Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

11436093 .. 11438026

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1146700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCTTAATGTATTCTGCTGCTTACAGGTCAGAGACAAAATTGGAGATTTCATAAAGGGCGTATTTTCTGTATTCCAGGATTTGGATTTTAGTTTCCTGGAAATGAACCCATTTACCTTGGTTGACGGTGAACCTTGTCCATTAGATATGAGGGGGGAGCTGGATGACACTGCTGCCTTCAAGAACAATAAATGGGGCAGTGTGGAGTTTCCACTGCCTTTCGGCAGAGTCTTAAGTCCTACAGAAACGTTTATTCATTCTCTGGATGAAAAGAGTATAGTGGAGCTCCAACTGTTGCAATATGCAAGAGTTGTGATCAATTGTGCCACAGCTGATCCAGATGGTTGTAAAAGAGCTCTAATAATTGGAGGTGGTATAGCTAATTTCACAGACGTAGCTGCTACATTCAATGGAATTATTAGAGCCCTAAGGGAGAAGGAATCCAAGCTAAAAGCGGCAAGAATGCATATATTTGTGAGAAAAGGCGGTCCAAATTATCAAACTGGTTTGGCAAAGATGAGTGCTTTGGGGGAAGAACTCGGAGTTCCTCTTGAGGTTTATGGCCCTGAGGCAACAATGACCGAAATTTGCAAGCAAGCAATTGAGTGCATCGTGGATGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

209

Amino Acids

22.92

Weight (kDa)

