Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Forward (+)

26289861 .. 26290928

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGAGCTTCCGTTTCACCAGATGTATCTGCTCCACTTGTTGCAACCCTTCCCTTGCAGTGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCCTTATAATTGGAGGAGGAATTGCTAACTTCACTGATGAAACAAAGCTTAAGGCTGATAGGATGCATCTTTATGTTAGGAGAGGAGGTCCCAACTACCAGAGGGGACTCGCAAAAATGAGGGCAATTGCAAAGGAAATTGGCCTCCCTATTGAGGTCTATGGTCCTGAAGCAACAATGACTGGTATTTGCAAGCATGCAATCCAGTGCATCACTGCTGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

107

Amino Acids

11.27

Weight (kDa)

8.91

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	19 - 100	3.9e-23	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AclWI	GGATC	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	247
AflII	CTTAAG	1 cut(s)	143
AluBI	AGCT	2 cut(s)	8, 142
AluI	AGCT	2 cut(s)	8, 142
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	182, 257
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	182, 257
BanII	GRGCYC	1 cut(s)	97
BfrI	CTTAAG	1 cut(s)	143
Bme18I	GGWCC	2 cut(s)	182, 257
BmgT120I	GGNCC	2 cut(s)	182, 257
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	3 cut(s)	147, 169, 312
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	280, 298
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseNI	ACTGG	2 cut(s)	280, 298
BseRI	GAGGAG	2 cut(s)	123, 192
BshFI	GGCC	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	168, 213
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	168, 213
BsnI	GGCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	280, 298
BssMI	GATC	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	86
BstAFI	CTTAAG	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	287, 291
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	2 cut(s)	65, 306
BtsIMutI	CAGTG	4 cut(s)	65, 126, 305, 306
Cac8I	GCNNGC	2 cut(s)	287, 291
Cfr13I	GGNCC	2 cut(s)	182, 257
CviAII	CATG	2 cut(s)	290, 318
CviJI	RGCY	5 cut(s)	8, 95, 142, 149, 237
CviKI_1	RGCY	5 cut(s)	8, 95, 142, 149, 237
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	182, 257
Eco57I	CTGAAG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	2 cut(s)	293, 321
FaiI	YATR	5 cut(s)	101, 168, 255, 291, 319
FaqI	GGGAC	2 cut(s)	168, 213
FatI	CATG	2 cut(s)	289, 317
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	293, 321
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	1 cut(s)	201
HphI	GGTGA	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	77, 260
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	9 cut(s)	44, 58, 65, 160, 224, 285, 293, 303, 317
Hsp92II	CATG	2 cut(s)	293, 321
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	5, 37
LpnPI	CCDG	6 cut(s)	33, 90, 206, 261, 273, 311
LweI	GCATC	3 cut(s)	147, 169, 312
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	4 cut(s)	102, 114, 219, 231
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	8 cut(s)	101, 104, 170, 173, 189, 207, 241, 248
Mph1103I	ATGCAT	1 cut(s)	162
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	219
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	293, 321
NlaIV	GGNNCC	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	182, 257
PspPPI	RGGWCCY	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	2 cut(s)	182, 257
SchI	GAGTC	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	4 cut(s)	10, 144, 184, 252
SfaNI	GCATC	3 cut(s)	147, 169, 312
SinI	GGWCC	2 cut(s)	182, 257
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	4 cut(s)	102, 114, 219, 231
TaaI	ACNGT	1 cut(s)	86
TasI	AATT	4 cut(s)	102, 114, 219, 231
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	4 cut(s)	65, 133, 305, 313
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	4 cut(s)	65, 133, 305, 313
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	182, 257
XceI	RCATGY	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.