Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

10660378 .. 10662441

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1138900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTCTGTGTCAGAGATAAAATTGGGGATTTCATAAAGGGCGTAATTTCTGTATTCCAGGATTTGGATTTTAGTTTCCTGGAAATGAACCCATTTACCTTGGTTGACGGTGAACCTTATCCATTAGATATGAGGGGGGAGCTGGATGACACTGCTGCCTTCAAGAACTTCAATAAATGGGGCAGTGTGGAGTTTCCACTGCCTTTCGGCAGAGTCTTAAGTCCTACAGAAACGTTTATTCATTCTCTGGATGAAAAGACAAGCGCATCCTTAAAATTCACTGTGTTGAACCCAAAAGGACGCATCTGGACCATGGTAGCTGGAGGGGGTGCAAGTGTTATTTATGCTGATACTGTTGGAGATTTGGGTTATGCTTCAGAACTTGGAAATTATGCAGAGTATAGTGGAGCTCCAAATGAGGAAGAGGTGTTGCAATATGCAAGAGTTGTGGTCGATTGTGCAACAGCTGATCCAGATGGTCGTAAAAGAGCTCTAATAATTGGAGGTGGTATAGCCAATTTCACAGACGTAGCTGCTACATTCAGTGGAATTATTAGAGCCCTAAGGGAGAAGGAATCCAAGCTAAAAGCGGCAAGAATGCATATATTTGTGAGAAGGGGCGGTCCAAATTATCAAACTGGTTTGGCAAAGATGCGTGCTTTGGGGGAAGAACTCGGAGTTCCTCTTGAGGTTTATGGCCCTGAGGCAACAATGACCGGAATTTGCAAGCAAGCAATTGAGTGCATCGTGGATGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

254

Amino Acids

27.55

Weight (kDa)