4.87

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synth_N	PF24948	10 - 64	1.5e-13	ATP-citrate synthase ATP-grasp domain
Citrate_bind	PF16114	96 - 202	5.8e-41	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	82
AciI	CCGC	2 cut(s)	455, 486
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	585
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflII	CTTAAG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	181, 409
AjnI	CCWGG	2 cut(s)	75, 96
AluBI	AGCT	8 cut(s)	160, 286, 332, 356, 380, 398, 448, 623
AluI	AGCT	8 cut(s)	160, 286, 332, 356, 380, 398, 448, 623
Alw21I	GWGCWC	2 cut(s)	288, 358
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	3 cut(s)	18, 173, 398
ApoI	RAATTY	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	488, 563
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	488
AxyI	CCTNAGG	2 cut(s)	428, 567
BanII	GRGCYC	3 cut(s)	288, 358, 427
Bbv12I	GWGCWC	2 cut(s)	288, 358
BbvI	GCAGC	3 cut(s)	5, 160, 385
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	2 cut(s)	77, 98
BclI	TGATCA	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	232
BisI	GCNGC	4 cut(s)	19, 174, 399, 456
BlsI	GCNGC	4 cut(s)	20, 175, 400, 457
Bme1390I	CCNGG	2 cut(s)	77, 98
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	488, 563
BmrFI	CCNGG	2 cut(s)	77, 98
BmsI	GCATC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	508
Bse21I	CCTNAGG	2 cut(s)	428, 567
BseBI	CCWGG	2 cut(s)	77, 98
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	3 cut(s)	169, 271, 622
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	508
BseXI	GCAGC	3 cut(s)	5, 160, 385
BshFI	GGCC	1 cut(s)	564
BsiHKAI	GWGCWC	2 cut(s)	288, 358
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	564
Bsp1286I	GDGCHC	3 cut(s)	288, 358, 427
Bsp143I	GATC	2 cut(s)	315, 334
BspACI	CCGC	2 cut(s)	455, 486
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	1 cut(s)	559
BspPI	GGATC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	315, 334
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	77, 98
Bst4CI	ACNGT	2 cut(s)	128, 294
BstAFI	CTTAAG	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	593, 597
BstDEI	CTNAG	2 cut(s)	428, 567
BstF5I	GGATG	3 cut(s)	169, 271, 622
BstKTI	GATC	2 cut(s)	318, 337
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	315, 334
BstNI	CCWGG	2 cut(s)	77, 98
BstSCI	CCNGG	2 cut(s)	75, 96
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	5, 160, 385
Bsu36I	CCTNAGG	2 cut(s)	428, 567
BsuRI	GGCC	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	169, 271, 622
BtsI	GCAGTG	3 cut(s)	168, 205, 212
BtsIMutI	CAGTG	3 cut(s)	168, 205, 212
Cac8I	GCNNGC	2 cut(s)	593, 597
Cfr13I	GGNCC	2 cut(s)	488, 563
DdeI	CTNAG	2 cut(s)	428, 567
DpnI	GATC	2 cut(s)	317, 336
DpnII	GATC	2 cut(s)	315, 334
Ecl136II	GAGCTC	2 cut(s)	286, 356
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	3 cut(s)	288, 358, 427
Eco47I	GGWCC	1 cut(s)	488
Eco53kI	GAGCTC	2 cut(s)	286, 356
Eco81I	CCTNAGG	2 cut(s)	428, 567
EcoICRI	GAGCTC	2 cut(s)	286, 356
EcoRII	CCWGG	2 cut(s)	75, 96
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	3 cut(s)	288, 358, 427
ErhI	CCWWGG	1 cut(s)	117
FaiI	YATR	8 cut(s)	53, 149, 278, 303, 377, 468, 470, 561
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	4 cut(s)	19, 174, 399, 456
FokI	GGATG	2 cut(s)	176, 278
FriOI	GRGCYC	3 cut(s)	288, 358, 427
Fsp4HI	GCNGC	4 cut(s)	19, 174, 399, 456
GluI	GCNGC	4 cut(s)	19, 174, 399, 456
HaeIII	GGCC	1 cut(s)	564
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	621
HinfI	GANTC	2 cut(s)	228, 440
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	124, 131
Hpy188I	TCNGA	2 cut(s)	32, 542
Hpy188III	TCNNGA	4 cut(s)	181, 263, 338, 551
Hpy8I	GTNNAC	2 cut(s)	124, 131
HpyAV	CCTTC	2 cut(s)	187, 430
HpyCH4III	ACNGT	2 cut(s)	128, 294
HpyCH4IV	ACGT	2 cut(s)	248, 393
HpyCH4V	TGCA	5 cut(s)	298, 305, 466, 591, 609
HpyF3I	CTNAG	2 cut(s)	428, 567
HpySE526I	ACGT	2 cut(s)	248, 393
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	315, 334
LmnI	GCTCC	3 cut(s)	157, 283, 291
Lsp1109I	GCAGC	3 cut(s)	5, 160, 385
LweI	GCATC	1 cut(s)	618
MaeII	ACGT	2 cut(s)	248, 393
MalI	GATC	2 cut(s)	317, 336
MboI	GATC	2 cut(s)	315, 334
MboII	GAAGA	1 cut(s)	545
MfeI	CAATTG	2 cut(s)	319, 600
MhlI	GDGCHC	3 cut(s)	288, 358, 427
MluCI	AATT	8 cut(s)	39, 319, 363, 382, 414, 493, 585, 600
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	5 cut(s)	144, 362, 547, 558, 562
Mph1103I	ATGCAT	1 cut(s)	468
MseI	TTAA	3 cut(s)	6, 233, 625
MspA1I	CMGCKG	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	232
MspR9I	CCNGG	2 cut(s)	77, 98
MunI	CAATTG	2 cut(s)	319, 600
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	77, 98
NdeII	GATC	2 cut(s)	315, 334
NsiI	ATGCAT	1 cut(s)	468
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	82
PfoI	TCCNGGA	2 cut(s)	75, 96
PkrI	GCNGC	4 cut(s)	20, 175, 400, 457
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	2 cut(s)	288, 358
Psp1406I	AACGTT	1 cut(s)	248
Psp6I	CCWGG	2 cut(s)	75, 96
PspGI	CCWGG	2 cut(s)	75, 96
PspPI	GGNCC	2 cut(s)	488, 563
PvuII	CAGCTG	1 cut(s)	332
SacI	GAGCTC	2 cut(s)	288, 358
SaqAI	TTAA	3 cut(s)	6, 233, 625
SatI	GCNGC	4 cut(s)	19, 174, 399, 456
Sau3AI	GATC	2 cut(s)	315, 334
Sau96I	GGNCC	2 cut(s)	488, 563
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	77, 98
SduI	GDGCHC	3 cut(s)	288, 358, 427
SfaNI	GCATC	1 cut(s)	618
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	488
SmlI	CTYRAG	2 cut(s)	232, 551
SmoI	CTYRAG	2 cut(s)	232, 551
Sse9I	AATT	8 cut(s)	39, 319, 363, 382, 414, 493, 585, 600
SsiI	CCGC	2 cut(s)	455, 486
SstI	GAGCTC	2 cut(s)	288, 358
StyD4I	CCNGG	2 cut(s)	75, 96
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	128, 294
TaiI	ACGT	2 cut(s)	251, 396
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	8 cut(s)	39, 319, 363, 382, 414, 493, 585, 600
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	3 cut(s)	6, 233, 625
Tru9I	TTAA	3 cut(s)	6, 233, 625
TscAI	CASTG	3 cut(s)	175, 205, 219
TseI	GCWGC	3 cut(s)	18, 173, 398
TspDTI	ATGAA	4 cut(s)	40, 119, 245, 282
TspRI	CASTG	3 cut(s)	175, 205, 219
Van91I	CCANNNNNTGG	1 cut(s)	82
Vha464I	CTTAAG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.