
AxyI	CCTNAGG	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	781
BanII	GRGCYC	2 cut(s)	504, 613
Bbv12I	GWGCWC	2 cut(s)	504, 532
BbvI	GCAGC	5 cut(s)	262, 640, 697, 859, 862
BccI	CCATC	2 cut(s)	221, 590
BceAI	ACGGC	1 cut(s)	585
BfaI	CTAG	2 cut(s)	368, 714
BfmI	CTRYAG	1 cut(s)	345
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	5 cut(s)	276, 654, 711, 873, 876
BlsI	GCNGC	5 cut(s)	277, 655, 712, 874, 877
Bme18I	GGWCC	2 cut(s)	743, 818
BmgT120I	GGNCC	2 cut(s)	743, 818
BmiI	GGNNCC	1 cut(s)	745
BmsI	GCATC	5 cut(s)	38, 395, 708, 730, 873
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	2 cut(s)	221, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	727, 757
Bsc4I	CCNNNNNNNGG	1 cut(s)	808
Bse1I	ACTGG	1 cut(s)	841
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	271, 723
BseLI	CCNNNNNNNGG	1 cut(s)	808
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	841
BseRI	GAGGAG	3 cut(s)	459, 557, 753
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	5 cut(s)	262, 640, 697, 859, 862
BshFI	GGCC	2 cut(s)	600, 798
BsiHKAI	GWGCWC	2 cut(s)	504, 532
BslFI	GGGAC	3 cut(s)	432, 729, 774
BslI	CCNNNNNNNGG	1 cut(s)	808
BsmFI	GGGAC	3 cut(s)	432, 729, 774
BsnI	GGCC	2 cut(s)	600, 798
Bsp1286I	GDGCHC	4 cut(s)	504, 532, 613, 781
Bsp143I	GATC	4 cut(s)	106, 181, 481, 589
BspANI	GGCC	2 cut(s)	600, 798
BspLI	GGNNCC	1 cut(s)	745
BspPI	GGATC	2 cut(s)	101, 584
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	841
BssMI	GATC	4 cut(s)	106, 181, 481, 589
Bst4CI	ACNGT	2 cut(s)	403, 475
Bst6I	CTCTTC	3 cut(s)	79, 325, 534
BstC8I	GCNNGC	4 cut(s)	98, 260, 848, 852
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	271, 723
BstKTI	GATC	4 cut(s)	109, 184, 484, 592
BstMBI	GATC	4 cut(s)	106, 181, 481, 589
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	781
BstV1I	GCAGC	5 cut(s)	262, 640, 697, 859, 862
BstX2I	RGATCY	2 cut(s)	106, 181
BstYI	RGATCY	2 cut(s)	106, 181
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	600, 798
BtsCI	GGATG	2 cut(s)	271, 723
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	4 cut(s)	270, 642, 866, 874
Cac8I	GCNNGC	4 cut(s)	98, 260, 848, 852
Cfr13I	GGNCC	2 cut(s)	743, 818
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	1 cut(s)	879
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	4 cut(s)	108, 183, 483, 591
DpnII	GATC	4 cut(s)	106, 181, 481, 589
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	3 cut(s)	79, 325, 534
EarI	CTCTTC	3 cut(s)	79, 325, 534
Ecl136II	GAGCTC	1 cut(s)	502
Eco24I	GRGCYC	2 cut(s)	504, 613
Eco47I	GGWCC	2 cut(s)	743, 818
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	843
Eco81I	CCTNAGG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	743
EcoT22I	ATGCAT	1 cut(s)	723
EcoT38I	GRGCYC	2 cut(s)	504, 613
FaeI	CATG	1 cut(s)	882
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FaqI	GGGAC	3 cut(s)	432, 729, 774
FatI	CATG	1 cut(s)	878
