Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005223.1

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

96790 .. 97744

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005223.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgcagcttacgaatgtggtcactacgtatctctatagggatctagatatggaatataatgaaggggaaaccaatgaacacccgaaatccgagtttgagatgaagaaccttgggagaacatggttttgtctagatttagaacttgtataccgttgtgcaacttctgatcctgatggccgtaagagagcccttgtaattggaggaggaattgctaacttcactgatgtagctgcaacattcaatggcattattagagccttgaaggagaaggtctttggtcctgaagcaacaatggctggtatttgcaagcaggcaatccagtgcatcactgctgctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

113

Amino Acids

12.54

Weight (kDa)

5.11

Isoelectric Point (pI)

5.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	48, 161
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	241, 262
AluBI	AGCT	2 cut(s)	7, 230
AluI	AGCT	2 cut(s)	7, 230
AlwI	GGATC	2 cut(s)	48, 161
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	4 cut(s)	4, 230, 332, 335
AspS9I	GGNCC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	4 cut(s)	16, 217, 319, 322
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	162
BfaI	CTAG	2 cut(s)	44, 131
BfmI	CTRYAG	1 cut(s)	34
BisI	GCNGC	4 cut(s)	5, 231, 333, 336
BlsI	GCNGC	4 cut(s)	6, 232, 334, 337
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmsI	GCATC	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	16, 217, 319, 322
BshFI	GGCC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	40, 166
BspANI	GGCC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	48, 161
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	40, 166
BssNAI	GTATAC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	308, 312
BstKTI	GATC	2 cut(s)	43, 169
BstMBI	GATC	2 cut(s)	40, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	34
BstSNI	TACGTA	1 cut(s)	27
BstV1I	GCAGC	4 cut(s)	16, 217, 319, 322
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BstZ17I	GTATAC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	3 cut(s)	219, 326, 327
Cac8I	GCNNGC	2 cut(s)	308, 312
Cfr13I	GGNCC	1 cut(s)	278
CviAII	CATG	2 cut(s)	120, 339
CviJI	RGCY	6 cut(s)	7, 177, 188, 230, 257, 296
CviKI_1	RGCY	6 cut(s)	7, 177, 188, 230, 257, 296
DpnI	GATC	2 cut(s)	42, 168
DpnII	GATC	2 cut(s)	40, 166
EaeI	YGGCCR	1 cut(s)	175
Eco105I	TACGTA	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	2 cut(s)	123, 342
FaiI	YATR	6 cut(s)	36, 50, 57, 121, 148, 340
FatI	CATG	2 cut(s)	119, 338
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	5, 231, 333, 336
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	4 cut(s)	5, 231, 333, 336
FspBI	CTAG	2 cut(s)	44, 131
GluI	GCNGC	4 cut(s)	5, 231, 333, 336
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	123, 342
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	91, 166
Hpy188III	TCNNGA	4 cut(s)	44, 131, 170, 281
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	56, 256, 262
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	6 cut(s)	4, 158, 233, 306, 324, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	123, 342
Kzo9I	GATC	2 cut(s)	40, 166
LpnPI	CCDG	5 cut(s)	183, 282, 294, 296, 332
Lsp1109I	GCAGC	4 cut(s)	16, 217, 319, 322
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	44, 131
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	42, 168
MboI	GATC	2 cut(s)	40, 166
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	195, 207
MnlI	CCTC	2 cut(s)	194, 197
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	2 cut(s)	40, 166
NlaIII	CATG	2 cut(s)	123, 342
NmuCI	GTSAC	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	6, 232, 334, 337
Ppu21I	YACGTR	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	40
SatI	GCNGC	4 cut(s)	5, 231, 333, 336
Sau3AI	GATC	2 cut(s)	40, 166
Sau96I	GGNCC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	5 cut(s)	9, 29, 111, 232, 273
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	1 cut(s)	278
SnaBI	TACGTA	1 cut(s)	27
Sse9I	AATT	2 cut(s)	195, 207
SspMI	CTAG	2 cut(s)	44, 131
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	29
TasI	AATT	2 cut(s)	195, 207
TscAI	CASTG	3 cut(s)	226, 326, 334
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	4 cut(s)	4, 230, 332, 335
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	75, 90, 116
TspRI	CASTG	3 cut(s)	226, 326, 334
VpaK11BI	GGWCC	1 cut(s)	278
XbaI	TCTAGA	2 cut(s)	43, 130
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	44, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.