Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

83234288 .. 83234771

Gene Structure 484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG540500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGTTGCCTTATGGTTTTGGATTAAGAGCAAAATTGAGGAGTTTATCAAGTCTGTATTTGTTCTATTTCAAGTGTGCAACTTCTGATCTTGATGACTGTAAGAGAGCCCTTGTAATTGGAGGAGGAATTGCTGACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGTGATCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

66

Amino Acids

7.22

Weight (kDa)

9.1

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	24 - 63	3e-11	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	70, 160, 181
AluBI	AGCT	2 cut(s)	149, 198
AluI	AGCT	2 cut(s)	149, 198
ApeKI	GCWGC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	192
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BseRI	GAGGAG	2 cut(s)	52, 135
BseXI	GCAGC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	85, 192
BssMI	GATC	2 cut(s)	85, 192
Bst4CI	ACNGT	1 cut(s)	98
BstKTI	GATC	2 cut(s)	88, 195
BstMBI	GATC	2 cut(s)	85, 192
BstV1I	GCAGC	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	138
CviJI	RGCY	4 cut(s)	107, 149, 176, 198
CviKI_1	RGCY	4 cut(s)	107, 149, 176, 198
DpnI	GATC	2 cut(s)	87, 194
DpnII	GATC	2 cut(s)	85, 192
Eco24I	GRGCYC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	109
FaiI	YATR	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	175, 181
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	77, 152
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	85, 192
Lsp1109I	GCAGC	1 cut(s)	136
MalI	GATC	2 cut(s)	87, 194
MboI	GATC	2 cut(s)	85, 192
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	3 cut(s)	32, 114, 126
MnlI	CCTC	3 cut(s)	30, 113, 116
MseI	TTAA	1 cut(s)	23
NdeII	GATC	2 cut(s)	85, 192
PkrI	GCNGC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	85, 192
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	3 cut(s)	151, 192, 200
SgeI	CNNG	5 cut(s)	60, 82, 101, 122, 190
Sse9I	AATT	3 cut(s)	32, 114, 126
TaaI	ACNGT	1 cut(s)	98
TasI	AATT	3 cut(s)	32, 114, 126
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	149
TspRI	CASTG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.