4.89

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synth_N	PF24948	5 - 60	5e-14	ATP-citrate synthase ATP-grasp domain
Citrate_bind	PF16114	71 - 247	3.7e-85	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	64
AciI	CCGC	2 cut(s)	590, 621
AclI	AACGTT	1 cut(s)	233
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	275, 720
AcuI	CTGAAG	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflII	CTTAAG	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	163, 172, 289
AjnI	CCWGG	2 cut(s)	57, 78
AluBI	AGCT	8 cut(s)	142, 320, 410, 467, 491, 533, 583, 758
AluI	AGCT	8 cut(s)	142, 320, 410, 467, 491, 533, 583, 758
Alw21I	GWGCWC	2 cut(s)	412, 493
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	697
ApeKI	GCWGC	2 cut(s)	155, 533
ApoI	RAATTY	2 cut(s)	275, 720
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	309, 623, 698
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	309, 623
AxyI	CCTNAGG	2 cut(s)	563, 702
BanII	GRGCYC	3 cut(s)	412, 493, 562
Bbv12I	GWGCWC	2 cut(s)	412, 493
BbvI	GCAGC	2 cut(s)	142, 520
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	2 cut(s)	59, 80
BfmI	CTRYAG	1 cut(s)	225
BfrI	CTTAAG	1 cut(s)	217
BisI	GCNGC	3 cut(s)	156, 534, 591
BlsI	GCNGC	3 cut(s)	157, 535, 592
Bme1390I	CCNGG	2 cut(s)	59, 80
Bme18I	GGWCC	2 cut(s)	309, 623
BmgT120I	GGNCC	3 cut(s)	309, 623, 698
BmrFI	CCNGG	2 cut(s)	59, 80
BmsI	GCATC	4 cut(s)	275, 312, 642, 753
BpmI	CTGGAG	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	707
BsaJI	CCNNGG	2 cut(s)	99, 312
BsaWI	WCCGGW	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	643
Bse21I	CCTNAGG	2 cut(s)	563, 702
BseBI	CCWGG	2 cut(s)	59, 80
BseDI	CCNNGG	2 cut(s)	99, 312
BseGI	GGATG	4 cut(s)	151, 256, 266, 757
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	1 cut(s)	643
BseXI	GCAGC	2 cut(s)	142, 520
BshFI	GGCC	1 cut(s)	699
BsiHKAI	GWGCWC	2 cut(s)	412, 493
BsiSI	CCGG	1 cut(s)	717
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	1 cut(s)	699
Bsp1286I	GDGCHC	3 cut(s)	412, 493, 562
Bsp143I	GATC	1 cut(s)	469
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	2 cut(s)	590, 621
BspANI	GGCC	1 cut(s)	699
BspCNI	CTCAG	1 cut(s)	694
BspPI	GGATC	1 cut(s)	464
BspTI	CTTAAG	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	643
BssECI	CCNNGG	2 cut(s)	99, 312
BssMI	GATC	1 cut(s)	469
BssT1I	CCWWGG	2 cut(s)	99, 312
Bst2UI	CCWGG	2 cut(s)	59, 80
Bst4CI	ACNGT	3 cut(s)	110, 283, 355
Bst6I	CTCTTC	1 cut(s)	417
BstAFI	CTTAAG	1 cut(s)	217
BstC8I	GCNNGC	3 cut(s)	657, 728, 732
BstDEI	CTNAG	2 cut(s)	563, 702
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	4 cut(s)	151, 256, 266, 757
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	472
BstMBI	GATC	1 cut(s)	469
BstNI	CCWGG	2 cut(s)	59, 80
BstSCI	CCNGG	2 cut(s)	57, 78
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	142, 520
Bsu36I	CCTNAGG	2 cut(s)	563, 702
BsuRI	GGCC	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	4 cut(s)	151, 256, 266, 757
BtsI	GCAGTG	3 cut(s)	150, 190, 197
BtsIMutI	CAGTG	5 cut(s)	150, 190, 197, 279, 550
Cac8I	GCNNGC	3 cut(s)	657, 728, 732
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	309, 623, 698
CseI	GACGC	1 cut(s)	309
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	563, 702
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	2 cut(s)	410, 491
Eco130I	CCWWGG	2 cut(s)	99, 312
Eco24I	GRGCYC	3 cut(s)	412, 493, 562
Eco47I	GGWCC	2 cut(s)	309, 623
Eco53kI	GAGCTC	2 cut(s)	410, 491
Eco57I	CTGAAG	1 cut(s)	360
Eco81I	CCTNAGG	2 cut(s)	563, 702
EcoICRI	GAGCTC	2 cut(s)	410, 491
EcoRII	CCWGG	2 cut(s)	57, 78
EcoT14I	CCWWGG	2 cut(s)	99, 312
EcoT22I	ATGCAT	1 cut(s)	603
EcoT38I	GRGCYC	3 cut(s)	412, 493, 562
ErhI	CCWWGG	2 cut(s)	99, 312
FaeI	CATG	1 cut(s)	316
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	156, 534, 591
FokI	GGATG	3 cut(s)	158, 253, 263
FriOI	GRGCYC	3 cut(s)	412, 493, 562
Fsp4HI	GCNGC	3 cut(s)	156, 534, 591
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	3 cut(s)	156, 534, 591
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	699
HapII	CCGG	1 cut(s)	717
HgaI	GACGC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	2 cut(s)	213, 575
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	106, 113
Hpy188I	TCNGA	3 cut(s)	14, 379, 677
Hpy188III	TCNNGA	5 cut(s)	163, 248, 307, 473, 686
Hpy8I	GTNNAC	2 cut(s)	106, 113
HpyAV	CCTTC	3 cut(s)	169, 565, 609
HpyCH4III	ACNGT	3 cut(s)	110, 283, 355
HpyCH4IV	ACGT	2 cut(s)	233, 528
HpyCH4V	TGCA	8 cut(s)	332, 395, 433, 440, 461, 601, 726, 744
HpyF3I	CTNAG	2 cut(s)	563, 702
HpySE526I	ACGT	2 cut(s)	233, 528
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	3 cut(s)	139, 407, 415
Lsp1109I	GCAGC	2 cut(s)	142, 520
LweI	GCATC	4 cut(s)	275, 312, 642, 753
MaeII	ACGT	2 cut(s)	233, 528
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	2 cut(s)	434, 680
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	3 cut(s)	412, 493, 562
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	8 cut(s)	126, 317, 412, 418, 497, 682, 693, 697
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	3 cut(s)	218, 272, 760
MspA1I	CMGCKG	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	217
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	2 cut(s)	59, 80
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	603
MvaI	CCWGG	2 cut(s)	59, 80
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	603
PctI	GAATGC	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	575
PflMI	CCANNNNNTGG	1 cut(s)	64
PfoI	TCCNGGA	2 cut(s)	57, 78
PkrI	GCNGC	3 cut(s)	157, 535, 592
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Psp124BI	GAGCTC	2 cut(s)	412, 493
Psp1406I	AACGTT	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	57, 78
PspGI	CCWGG	2 cut(s)	57, 78
PspPI	GGNCC	3 cut(s)	309, 623, 698
PvuII	CAGCTG	1 cut(s)	467
SacI	GAGCTC	2 cut(s)	412, 493
SaqAI	TTAA	3 cut(s)	218, 272, 760
SatI	GCNGC	3 cut(s)	156, 534, 591
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	3 cut(s)	309, 623, 698
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	2 cut(s)	59, 80
SduI	GDGCHC	3 cut(s)	412, 493, 562
SfaNI	GCATC	4 cut(s)	275, 312, 642, 753
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	309, 623
SmlI	CTYRAG	2 cut(s)	217, 686
SmoI	CTYRAG	2 cut(s)	217, 686
SsiI	CCGC	2 cut(s)	590, 621
SstI	GAGCTC	2 cut(s)	412, 493
StyD4I	CCNGG	2 cut(s)	57, 78
StyI	CCWWGG	2 cut(s)	99, 312
TaaI	ACNGT	3 cut(s)	110, 283, 355
TaiI	ACGT	2 cut(s)	236, 531
TaqI	TCGA	1 cut(s)	453
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	3 cut(s)	218, 272, 760
Tru9I	TTAA	3 cut(s)	218, 272, 760
TscAI	CASTG	5 cut(s)	157, 190, 204, 286, 550
TseI	GCWGC	2 cut(s)	155, 533
TspDTI	ATGAA	4 cut(s)	22, 101, 230, 267
TspRI	CASTG	5 cut(s)	157, 190, 204, 286, 550
Van91I	CCANNNNNTGG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	309, 623
XapI	RAATTY	2 cut(s)	275, 720
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.