Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

46007120 .. 46009796

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG342600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTTTTGGGAATTGACATTGAGGAGAACTGGGATAAGGTTAAGACCATATTTGTCCCAACGGAAGCTTCCCTTTCACCAGATGTATCTGCTCCACTTGTTGCGACCCTTCCCTTGGAGTGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCCTTGTAATTAGAAAAGAAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGGGCCTTTATTGAGCTTATTTAGCAGTATACATCTCTCTGTTACCTCTTCATCTATCTTTGCTTGTGTTCCTTTTGCAGAGTCTAGCTCAGACCCAGCTGAATGGAGTACAGCCTCGGTGGACTCAGCGAAGTTGGAGTGGGAGACGAAACTCACAAGGAAGAGAAACTTTTTTTGTTATGTTTTTATACCTAATTTGTGGTCCTGTCAAAGCTTTTGTTTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

154

Amino Acids

17.01

Weight (kDa)

5.01

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	39 - 79	9.9e-09	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	208, 229
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	6 cut(s)	68, 197, 252, 324, 335, 450
AluI	AGCT	6 cut(s)	68, 197, 252, 324, 335, 450
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	239, 438
AsuHPI	GGTGA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	239, 438
BmiI	GGNNCC	1 cut(s)	240
BmrI	ACTGGG	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BsaJI	CCNNGG	2 cut(s)	114, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	114, 351
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	339, 375
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	331
BshFI	GGCC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	374
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	338, 374
BspHI	TCATGA	1 cut(s)	461
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	114, 351
BssMI	GATC	1 cut(s)	133
BssNAI	GTATAC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	114
Bst1107I	GTATAC	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	2 cut(s)	289, 392
BstDEI	CTNAG	2 cut(s)	325, 361
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	339
BstZ17I	GTATAC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	239, 438
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	1 cut(s)	462
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	2 cut(s)	325, 361
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	289, 392
EarI	CTCTTC	2 cut(s)	289, 392
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	1 cut(s)	465
FaiI	YATR	5 cut(s)	50, 266, 417, 425, 463
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 389, 421
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	461
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	1 cut(s)	198
GsaI	CCCAGC	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	465
HindIII	AAGCTT	2 cut(s)	66, 448
HinfI	GANTC	2 cut(s)	317, 359
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	266, 358
Hpy188I	TCNGA	2 cut(s)	133, 328
Hpy188III	TCNNGA	2 cut(s)	137, 462
Hpy8I	GTNNAC	2 cut(s)	266, 358
HpyAV	CCTTC	3 cut(s)	119, 223, 229
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	125, 200, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	325, 361
Hsp92II	CATG	1 cut(s)	465
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	5 cut(s)	16, 93, 150, 345, 454
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	276, 409
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	4 cut(s)	12, 162, 174, 430
MlyI	GAGTC	2 cut(s)	326, 353
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	3 cut(s)	16, 292, 361
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	465
NlaIV	GGNNCC	1 cut(s)	240
PagI	TCATGA	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	2 cut(s)	325, 353
PpsI	GAGTC	2 cut(s)	325, 353
PspFI	CCCAGC	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	239, 438
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	239, 438
SchI	GAGTC	2 cut(s)	326, 353
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	9 cut(s)	42, 70, 199, 254, 284, 326, 337, 430, 452
SinI	GGWCC	1 cut(s)	438
Sse9I	AATT	4 cut(s)	12, 162, 174, 430
SspMI	CTAG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	146
TasI	AATT	4 cut(s)	12, 162, 174, 430
TatI	WGTACW	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.