Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8281355.1

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

183 .. 798

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8281355.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgcattattgtgcaacagcaaatccagatggtcgtaaaagagctcttctgattggaggtggtatagctaatttcacagatgttgctgctacatttaatggaattattagagcgctgaaggagaaggaatccaagctcaaagcgtcgagaatgcatatatatgtaagaaggggtggtccaaactatcaaactggtttggcaaagatgcgtgcattaggagatgaacttggtgttcctcttgaggtttatgggcctgaggcaactatgacaggaatttgtaaggaagcaattgattgcgtcatgagtgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

103

Amino Acids

11.13

Weight (kDa)

8.86

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	137
AfeI	AGCGCT	1 cut(s)	114
AluBI	AGCT	3 cut(s)	44, 68, 136
AluI	AGCT	3 cut(s)	44, 68, 136
Alw21I	GWGCWC	1 cut(s)	46
Aor51HI	AGCGCT	1 cut(s)	114
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	176, 251
AvaII	GGWCC	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	116
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	176, 251
BmsI	GCATC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	196
Bse21I	CCTNAGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	1 cut(s)	300
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	176, 251
CseI	GACGC	2 cut(s)	132, 286
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	4 cut(s)	44, 68, 136, 253
CviKI_1	RGCY	4 cut(s)	44, 68, 136, 253
DdeI	CTNAG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	176
Eco47III	AGCGCT	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	137
Eco81I	CCTNAGG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	44
EcoT22I	ATGCAT	2 cut(s)	6, 156
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	1 cut(s)	304
FaiI	YATR	8 cut(s)	65, 156, 158, 160, 162, 249, 266, 302
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	87
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	253
HgaI	GACGC	2 cut(s)	132, 286
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	4 cut(s)	26, 147, 239, 301
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	112, 118, 162
HpyCH4V	TGCA	4 cut(s)	4, 14, 154, 212
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	113
LguI	GCTCTTC	1 cut(s)	51
LpnPI	CCDG	4 cut(s)	39, 177, 255, 267
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	195
MboII	GAAGA	1 cut(s)	38
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	4 cut(s)	70, 102, 273, 288
MnlI	CCTC	4 cut(s)	50, 235, 246, 250
Mph1103I	ATGCAT	2 cut(s)	6, 156
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	2 cut(s)	9, 159
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	156
NlaIII	CATG	1 cut(s)	304
NsiI	ATGCAT	2 cut(s)	6, 156
PagI	TCATGA	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	176, 251
RseI	CAYNNNNRTG	2 cut(s)	9, 159
SacI	GAGCTC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	87
Sau96I	GGNCC	2 cut(s)	176, 251
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	5 cut(s)	46, 61, 70, 138, 246
SfaNI	GCATC	1 cut(s)	195
SgeI	CNNG	9 cut(s)	38, 145, 159, 204, 221, 239, 251, 266, 282
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	9, 159
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	4 cut(s)	70, 102, 273, 288
SstI	GAGCTC	1 cut(s)	46
TaqI	TCGA	1 cut(s)	146
TasI	AATT	4 cut(s)	70, 102, 273, 288
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	273
Zsp2I	ATGCAT	2 cut(s)	6, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.