Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Forward (+)

16220535 .. 16222019

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022981

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTTATTTCCACTAGTGAGCATTCCGAGGAATTGACATTGAGGAGAACTGGGTTAAGGTTAAGACCATATTTGTCCCAACGGGAGCTTCCCTTTCACCAGATGTATCTGCTCCACTTGTTGCAACTCTTCCCTTGGAGATTAGGAGCAAAATTGAGGAGTTTATCAAGTCTGTATTTGCTCTATTTCAAGTGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCCGCTGTAGTTGGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTAAAGGCTGATAGGATGCATCTTTATGTTAGGAGAGGAGGTTCCAACTACCAGAGGGGACTCGCAAAAATGAGGGCACTTGCAGAGGAAATTGGCCTCCCTATTGAGGTCTATGGTCCTGAAGCAACAATGACTGGTATTTTCAAGCAGGCAATCCAGTGCATCACTGCTACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

166

Amino Acids

18.63

Weight (kDa)

9.8

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	64 - 159	6.5e-35	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	4 cut(s)	190, 280, 301, 463
AhlI	ACTAGT	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AloI	GAACNNNNNNTCC	2 cut(s)	343, 375
AluBI	AGCT	3 cut(s)	88, 269, 319
AluI	AGCT	3 cut(s)	88, 269, 319
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	256
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	228, 270
BlsI	GCNGC	2 cut(s)	229, 271
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	361
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	3 cut(s)	324, 346, 489
BmuI	ACTGGG	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	27, 134
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	3 cut(s)	55, 457, 475
BseDI	CCNNGG	2 cut(s)	27, 134
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseNI	ACTGG	3 cut(s)	55, 457, 475
BseRI	GAGGAG	4 cut(s)	58, 172, 255, 369
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	414
BslFI	GGGAC	2 cut(s)	61, 390
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmFI	GGGAC	2 cut(s)	61, 390
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	200
BsrI	ACTGG	3 cut(s)	55, 457, 475
BssECI	CCNNGG	2 cut(s)	27, 134
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	258, 482, 483
Cac8I	GCNNGC	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	434
CviAII	CATG	1 cut(s)	495
CviJI	RGCY	7 cut(s)	88, 227, 269, 296, 319, 326, 414
CviKI_1	RGCY	7 cut(s)	88, 227, 269, 296, 319, 326, 414
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	134
EcoT22I	ATGCAT	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	1 cut(s)	498
FaiI	YATR	4 cut(s)	70, 345, 432, 496
FaqI	GGGAC	2 cut(s)	61, 390
FatI	CATG	1 cut(s)	494
Fnu4HI	GCNGC	2 cut(s)	228, 270
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	2 cut(s)	228, 270
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	228, 270
HaeIII	GGCC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	498
HinfI	GANTC	1 cut(s)	378
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	28, 205
Hpy188III	TCNNGA	2 cut(s)	209, 437
HpyAV	CCTTC	2 cut(s)	295, 301
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	7 cut(s)	124, 197, 272, 337, 401, 480, 494
Hsp92II	CATG	1 cut(s)	498
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	3 cut(s)	85, 117, 146
LpnPI	CCDG	8 cut(s)	36, 113, 222, 383, 438, 450, 452, 488
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	3 cut(s)	324, 346, 489
MaeI	CTAG	1 cut(s)	15
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	4 cut(s)	32, 152, 246, 408
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	2 cut(s)	217, 387
Mph1103I	ATGCAT	1 cut(s)	339
MseI	TTAA	2 cut(s)	56, 62
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	22
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	229, 271
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	56, 62
SatI	GCNGC	2 cut(s)	228, 270
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	6 cut(s)	62, 90, 271, 321, 361, 429
SfaNI	GCATC	3 cut(s)	324, 346, 489
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	342
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	4 cut(s)	32, 152, 246, 408
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	4 cut(s)	32, 152, 246, 408
TauI	GCSGC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	56, 62
Tru9I	TTAA	2 cut(s)	56, 62
TscAI	CASTG	3 cut(s)	265, 482, 490
TseI	GCWGC	1 cut(s)	269
TspRI	CASTG	3 cut(s)	265, 482, 490
VpaK11BI	GGWCC	1 cut(s)	434
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.