Fnu4HI	GCNGC	5 cut(s)	276, 654, 711, 873, 876
FokI	GGATG	2 cut(s)	278, 730
FriOI	GRGCYC	2 cut(s)	504, 613
Fsp4HI	GCNGC	5 cut(s)	276, 654, 711, 873, 876
FspBI	CTAG	2 cut(s)	368, 714
GluI	GCNGC	5 cut(s)	276, 654, 711, 873, 876
GsuI	CTGGAG	2 cut(s)	221, 462
HaeIII	GGCC	2 cut(s)	600, 798
Hin1II	CATG	1 cut(s)	882
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	4 cut(s)	120, 208, 340, 695
HphI	GGTGA	2 cut(s)	97, 491
Hpy188I	TCNGA	4 cut(s)	111, 408, 506, 589
Hpy188III	TCNNGA	7 cut(s)	179, 185, 200, 283, 593, 733, 821
HpyAV	CCTTC	2 cut(s)	679, 685
HpyCH4III	ACNGT	2 cut(s)	403, 475
HpyF3I	CTNAG	1 cut(s)	414
Hsp92II	CATG	1 cut(s)	882
Kzo9I	GATC	4 cut(s)	106, 181, 481, 589
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	5 cut(s)	262, 640, 697, 859, 862
LweI	GCATC	5 cut(s)	38, 395, 708, 730, 873
MaeI	CTAG	2 cut(s)	368, 714
MalI	GATC	4 cut(s)	108, 183, 483, 591
MboI	GATC	4 cut(s)	106, 181, 481, 589
MboII	GAAGA	5 cut(s)	24, 66, 116, 342, 551
MflI	RGATCY	2 cut(s)	106, 181
MhlI	GDGCHC	4 cut(s)	504, 532, 613, 781
MluCI	AATT	8 cut(s)	141, 311, 395, 423, 618, 630, 792, 855
MlyI	GAGTC	2 cut(s)	114, 349
Mph1103I	ATGCAT	1 cut(s)	723
MseI	TTAA	2 cut(s)	132, 705
MslI	CAYNNNNRTG	1 cut(s)	726
NdeII	GATC	4 cut(s)	106, 181, 481, 589
NlaIII	CATG	1 cut(s)	882
NlaIV	GGNNCC	1 cut(s)	745
NsiI	ATGCAT	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	208, 695
PkrI	GCNGC	5 cut(s)	277, 655, 712, 874, 877
PleI	GAGTC	2 cut(s)	114, 348
PpsI	GAGTC	2 cut(s)	114, 348
PpuMI	RGGWCCY	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	743
PspN4I	GGNNCC	1 cut(s)	745
PspPI	GGNCC	2 cut(s)	743, 818
PspPPI	RGGWCCY	1 cut(s)	743
PsuI	RGATCY	2 cut(s)	106, 181
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	726
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	132, 705
SatI	GCNGC	5 cut(s)	276, 654, 711, 873, 876
Sau3AI	GATC	4 cut(s)	106, 181, 481, 589
Sau96I	GGNCC	2 cut(s)	743, 818
SchI	GAGTC	2 cut(s)	114, 349
SduI	GDGCHC	4 cut(s)	504, 532, 613, 781
SfaNI	GCATC	5 cut(s)	38, 395, 708, 730, 873
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	2 cut(s)	743, 818
SmiMI	CAYNNNNRTG	1 cut(s)	726
Sse9I	AATT	8 cut(s)	141, 311, 395, 423, 618, 630, 792, 855
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	2 cut(s)	368, 714
SstI	GAGCTC	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	403, 475
TaqI	TCGA	1 cut(s)	186
TasI	AATT	8 cut(s)	141, 311, 395, 423, 618, 630, 792, 855
TfiI	GAWTC	2 cut(s)	208, 695
Tru1I	TTAA	2 cut(s)	132, 705
Tru9I	TTAA	2 cut(s)	132, 705
TscAI	CASTG	4 cut(s)	277, 649, 866, 874
TseI	GCWGC	5 cut(s)	275, 653, 710, 872, 875
TspDTI	ATGAA	3 cut(s)	221, 387, 552
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	4 cut(s)	277, 649, 866, 874
VpaK11BI	GGWCC	2 cut(s)	743, 818
XapI	RAATTY	3 cut(s)	311, 395, 423
XspI	CTAG	2 cut(s)	368, 714
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.