Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

33302072 .. 33307888

Gene Structure 5817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTGCAGATGATATGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTCGTCTCCAAGGGGGCTCATGTGATAGTCCATATTTATGCCTTAAGGAACCTGAAAGTGCCGCCTTCAATGTTAAAGAGGAACTTCGTCCTCCAGCACAAAGACCTTTGAGGGACCCACCAAAATGCGAAATGCTGAAACTTTTAGACTGGAAAACGGGATCAGAGAGTTCTGTTGTAGGACTTCAAGTTCCTCAATCTGCTGTGACATCGTATTTCAAAGAGCAATCTTCTGGTAAGTGGGAACTCCAATTACCAGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTAGAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAGACAGTGGCACAAGCTTTTTGTGAGGCAGTTAAGACCATATTTGTCCCAACGGGAGCTTCTCTTTCACCAGATGTATCTGCTCCACTTGTTGCAACTCTTCCCTTGGAGTGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCCTTGTAATGGGAGGAGGAATTGCTAACTTCACTGATGCAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTAAAGGCTGATAGGATGCATCTTTATGTTAGGAGAGGAGGTCCCAACTACCAGAGGGGACTTGCAAAAATGAGGGCACTTGCAGAGGAAATTGGCCTCCCTATTGAGGTCTATGGTCCTGAAGCAACAGTGGCTGGTATTTGCAAGCAGGCAATCCAGTGCATCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

268

Amino Acids

29.03

Weight (kDa)

