Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

34199157 .. 34203319

Gene Structure 4163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTTACAAAGAAGGGTTTTTTGAAACTTGTGCACCTCCAAGTGACTGACATCTCACTCTGGACAAGATCAGAGAGTTCTGTTGCAGGACTTCAAGTTCCTCAATCTGCTGTGACATCGTATTTCAAAGAGCAATCTTCTGGTAAGTGGGAACTCCAATTACCAGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTAGAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAGACAGTGGCACAAGCTTTTTGTGAGGCAGTTAAGACCATATTTGTCCCAACGGGAGCTTCTCTTTCACCAGATGTATCTGCTCCACTTGTTGCAACTCTTCCCTTGGAGTGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCCTTGTAATGGGAGGAGGAATTGCTAACTTCACTGATGCAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTAAAGGCTGATAGGATGCATCTTTATGTTAGGAGAGGAGGTCCCAACTACCAGAGGGGACTTGCAAAAATGAGGGCACTTGCAGAGGAAATTGGCCTCCCTATTGAGGTCTATGGTCCTGAAGCAACAGTGGCTGGTATTTGCAAGCAGGCAATCCAGTGCATCACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

216

Amino Acids

23.47

Weight (kDa)

9.32

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	116 - 212	4.2e-35	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	394, 583
AgsI	TTSAA	5 cut(s)	25, 95, 127, 439, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	4 cut(s)	257, 299, 428, 478
AluI	AGCT	4 cut(s)	257, 299, 428, 478
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	359
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	197, 571
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	425, 428
AspS9I	GGNCC	2 cut(s)	518, 593
AsuHPI	GGTGA	1 cut(s)	300
AvaII	GGWCC	2 cut(s)	518, 593
BaeGI	GKGCMC	2 cut(s)	36, 556
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	415, 437
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	426, 429
BlsI	GCNGC	2 cut(s)	427, 430
Bme18I	GGWCC	2 cut(s)	518, 593
BmgT120I	GGNCC	2 cut(s)	518, 593
BmiI	GGNNCC	1 cut(s)	520
BmsI	GCATC	3 cut(s)	412, 483, 505
BpiI	GAAGAC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 583
Bse1I	ACTGG	2 cut(s)	223, 634
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	394, 583
BseNI	ACTGG	2 cut(s)	223, 634
BseRI	GAGGAG	2 cut(s)	414, 528
BseSI	GKGCMC	2 cut(s)	36, 556
BseXI	GCAGC	2 cut(s)	415, 437
BshFI	GGCC	2 cut(s)	199, 573
BsiHKAI	GWGCWC	1 cut(s)	36
BslFI	GGGAC	3 cut(s)	272, 504, 549
BslI	CCNNNNNNNGG	2 cut(s)	394, 583
BsmFI	GGGAC	3 cut(s)	272, 504, 549
BsnI	GGCC	2 cut(s)	199, 573
Bsp1286I	GDGCHC	3 cut(s)	36, 388, 556
Bsp143I	GATC	2 cut(s)	68, 364
BspANI	GGCC	2 cut(s)	199, 573
BspLI	GGNNCC	1 cut(s)	520
BspPI	GGATC	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	223, 634
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	2 cut(s)	68, 364
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	4 cut(s)	175, 247, 377, 607
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	623, 627
BstF5I	GGATG	1 cut(s)	498
BstKTI	GATC	2 cut(s)	71, 367
BstMBI	GATC	2 cut(s)	68, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstSLI	GKGCMC	2 cut(s)	36, 556
BstV1I	GCAGC	2 cut(s)	415, 437
BstV2I	GAAGAC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	199, 573
BtsCI	GGATG	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	7 cut(s)	171, 216, 252, 417, 612, 641, 642
Cac8I	GCNNGC	2 cut(s)	623, 627
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	518, 593
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	648
DpnI	GATC	2 cut(s)	70, 366
DpnII	GATC	2 cut(s)	68, 364
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	518, 593
Eco57I	CTGAAG	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	1 cut(s)	651
FaiI	YATR	4 cut(s)	281, 504, 591, 649
FaqI	GGGAC	3 cut(s)	272, 504, 549
FatI	CATG	1 cut(s)	647
Fnu4HI	GCNGC	2 cut(s)	426, 429
FokI	GGATG	1 cut(s)	505
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	426, 429
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	2 cut(s)	426, 429
HaeIII	GGCC	2 cut(s)	199, 573
Hin1II	CATG	1 cut(s)	651
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	73, 364
Hpy188III	TCNNGA	3 cut(s)	61, 368, 596
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	7, 454, 460
HpyCH4III	ACNGT	4 cut(s)	175, 247, 377, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
Hsp92II	CATG	1 cut(s)	651
Kzo9I	GATC	2 cut(s)	68, 364
LmnI	GCTCC	3 cut(s)	234, 296, 328
Lsp1109I	GCAGC	2 cut(s)	415, 437
LweI	GCATC	3 cut(s)	412, 483, 505
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	3 cut(s)	43, 112, 211
MalI	GATC	2 cut(s)	70, 366
MboI	GATC	2 cut(s)	68, 364
MboII	GAAGA	3 cut(s)	129, 253, 332
MhlI	GDGCHC	3 cut(s)	36, 388, 556
MluCI	AATT	3 cut(s)	158, 405, 567
Mph1103I	ATGCAT	1 cut(s)	498
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	428
MwoI	GCNNNNNNNGC	1 cut(s)	608
NdeII	GATC	2 cut(s)	68, 364
NlaIII	CATG	1 cut(s)	651
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	3 cut(s)	43, 112, 211
NsiI	ATGCAT	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	427, 430
PpuMI	RGGWCCY	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	2 cut(s)	518, 593
PspPPI	RGGWCCY	1 cut(s)	518
PsrI	GAACNNNNNNTAC	2 cut(s)	144, 176
PstNI	CAGNNNCTG	1 cut(s)	611
PsyI	GACNNNGTC	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	426, 429
Sau3AI	GATC	2 cut(s)	68, 364
Sau96I	GGNCC	2 cut(s)	518, 593
SduI	GDGCHC	3 cut(s)	36, 388, 556
SetI	ASST	7 cut(s)	39, 259, 301, 430, 480, 520, 588
SfaNI	GCATC	3 cut(s)	412, 483, 505
SinI	GGWCC	2 cut(s)	518, 593
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	158, 405, 567
SspMI	CTAG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	4 cut(s)	175, 247, 377, 607
TaqI	TCGA	1 cut(s)	229
TasI	AATT	3 cut(s)	158, 405, 567
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	7 cut(s)	178, 223, 252, 424, 612, 641, 649
TseFI	GTSAC	3 cut(s)	43, 112, 211
TseI	GCWGC	2 cut(s)	425, 428
Tsp45I	GTSAC	3 cut(s)	43, 112, 211
TspRI	CASTG	7 cut(s)	178, 223, 252, 424, 612, 641, 649
Tth111I	GACNNNGTC	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	2 cut(s)	518, 593
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.