Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

500873 .. 505481

Gene Structure 4609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG006000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCCAGTTCCACTAGTGAGCATTCCGAGGAATTGACATTGCGGAGAATTGGGATAAGGTTAAGACCATATTTGTCCCAACGGGAGCTTCCCTTTCACCAGATGTATCTGCTCCACTTGTTGCCACCCTTCCCTTGGAGATTAAGAGCAAAATTGAGGACTTTATCAAGTCTGTATTTGCTCTATTTCAAGCGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCCTTGTAATTGGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTTAAGGTTGATAGGATACATCTTTATGTTAGGAGAGGAGGTCCCAACAACCAGAAGGGACTCGCAAAAATGAGGGCACTTGCAGAGGAAATTGGCCTCCCTATTGAGGTCTATGGTCCTGAAGCAACAATGACTGGTTATTGCAAGCAGGCAATCCAGTGCATCACTGCTGCTGCATGGCAACGTTATATGAAGATGGTTGCTTTCTTCTTGTCTATCTCACCTGTTTCTTCTGTGGCGAGTTTCAATATCTCCATACCTTGTACCAATTTCTATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

199

Amino Acids

22.6

Weight (kDa)

9.86

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	67 - 159	9.3e-35	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	43
AclI	AACGTT	1 cut(s)	502
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	2 cut(s)	135, 424
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	190, 280, 301, 565
AhlI	ACTAGT	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	3 cut(s)	88, 269, 319
AluI	AGCT	3 cut(s)	88, 269, 319
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	2 cut(s)	3, 412
ApeKI	GCWGC	3 cut(s)	269, 488, 491
AspS9I	GGNCC	2 cut(s)	359, 434
AsuHPI	GGTGA	2 cut(s)	89, 531
AvaII	GGWCC	2 cut(s)	359, 434
BaeGI	GKGCMC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	256, 475, 478
BccI	CCATC	1 cut(s)	508
BciVI	GTATCC	1 cut(s)	327
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	3 cut(s)	270, 489, 492
BlsI	GCNGC	3 cut(s)	271, 490, 493
Bme18I	GGWCC	2 cut(s)	359, 434
BmgT120I	GGNCC	2 cut(s)	359, 434
BmiI	GGNNCC	1 cut(s)	361
BmsI	GCATC	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	27, 134
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 424
Bse1I	ACTGG	3 cut(s)	6, 457, 475
Bse3DI	GCAATG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	27, 134
BseLI	CCNNNNNNNGG	2 cut(s)	135, 424
BseMI	GCAATG	1 cut(s)	38
BseNI	ACTGG	3 cut(s)	6, 457, 475
BseRI	GAGGAG	2 cut(s)	255, 369
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	3 cut(s)	256, 475, 478
BshFI	GGCC	2 cut(s)	5, 414
BslFI	GGGAC	3 cut(s)	61, 345, 390
BslI	CCNNNNNNNGG	2 cut(s)	135, 424
BsmFI	GGGAC	3 cut(s)	61, 345, 390
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	5, 414
Bsp1286I	GDGCHC	2 cut(s)	229, 397
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	5, 414
BspLI	GGNNCC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	6, 457, 475
BssECI	CCNNGG	2 cut(s)	27, 134
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	195, 464, 468
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	3 cut(s)	256, 475, 478
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	5, 414
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	258, 482, 483
Cac8I	GCNNGC	3 cut(s)	195, 464, 468
Cfr13I	GGNCC	2 cut(s)	359, 434
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	1 cut(s)	495
CviJI	RGCY	7 cut(s)	5, 88, 227, 269, 296, 319, 414
CviKI_1	RGCY	7 cut(s)	5, 88, 227, 269, 296, 319, 414
CviQI	GTAC	1 cut(s)	582
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	359, 434
Eco57I	CTGAAG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	1 cut(s)	498
FaiI	YATR	7 cut(s)	70, 345, 432, 496, 507, 509, 575
FaqI	GGGAC	3 cut(s)	61, 345, 390
FatI	CATG	1 cut(s)	494
Fnu4HI	GCNGC	3 cut(s)	270, 489, 492
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	3 cut(s)	270, 489, 492
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	3 cut(s)	270, 489, 492
HaeIII	GGCC	2 cut(s)	5, 414
Hin1II	CATG	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	1 cut(s)	378
HphI	GGTGA	2 cut(s)	89, 531
Hpy188I	TCNGA	2 cut(s)	28, 205
Hpy188III	TCNNGA	2 cut(s)	209, 437
HpyAV	CCTTC	4 cut(s)	139, 295, 301, 367
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	6 cut(s)	197, 272, 401, 462, 480, 494
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	1 cut(s)	498
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	85, 117
LpnPI	CCDG	9 cut(s)	19, 113, 222, 383, 438, 450, 452, 488, 555
Lsp1109I	GCAGC	3 cut(s)	256, 475, 478
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	502
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	3 cut(s)	517, 523, 540
MhlI	GDGCHC	2 cut(s)	229, 397
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	32, 48, 152, 234, 246, 408, 586
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	372
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	62, 143, 321, 598
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	22
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	1 cut(s)	361
PctI	GAATGC	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	271, 490, 493
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PpuMI	RGGWCCY	1 cut(s)	359
Psp1406I	AACGTT	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	2 cut(s)	359, 434
PspPPI	RGGWCCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	4 cut(s)	62, 143, 321, 598
SatI	GCNGC	3 cut(s)	270, 489, 492
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	359, 434
SchI	GAGTC	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	229, 397
SfaNI	GCATC	1 cut(s)	489
SinI	GGWCC	2 cut(s)	359, 434
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	7 cut(s)	32, 48, 152, 234, 246, 408, 586
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	505
TasI	AATT	7 cut(s)	32, 48, 152, 234, 246, 408, 586
Tru1I	TTAA	4 cut(s)	62, 143, 321, 598
Tru9I	TTAA	4 cut(s)	62, 143, 321, 598
TscAI	CASTG	3 cut(s)	265, 482, 490
TseI	GCWGC	3 cut(s)	269, 488, 491
TspDTI	ATGAA	1 cut(s)	524
TspRI	CASTG	3 cut(s)	265, 482, 490
Vha464I	CTTAAG	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	359, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.