7.5

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	168 - 264	7e-35	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	2 cut(s)	232, 515
AcuI	CTGAAG	1 cut(s)	774
AfiI	CCNNNNNNNGG	3 cut(s)	40, 550, 739
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	5 cut(s)	133, 251, 283, 595, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	439, 471
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	5 cut(s)	40, 413, 455, 584, 634
AluI	AGCT	5 cut(s)	40, 413, 455, 584, 634
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	232, 515
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	2 cut(s)	353, 727
ApeKI	GCWGC	3 cut(s)	5, 581, 584
AspS9I	GGNCC	3 cut(s)	178, 674, 749
AsuHPI	GGTGA	1 cut(s)	456
AvaII	GGWCC	3 cut(s)	178, 674, 749
BaeGI	GKGCMC	1 cut(s)	712
BanII	GRGCYC	2 cut(s)	83, 544
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	571, 593
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	4 cut(s)	6, 126, 582, 585
BlsI	GCNGC	4 cut(s)	7, 127, 583, 586
Bme18I	GGWCC	3 cut(s)	178, 674, 749
BmgT120I	GGNCC	3 cut(s)	178, 674, 749
BmiI	GGNNCC	4 cut(s)	114, 179, 180, 676
BmsI	GCATC	3 cut(s)	568, 639, 661
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	73, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 550, 739
Bse1I	ACTGG	3 cut(s)	218, 379, 790
BseDI	CCNNGG	2 cut(s)	73, 501
BseGI	GGATG	1 cut(s)	654
BseLI	CCNNNNNNNGG	3 cut(s)	40, 550, 739
BseNI	ACTGG	3 cut(s)	218, 379, 790
BseRI	GAGGAG	2 cut(s)	570, 684
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	2 cut(s)	571, 593
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	2 cut(s)	355, 729
BslFI	GGGAC	4 cut(s)	191, 428, 660, 705
BslI	CCNNNNNNNGG	3 cut(s)	40, 550, 739
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	4 cut(s)	191, 428, 660, 705
BsnI	GGCC	2 cut(s)	355, 729
Bsp1286I	GDGCHC	3 cut(s)	83, 544, 712
Bsp143I	GATC	2 cut(s)	224, 520
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	355, 729
BspLI	GGNNCC	4 cut(s)	114, 179, 180, 676
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	2 cut(s)	232, 515
BspTI	CTTAAG	1 cut(s)	107
BsrI	ACTGG	3 cut(s)	218, 379, 790
BssECI	CCNNGG	2 cut(s)	73, 501
BssMI	GATC	2 cut(s)	224, 520
BssT1I	CCWWGG	2 cut(s)	73, 501
Bst4CI	ACNGT	4 cut(s)	331, 403, 533, 763
Bst6I	CTCTTC	1 cut(s)	501
BstAFI	CTTAAG	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	779, 783
BstF5I	GGATG	1 cut(s)	654
BstKTI	GATC	2 cut(s)	227, 523
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	224, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	2 cut(s)	571, 593
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	355, 729
BtsCI	GGATG	1 cut(s)	654
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	7 cut(s)	327, 372, 408, 573, 768, 797, 798
Cac8I	GCNNGC	2 cut(s)	779, 783
CaiI	CAGNNNCTG	1 cut(s)	767
Cfr13I	GGNCC	3 cut(s)	178, 674, 749
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	1 cut(s)	84
DpnI	GATC	2 cut(s)	226, 522
DpnII	GATC	2 cut(s)	224, 520
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	73, 501
Eco24I	GRGCYC	2 cut(s)	83, 544
Eco47I	GGWCC	3 cut(s)	178, 674, 749
Eco57I	CTGAAG	1 cut(s)	774
EcoO109I	RGGNCCY	2 cut(s)	178, 674
EcoT14I	CCWWGG	2 cut(s)	73, 501
EcoT22I	ATGCAT	1 cut(s)	654
EcoT38I	GRGCYC	2 cut(s)	83, 544
ErhI	CCWWGG	2 cut(s)	73, 501
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	1 cut(s)	87
FaiI	YATR	8 cut(s)	17, 85, 97, 103, 437, 660, 747, 805
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	4 cut(s)	191, 428, 660, 705
FatI	CATG	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	6, 126, 582, 585
FokI	GGATG	1 cut(s)	661
FriOI	GRGCYC	2 cut(s)	83, 544
Fsp4HI	GCNGC	4 cut(s)	6, 126, 582, 585
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	4 cut(s)	6, 126, 582, 585
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	355, 729
Hin1II	CATG	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	2 cut(s)	59, 341
HphI	GGTGA	1 cut(s)	456
Hpy188I	TCNGA	2 cut(s)	229, 520
Hpy188III	TCNNGA	2 cut(s)	524, 752
HpyAV	CCTTC	3 cut(s)	139, 610, 616
HpyCH4III	ACNGT	4 cut(s)	331, 403, 533, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
Hsp92II	CATG	1 cut(s)	87
KflI	GGGWCCC	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	224, 520
LmnI	GCTCC	3 cut(s)	390, 452, 484
Lsp1109I	GCAGC	2 cut(s)	571, 593
LweI	GCATC	3 cut(s)	568, 639, 661
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	268, 367
MalI	GATC	2 cut(s)	226, 522
MboI	GATC	2 cut(s)	224, 520
MboII	GAAGA	3 cut(s)	285, 409, 488
MhlI	GDGCHC	3 cut(s)	83, 544, 712
MluCI	AATT	4 cut(s)	25, 314, 561, 723
Mph1103I	ATGCAT	1 cut(s)	654
MseI	TTAA	3 cut(s)	108, 138, 429
MslI	CAYNNNNRTG	3 cut(s)	100, 187, 657
MspA1I	CMGCKG	1 cut(s)	584
MspCI	CTTAAG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	764
NdeII	GATC	2 cut(s)	224, 520
NlaIII	CATG	1 cut(s)	87
NlaIV	GGNNCC	4 cut(s)	114, 179, 180, 676
NmuCI	GTSAC	2 cut(s)	268, 367
NsiI	ATGCAT	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	59, 341
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	7, 127, 583, 586
PpuMI	RGGWCCY	2 cut(s)	178, 674
Psp5II	RGGWCCY	2 cut(s)	178, 674
PspFI	CCCAGC	1 cut(s)	40
PspN4I	GGNNCC	4 cut(s)	114, 179, 180, 676
PspPI	GGNCC	3 cut(s)	178, 674, 749
PspPPI	RGGWCCY	2 cut(s)	178, 674
PsrI	GAACNNNNNNTAC	2 cut(s)	300, 332
PstI	CTGCAG	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	767
PsyI	GACNNNGTC	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	584
RseI	CAYNNNNRTG	3 cut(s)	100, 187, 657
SaqAI	TTAA	3 cut(s)	108, 138, 429
SatI	GCNGC	4 cut(s)	6, 126, 582, 585
Sau3AI	GATC	2 cut(s)	224, 520
Sau96I	GGNCC	3 cut(s)	178, 674, 749
SduI	GDGCHC	3 cut(s)	83, 544, 712
SetI	ASST	9 cut(s)	42, 118, 172, 415, 457, 586, 636, 676, 744
SfaNI	GCATC	3 cut(s)	568, 639, 661
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	3 cut(s)	178, 674, 749
SmiMI	CAYNNNNRTG	3 cut(s)	100, 187, 657
SmlI	CTYRAG	2 cut(s)	35, 107
SmoI	CTYRAG	2 cut(s)	35, 107
Sse9I	AATT	4 cut(s)	25, 314, 561, 723
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	357
StyI	CCWWGG	2 cut(s)	73, 501
TaaI	ACNGT	4 cut(s)	331, 403, 533, 763
TaqI	TCGA	1 cut(s)	385
TasI	AATT	4 cut(s)	25, 314, 561, 723
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	59, 341
Tru1I	TTAA	3 cut(s)	108, 138, 429
Tru9I	TTAA	3 cut(s)	108, 138, 429
TscAI	CASTG	7 cut(s)	334, 379, 408, 580, 768, 797, 805
TseFI	GTSAC	2 cut(s)	268, 367
TseI	GCWGC	3 cut(s)	5, 581, 584
Tsp45I	GTSAC	2 cut(s)	268, 367
TspRI	CASTG	7 cut(s)	334, 379, 408, 580, 768, 797, 805
Tth111I	GACNNNGTC	1 cut(s)	329
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	178, 674, 749
XspI	CTAG	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.