Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Forward (+)

12004451 .. 12017365

Gene Structure 12915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGATGCAATAGGAAATGGAGGATCGTTATCCCCCTTGACCATATTTGTCCCAACGGGAGCTTCCCTTTCACCAGATGTATCTGCTCCACTTGTTGCAACCCTTCCCTTGGAGTGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCCTTGTAATTGGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGTCTATGGTCCTGAAGCAACAATGGCTGGTATTTGCAAGCAGGCAATCCAGTGCGTCACTACTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

100

Amino Acids

10.11

Weight (kDa)

4.76

Isoelectric Point (pI)

24.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	37 - 76	1.3e-12	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	31, 122
AcuI	CTGAAG	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	202, 223
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	2 cut(s)	62, 191
AluI	AGCT	2 cut(s)	62, 191
AlwI	GGATC	2 cut(s)	31, 122
ApeKI	GCWGC	2 cut(s)	191, 296
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	178, 283
BisI	GCNGC	2 cut(s)	192, 297
BlsI	GCNGC	2 cut(s)	193, 298
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	280
Bse8I	GATNNNNATC	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	178, 283
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	23, 127
BspPI	GGATC	2 cut(s)	31, 122
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	23, 127
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	269, 273
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	26, 130
BstMBI	GATC	2 cut(s)	23, 127
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	178, 283
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	180, 287
Cac8I	GCNNGC	2 cut(s)	269, 273
Cfr13I	GGNCC	1 cut(s)	239
CseI	GACGC	1 cut(s)	274
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	5 cut(s)	62, 149, 191, 218, 257
CviKI_1	RGCY	5 cut(s)	62, 149, 191, 218, 257
DpnI	GATC	2 cut(s)	25, 129
DpnII	GATC	2 cut(s)	23, 127
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	303
FaiI	YATR	3 cut(s)	44, 237, 301
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	299
Fnu4HI	GCNGC	2 cut(s)	192, 297
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	192, 297
GluI	GCNGC	2 cut(s)	192, 297
HgaI	GACGC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	131, 242
HpyAV	CCTTC	3 cut(s)	113, 217, 223
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	6 cut(s)	8, 98, 119, 194, 267, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	23, 127
LmnI	GCTCC	2 cut(s)	59, 91
LpnPI	CCDG	6 cut(s)	87, 144, 243, 255, 257, 293
Lsp1109I	GCAGC	2 cut(s)	178, 283
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	25, 129
MboI	GATC	2 cut(s)	23, 127
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	2 cut(s)	156, 168
MnlI	CCTC	3 cut(s)	14, 155, 158
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	23, 127
NlaIII	CATG	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	193, 298
PspPI	GGNCC	1 cut(s)	239
SatI	GCNGC	2 cut(s)	192, 297
Sau3AI	GATC	2 cut(s)	23, 127
Sau96I	GGNCC	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	3 cut(s)	64, 193, 234
SinI	GGWCC	1 cut(s)	239
Sse9I	AATT	2 cut(s)	156, 168
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	2 cut(s)	156, 168
TscAI	CASTG	2 cut(s)	187, 287
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	191, 296
Tsp45I	GTSAC	1 cut(s)	286
TspRI	CASTG	2 cut(s)	187, 287
VpaK11BI	GGWCC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.