Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

34311683 .. 34321486

Gene Structure 9804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG318000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCGGAAGGATAGTAAAGCAGAAGGAAACAGTTGTTCAAAAATTTCTTTAGGATGTGCAACTTCTAATCCTGATGACCGTAAGAGAGCCCTTGTAATTGGAGGAGGAATTTCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTAAAGGCTGATAGGATGCATCTTTATGTCAGGAGAGGAGGTCCCAACTACCAGATGGGACTCACAAAAATGAGGGCACTTGCAGAGGAAATTGGCCTCCCTATTGAGGTCTATGGTCCTGAAGCAACAATGACTGAACCCAAAACAGTGGACAGAGTAATCAAGCAAAATGATCATTTTGCAGATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

123

Amino Acids

13.56

Weight (kDa)

9.17

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	12 - 106	3.8e-34	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	2 cut(s)	42, 108
AcuI	CTGAAG	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	3 cut(s)	39, 142, 163
AluBI	AGCT	2 cut(s)	131, 181
AluI	AGCT	2 cut(s)	131, 181
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	42, 108
AspS9I	GGNCC	2 cut(s)	221, 296
AvaII	GGWCC	2 cut(s)	221, 296
BaeGI	GKGCMC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	229
BclI	TGATCA	1 cut(s)	352
BfaI	CTAG	1 cut(s)	370
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	2 cut(s)	221, 296
BmgT120I	GGNCC	2 cut(s)	221, 296
BmiI	GGNNCC	1 cut(s)	223
BmsI	GCATC	2 cut(s)	186, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
BseGI	GGATG	2 cut(s)	59, 201
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseRI	GAGGAG	2 cut(s)	117, 231
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	276
BslFI	GGGAC	2 cut(s)	207, 252
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	207, 252
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	91, 259
Bsp143I	GATC	2 cut(s)	352, 364
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	223
BssMI	GATC	2 cut(s)	352, 364
Bst4CI	ACNGT	3 cut(s)	32, 80, 328
BstF5I	GGATG	2 cut(s)	59, 201
BstKTI	GATC	2 cut(s)	355, 367
BstMBI	GATC	2 cut(s)	352, 364
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	59, 201
BtsIMutI	CAGTG	2 cut(s)	120, 333
Cfr13I	GGNCC	2 cut(s)	221, 296
CviJI	RGCY	6 cut(s)	89, 131, 158, 181, 188, 276
CviKI_1	RGCY	6 cut(s)	89, 131, 158, 181, 188, 276
DpnI	GATC	2 cut(s)	354, 366
DpnII	GATC	2 cut(s)	352, 364
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	221, 296
Eco57I	CTGAAG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	91
FaiI	YATR	2 cut(s)	207, 294
FaqI	GGGAC	2 cut(s)	207, 252
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	66, 208
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	370
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	276
HinfI	GANTC	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188III	TCNNGA	3 cut(s)	71, 211, 299
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	3 cut(s)	17, 157, 163
HpyCH4III	ACNGT	3 cut(s)	32, 80, 328
HpyCH4V	TGCA	5 cut(s)	59, 134, 199, 263, 362
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	352, 364
LpnPI	CCDG	4 cut(s)	84, 196, 245, 312
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	2 cut(s)	186, 208
MaeI	CTAG	1 cut(s)	370
MalI	GATC	2 cut(s)	354, 366
MboI	GATC	2 cut(s)	352, 364
MhlI	GDGCHC	2 cut(s)	91, 259
MluCI	AATT	4 cut(s)	42, 96, 108, 270
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	95, 98, 209, 212, 246, 259, 280, 287
Mph1103I	ATGCAT	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	204, 248
NdeII	GATC	2 cut(s)	352, 364
NlaIV	GGNNCC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	221, 296
PspPPI	RGGWCCY	1 cut(s)	221
RseI	CAYNNNNRTG	2 cut(s)	204, 248
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	352, 364
Sau96I	GGNCC	2 cut(s)	221, 296
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	91, 259
SetI	ASST	4 cut(s)	133, 183, 223, 291
SfaNI	GCATC	2 cut(s)	186, 208
SgeI	CNNG	8 cut(s)	83, 104, 172, 223, 244, 272, 311, 355
SinI	GGWCC	2 cut(s)	221, 296
SmiMI	CAYNNNNRTG	2 cut(s)	204, 248
Sse9I	AATT	4 cut(s)	42, 96, 108, 270
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	370
TaaI	ACNGT	3 cut(s)	32, 80, 328
TasI	AATT	4 cut(s)	42, 96, 108, 270
TscAI	CASTG	2 cut(s)	127, 333
TseI	GCWGC	1 cut(s)	131
TspRI	CASTG	2 cut(s)	127, 333
VpaK11BI	GGWCC	2 cut(s)	221, 296
XapI	RAATTY	2 cut(s)	42, 108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	1 cut(s)	370
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.