Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

39234718 .. 39236380

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG208500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATGCCTTATGGTTTTGGTGAGCATTCCGAGGAATTGACATTGAGGAAAACTGGGATAAGGTTAAGACCATATTTGTCCCAACGGGAGCTTCCCTTTCACCAGATGTATCTGCTTCACTTTTTGCCACCCTTCCCTTGGAGATTAAGAGAAAAATTGAGGAGTTTATCAAGTCTGTATTTGCTCTATTTCAAGCGTGCAACTTCTGATCCTGATGACCGTAAGAGAGCTCTTGTAATTGGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTTAAGGTTGATGGGATGCATCTTTATGTTAGGAGAGGAGGTCCTAACTACCAGAGGGGACTCCCAAAAATGAGGGCACTTGCAGAGGAAATTGGCCTCCCTATTGAGGTCTATGGTCCTGAAGTAACAATGACTGGTATTTGCAAGCAGGCAATCCAGTGCATCACTGCTGCTGCACGGCAACGTTATATGAAGATGGTTGCTTTCTTCTTGTCTATCTCACCTTTTCTTCTGTGGCAAGTTTCAATATCTCCATACCTTATACCAATTTCTATTGTTAAGCTCTTTGTACCAATTTCATTCTATCAAAAACCTCAGCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

215

Amino Acids

24.76

Weight (kDa)

9.93

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	68 - 160	8.5e-36	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	505
AclWI	GGATC	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	2 cut(s)	138, 427
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	4 cut(s)	193, 283, 304, 567
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	5 cut(s)	91, 230, 272, 322, 604
AluI	AGCT	5 cut(s)	91, 230, 272, 322, 604
Alw21I	GWGCWC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	3 cut(s)	272, 491, 494
AspS9I	GGNCC	2 cut(s)	362, 437
AsuHPI	GGTGA	3 cut(s)	32, 92, 534
AvaII	GGWCC	2 cut(s)	362, 437
BaeGI	GKGCMC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	232
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	3 cut(s)	259, 478, 481
BccI	CCATC	2 cut(s)	326, 511
BceAI	ACGGC	1 cut(s)	515
BfrI	CTTAAG	1 cut(s)	323
BisI	GCNGC	3 cut(s)	273, 492, 495
BlsI	GCNGC	3 cut(s)	274, 493, 496
Bme18I	GGWCC	2 cut(s)	362, 437
BmgT120I	GGNCC	2 cut(s)	362, 437
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	3 cut(s)	327, 349, 492
BmuI	ACTGGG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	30, 137
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 427
Bse1I	ACTGG	3 cut(s)	58, 460, 478
BseDI	CCNNGG	2 cut(s)	30, 137
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	138, 427
BseNI	ACTGG	3 cut(s)	58, 460, 478
BseRI	GAGGAG	3 cut(s)	175, 258, 372
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	259, 478, 481
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	232
BslFI	GGGAC	2 cut(s)	64, 393
BslI	CCNNNNNNNGG	2 cut(s)	138, 427
BsmFI	GGGAC	2 cut(s)	64, 393
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	417
Bsp1286I	GDGCHC	2 cut(s)	232, 400
Bsp143I	GATC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	417
BspPI	GGATC	1 cut(s)	203
BspTI	CTTAAG	1 cut(s)	323
BsrI	ACTGG	3 cut(s)	58, 460, 478
BssECI	CCNNGG	2 cut(s)	30, 137
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	198, 467, 471
BstDEI	CTNAG	1 cut(s)	636
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	259, 478, 481
BsuRI	GGCC	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	342
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	261, 485, 486
Cac8I	GCNNGC	3 cut(s)	198, 467, 471
Cfr13I	GGNCC	2 cut(s)	362, 437
Csp6I	GTAC	1 cut(s)	611
CviJI	RGCY	7 cut(s)	91, 230, 272, 299, 322, 417, 604
CviKI_1	RGCY	7 cut(s)	91, 230, 272, 299, 322, 417, 604
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	362, 437
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	137
FaiI	YATR	8 cut(s)	12, 73, 348, 435, 510, 512, 577, 584
FaqI	GGGAC	2 cut(s)	64, 393
Fnu4HI	GCNGC	3 cut(s)	273, 492, 495
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	273, 492, 495
GluI	GCNGC	3 cut(s)	273, 492, 495
HaeIII	GGCC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	1 cut(s)	381
HphI	GGTGA	3 cut(s)	32, 92, 534
Hpy188I	TCNGA	2 cut(s)	31, 208
Hpy188III	TCNNGA	2 cut(s)	212, 440
HpyAV	CCTTC	3 cut(s)	142, 298, 304
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	7 cut(s)	200, 275, 340, 404, 465, 483, 497
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	8 cut(s)	39, 116, 225, 386, 441, 453, 455, 491
Lsp1109I	GCAGC	3 cut(s)	259, 478, 481
LweI	GCATC	3 cut(s)	327, 349, 492
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	3 cut(s)	520, 526, 542
MhlI	GDGCHC	2 cut(s)	232, 400
MluCI	AATT	7 cut(s)	35, 155, 237, 249, 411, 588, 615
MlyI	GAGTC	1 cut(s)	375
Mph1103I	ATGCAT	1 cut(s)	342
MseI	TTAA	4 cut(s)	65, 146, 324, 600
MslI	CAYNNNNRTG	1 cut(s)	345
MspCI	CTTAAG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	25
NdeII	GATC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	342
PctI	GAATGC	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	274, 493, 496
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PpuMI	RGGWCCY	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	232
Psp1406I	AACGTT	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	362
PspPI	GGNCC	2 cut(s)	362, 437
PspPPI	RGGWCCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	232
SaqAI	TTAA	4 cut(s)	65, 146, 324, 600
SatI	GCNGC	3 cut(s)	273, 492, 495
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	362, 437
SchI	GAGTC	1 cut(s)	375
SduI	GDGCHC	2 cut(s)	232, 400
SfaNI	GCATC	3 cut(s)	327, 349, 492
SinI	GGWCC	2 cut(s)	362, 437
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	7 cut(s)	35, 155, 237, 249, 411, 588, 615
SstI	GAGCTC	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	508
TasI	AATT	7 cut(s)	35, 155, 237, 249, 411, 588, 615
Tru1I	TTAA	4 cut(s)	65, 146, 324, 600
Tru9I	TTAA	4 cut(s)	65, 146, 324, 600
TscAI	CASTG	3 cut(s)	268, 485, 493
TseI	GCWGC	3 cut(s)	272, 491, 494
TspDTI	ATGAA	2 cut(s)	527, 609
TspRI	CASTG	3 cut(s)	268, 485, 493
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	362, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.