Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008884

Physical Location & Seq

Genomic Coordinates Reverse (-)

33303972 .. 33310238

Gene Structure 6267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCAACTGCAGTTGAAGGACTTCAAGTTCCTCAATCTGCTGTGACATCGTATTTCAAAGAGCAATCTTCTGGTAAGTGGGAACTCCAATTACCAGAGGACACTGTTAAGACTATATTTGTCCCAACAGGAGCTTCCACTGCACCAGATGTATCTGCTCCACTTGTTGCAACTCTTCCCTTGGAGTGTGCAACCTCTGATCCTGATGACCGTAAGAGAGCCCTTGTAATTGGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGTCTATGGTCCTGAAGCAACAATGACTGGTATTTGCAAGCAGGCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

117

Amino Acids

12.28

Weight (kDa)

4.82

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	61 - 101	1.3e-12	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008884)

Species	Orthologous Gene IDs
malus_domestica	MD13G1144700.v1.1 MD16G1138900.v1.1 MD16G1146700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0117321 RchiOBHm_Chr2g0117331
rosa_laevigata	RLG00000022981 RLG00000033361
rosa_multiflora	Rmu_co8191116.1_g000001 Rmu_co8281355.1_g000001 Rmu_sc0005223.1_g000028 Rmu_sc0011990.1_g000002
rosa_samantha	Rh2CG006000 Rh2CG342600 Rh2DG101700 Rh2DG293600 Rh3AG284400 Rh3CG319500 Rh3DG318000 Rh5CG139200 Rh5CG565200 Rh5DG540500 Rh6BG208500
rosa_wichuraiana	Rw3G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	336
AgsI	TTSAA	5 cut(s)	17, 26, 58, 274, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
AluBI	AGCT	2 cut(s)	134, 263
AluI	AGCT	2 cut(s)	134, 263
AlwI	GGATC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	106, 212
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	341, 345
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	102, 138, 252
Cac8I	GCNNGC	2 cut(s)	341, 345
Cfr13I	GGNCC	1 cut(s)	311
CviJI	RGCY	4 cut(s)	134, 221, 263, 290
CviKI_1	RGCY	4 cut(s)	134, 221, 263, 290
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	180
FaiI	YATR	2 cut(s)	116, 309
FaqI	GGGAC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	264
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	352
GluI	GCNGC	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	203, 314
HpyAV	CCTTC	3 cut(s)	11, 289, 295
HpyCH4III	ACNGT	2 cut(s)	106, 212
HpyCH4V	TGCA	6 cut(s)	11, 143, 170, 191, 266, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	131, 163
LpnPI	CCDG	8 cut(s)	57, 108, 114, 159, 216, 315, 327, 329
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	60, 167
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	3 cut(s)	89, 228, 240
MnlI	CCTC	5 cut(s)	42, 91, 205, 227, 230
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	311
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PstI	CTGCAG	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	4 cut(s)	136, 197, 265, 306
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	311
Sse9I	AATT	3 cut(s)	89, 228, 240
SspMI	CTAG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	106, 212
TasI	AATT	3 cut(s)	89, 228, 240
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	3 cut(s)	109, 145, 259
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	43
TspRI	CASTG	3 cut(s)	109, 145, 259
VpaK11BI	GGWCC	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.