Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8191116.1

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 642

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8191116.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

tgtgcaacttctgatcctgatggccgtaagagagcccttgtaattggagggggaattgctaacttcactgatgtagctgcaacattcaatggcattattagagccttgaaggagaaggaatcaaagcttaaagctgctaggatgcatctttatgtcaggagaggaggtcccaactaccagaggggacttgcaaaaatgagggcacttgcagaggaaattggcctccctattgaggtctatggtcctgaagcaacaatgactggtatttgcaagcaggcaattcagtgcatcagtgctgctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

101

Amino Acids

10.76

Weight (kDa)

9.55

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	88, 109
AluBI	AGCT	3 cut(s)	77, 127, 134
AluI	AGCT	3 cut(s)	77, 127, 134
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	22, 220
ApeKI	GCWGC	4 cut(s)	77, 134, 296, 299
AspS9I	GGNCC	2 cut(s)	167, 242
AvaII	GGWCC	2 cut(s)	167, 242
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	37
BbvI	GCAGC	4 cut(s)	64, 121, 283, 286
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	4 cut(s)	78, 135, 297, 300
BlsI	GCNGC	4 cut(s)	79, 136, 298, 301
Bme18I	GGWCC	2 cut(s)	167, 242
BmgT120I	GGNCC	2 cut(s)	167, 242
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	3 cut(s)	132, 154, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	4 cut(s)	64, 121, 283, 286
BshFI	GGCC	2 cut(s)	24, 222
BslFI	GGGAC	2 cut(s)	153, 198
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmFI	GGGAC	2 cut(s)	153, 198
BsnI	GGCC	2 cut(s)	24, 222
Bsp1286I	GDGCHC	2 cut(s)	37, 205
Bsp143I	GATC	1 cut(s)	13
BspANI	GGCC	2 cut(s)	24, 222
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	272, 276
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	4 cut(s)	64, 121, 283, 286
BsuRI	GGCC	2 cut(s)	24, 222
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	3 cut(s)	66, 290, 298
Cac8I	GCNNGC	2 cut(s)	272, 276
Cfr13I	GGNCC	2 cut(s)	167, 242
CviAII	CATG	1 cut(s)	303
CviJI	RGCY	7 cut(s)	24, 35, 77, 104, 127, 134, 222
CviKI_1	RGCY	7 cut(s)	24, 35, 77, 104, 127, 134, 222
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	167, 242
Eco57I	CTGAAG	1 cut(s)	267
EcoO109I	RGGNCCY	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	1 cut(s)	306
FaiI	YATR	3 cut(s)	153, 240, 304
FaqI	GGGAC	2 cut(s)	153, 198
FatI	CATG	1 cut(s)	302
Fnu4HI	GCNGC	4 cut(s)	78, 135, 297, 300
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	4 cut(s)	78, 135, 297, 300
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	4 cut(s)	78, 135, 297, 300
HaeIII	GGCC	2 cut(s)	24, 222
Hin1II	CATG	1 cut(s)	306
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	3 cut(s)	17, 157, 245
HpyAV	CCTTC	2 cut(s)	103, 109
HpyCH4V	TGCA	8 cut(s)	5, 80, 145, 191, 209, 270, 288, 302
Hsp92II	CATG	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	30, 142, 191, 246, 258, 260
Lsp1109I	GCAGC	4 cut(s)	64, 121, 283, 286
LweI	GCATC	3 cut(s)	132, 154, 297
MaeI	CTAG	1 cut(s)	138
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MhlI	GDGCHC	2 cut(s)	37, 205
MluCI	AATT	4 cut(s)	42, 54, 216, 279
MnlI	CCTC	8 cut(s)	41, 155, 158, 174, 192, 205, 226, 233
Mph1103I	ATGCAT	1 cut(s)	147
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	150
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	306
NlaIV	GGNNCC	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	79, 136, 298, 301
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	167, 242
PspPPI	RGGWCCY	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	4 cut(s)	78, 135, 297, 300
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	2 cut(s)	167, 242
SduI	GDGCHC	2 cut(s)	37, 205
SetI	ASST	5 cut(s)	79, 129, 136, 169, 237
SfaNI	GCATC	3 cut(s)	132, 154, 297
SinI	GGWCC	2 cut(s)	167, 242
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	4 cut(s)	42, 54, 216, 279
SspMI	CTAG	1 cut(s)	138
TasI	AATT	4 cut(s)	42, 54, 216, 279
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	3 cut(s)	73, 290, 298
TseI	GCWGC	4 cut(s)	77, 134, 296, 299
TspRI	CASTG	3 cut(s)	73, 290, 298
VpaK11BI	GGWCC	2 cut(s)	167, 242
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.